AT3G21165
MYB Family

RNA polymerase II transcription regulator recruiting activity

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
N/A
Physical Location & Seq
Forward (+)
7418695 .. 7419441
747 bp
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UTR
Exon/CDS
Intron
AT3G21165.1

Sequence Viewer

Length: 243 bp
ACAGAAGAAGGGAAACATTGTACATCTTCCGGACCGGAGGATTTGGTTGTGGAGATACTCACTAGGGTTCCGGTGGTATCTCTGAAACAATTGCGATCAACACCCAAAGGGTGGAACGCTCTTATCAAAGATGGACTCTGCTTAGACACAACGGCAGTCTCCTCTGTGAGTCTCGATCTCCATGGAATTGTGACAAGGTGTCTTGGAGAAGGCAAAAAGTATGATGACTTCATGAAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

80

Amino Acids

8.7

Weight (kDa)

6.03

Isoelectric Point (pI)

47.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 111
AccIII TCCGGA 1 cut(s) 29
AfaI GTAC 1 cut(s) 22
AfiI CCNNNNNNNGG 1 cut(s) 111
AhdI GACNNNNNGTC 1 cut(s) 198
Alw26I GTCTC 2 cut(s) 163, 176
Aor13HI TCCGGA 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 32
AvaII GGWCC 1 cut(s) 32
BarI GAAGNNNNNNTAC 1 cut(s) 212
BccI CCATC 1 cut(s) 125
BceAI ACGGC 1 cut(s) 168
BcoDI GTCTC 2 cut(s) 163, 176
BfaI CTAG 1 cut(s) 63
Bme18I GGWCC 1 cut(s) 32
BmeRI GACNNNNNGTC 1 cut(s) 198
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 181
BsaWI WCCGGW 3 cut(s) 29, 34, 70
Bsc4I CCNNNNNNNGG 1 cut(s) 111
BseAI TCCGGA 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 111
BseRI GAGGAG 1 cut(s) 151
BsiSI CCGG 3 cut(s) 30, 35, 71
BslI CCNNNNNNNGG 1 cut(s) 111
BsmAI GTCTC 2 cut(s) 163, 176
Bsp13I TCCGGA 1 cut(s) 29
Bsp1407I TGTACA 1 cut(s) 20
Bsp143I GATC 2 cut(s) 95, 175
Bsp19I CCATGG 1 cut(s) 181
BspEI TCCGGA 1 cut(s) 29
BspHI TCATGA 1 cut(s) 231
BspLI GGNNCC 1 cut(s) 69
BsrGI TGTACA 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 181
BssMI GATC 2 cut(s) 95, 175
BssT1I CCWWGG 1 cut(s) 181
BstAUI TGTACA 1 cut(s) 20
BstDEI CTNAG 1 cut(s) 142
BstDSI CCRYGG 1 cut(s) 181
BstKTI GATC 2 cut(s) 98, 178
BstMAI GTCTC 2 cut(s) 163, 176
BstMBI GATC 2 cut(s) 95, 175
BtgI CCRYGG 1 cut(s) 181
CciI TCATGA 1 cut(s) 231
Cfr13I GGNCC 1 cut(s) 32
CpoI CGGWCCG 1 cut(s) 32
Csp6I GTAC 1 cut(s) 21
CspI CGGWCCG 1 cut(s) 32
CviAII CATG 2 cut(s) 182, 232
CviQI GTAC 1 cut(s) 21
DdeI CTNAG 1 cut(s) 142
DpnI GATC 2 cut(s) 97, 177
DpnII GATC 2 cut(s) 95, 175
DriI GACNNNNNGTC 1 cut(s) 198
Eam1105I GACNNNNNGTC 1 cut(s) 198
Eco130I CCWWGG 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 32
EcoT14I CCWWGG 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 181
FaeI CATG 2 cut(s) 185, 235
FaiI YATR 3 cut(s) 183, 222, 233
FatI CATG 2 cut(s) 181, 231
FspBI CTAG 1 cut(s) 63
HapII CCGG 3 cut(s) 30, 35, 71
Hin1II CATG 2 cut(s) 185, 235
HinfI GANTC 2 cut(s) 135, 169
HpaII CCGG 3 cut(s) 30, 35, 71
Hpy188I TCNGA 1 cut(s) 84
Hpy188III TCNNGA 3 cut(s) 30, 173, 232
HpyAV CCTTC 1 cut(s) 203
HpyF3I CTNAG 1 cut(s) 142
Hsp92II CATG 2 cut(s) 185, 235
Kpn2I TCCGGA 1 cut(s) 29
Kzo9I GATC 2 cut(s) 95, 175
LpnPI CCDG 3 cut(s) 43, 48, 84
MaeI CTAG 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 190
MalI GATC 2 cut(s) 97, 177
MboI GATC 2 cut(s) 95, 175
MboII GAAGA 2 cut(s) 17, 18
MfeI CAATTG 1 cut(s) 89
MluCI AATT 3 cut(s) 89, 186, 238
MlyI GAGTC 2 cut(s) 129, 178
MnlI CCTC 2 cut(s) 31, 172
MroI TCCGGA 1 cut(s) 29
MseI TTAA 1 cut(s) 241
MspI CCGG 3 cut(s) 30, 35, 71
MunI CAATTG 1 cut(s) 89
NcoI CCATGG 1 cut(s) 181
NdeII GATC 2 cut(s) 95, 175
NlaIII CATG 2 cut(s) 185, 235
NlaIV GGNNCC 1 cut(s) 69
NmuCI GTSAC 1 cut(s) 190
PagI TCATGA 1 cut(s) 231
PflMI CCANNNNNTGG 1 cut(s) 111
PleI GAGTC 2 cut(s) 129, 177
PpsI GAGTC 2 cut(s) 129, 177
PspN4I GGNNCC 1 cut(s) 69
PspPI GGNCC 1 cut(s) 32
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
Rsr2I CGGWCCG 1 cut(s) 32
RsrII CGGWCCG 1 cut(s) 32
SaqAI TTAA 1 cut(s) 241
Sau3AI GATC 2 cut(s) 95, 175
Sau96I GGNCC 1 cut(s) 32
SchI GAGTC 2 cut(s) 129, 178
SetI ASST 1 cut(s) 200
SgeI CNNG 8 cut(s) 42, 47, 75, 83, 185, 194, 207, 215
SinI GGWCC 1 cut(s) 32
Sse9I AATT 3 cut(s) 89, 186, 238
SspMI CTAG 1 cut(s) 63
StyI CCWWGG 1 cut(s) 181
TaqI TCGA 1 cut(s) 174
TasI AATT 3 cut(s) 89, 186, 238
TatI WGTACW 1 cut(s) 20
Tru1I TTAA 1 cut(s) 241
Tru9I TTAA 1 cut(s) 241
TseFI GTSAC 1 cut(s) 190
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 220
Van91I CCANNNNNTGG 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 32
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.