AT3G26470

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
N/A
Physical Location & Seq
Forward (+)
9685932 .. 9687642
1711 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G26470.1

Sequence Viewer

Length: 666 bp
ATGGCCGTCACTGATTATTTCGCCGGTGAGATAGCGACGGAGCTTTTGAAGCAGCTCTTTCTGATATCTGCGAGAGCAGGCCGGTACAAAAACACAGCCGACAACCTCAGCACCTTGATCGAGAACATTCAACCGACGATCAAAGAGATCCAGTACAGTGGAGTTGAGCTGCCTGCTCACCGCCAGGCTCAAATCCGTATACTCTTTGAGTCTCTAGAGAAGGGCAAGAAACTCATGGACAAATTCTTAACATGCAATCGTTGGAATATGATTCGACAGTTATATCTCATGAAGAAAATGGAGAAGCTAGAGAAGACCCTCTCTGATTTCTTTAGGGCTTCCATTTTGACACACATCCTTGCCGATCTTCATCTTCTCCGGGCCAATTCTGATGAACGTTCCCATGAGCACGTCACATCAACCAAAGGGTGTGACTACGACGGACTTGGCTCAATTCAGTACCAGCACATCCAGCCTAACCTAGACATGGATATGCGGGTCACCATTTTGGAGGCTGAATTCCGCACCTTCTCCAACAACGTCATCAACAACATGCTTGCGATGAAGCGAGCGCAAGATGTCTTACTACGAGCCAACGGCTTTGACCCCGAGACCCTCCTACCGATGATGTCTCCTCCTGCAGCCTCCATGAATCCTCCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0042742 GO:0043207 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0098542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

221

Amino Acids

25.28

Weight (kDa)

7.02

Isoelectric Point (pI)

45.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 11 - 123 2.4e-12 Arabidopsis broad-spectrum mildew resistance protein RPW8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 199
AciI CCGC 3 cut(s) 181, 496, 523
AclI AACGTT 1 cut(s) 397
AclWI GGATC 1 cut(s) 142
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 242, 518
AfaI GTAC 3 cut(s) 86, 155, 461
AfiI CCNNNNNNNGG 1 cut(s) 487
AgsI TTSAA 2 cut(s) 49, 131
AjiI CACGTC 1 cut(s) 412
AjnI CCWGG 1 cut(s) 183
AluBI AGCT 4 cut(s) 43, 55, 169, 307
AluI AGCT 4 cut(s) 43, 55, 169, 307
Alw21I GWGCWC 1 cut(s) 411
Alw26I GTCTC 3 cut(s) 216, 605, 636
AlwI GGATC 1 cut(s) 142
Ama87I CYCGRG 1 cut(s) 608
AoxI GGCC 3 cut(s) 3, 79, 381
ApeKI GCWGC 3 cut(s) 52, 169, 641
ApoI RAATTY 2 cut(s) 242, 518
ArsI GACNNNNNNTTYG 2 cut(s) 28, 60
AspLEI GCGC 1 cut(s) 574
AspS9I GGNCC 1 cut(s) 381
AsuC2I CCSGG 1 cut(s) 380
AsuHPI GGTGA 3 cut(s) 38, 170, 493
AvaI CYCGRG 1 cut(s) 608
BbsI GAAGAC 1 cut(s) 320
Bbv12I GWGCWC 1 cut(s) 411
BbvCI CCTCAGC 1 cut(s) 107
BbvI GCAGC 3 cut(s) 64, 156, 653
BceAI ACGGC 1 cut(s) 613
BcgI CGANNNNNNTGC 2 cut(s) 100, 134
BciT130I CCWGG 1 cut(s) 185
BcnI CCSGG 1 cut(s) 380
BcoDI GTCTC 3 cut(s) 216, 605, 636
BfaI CTAG 3 cut(s) 215, 308, 482
BfmI CTRYAG 1 cut(s) 639
BisI GCNGC 3 cut(s) 53, 170, 642
BlsI GCNGC 3 cut(s) 54, 171, 643
Bme1390I CCNGG 2 cut(s) 185, 380
BmeT110I CYCGRG 1 cut(s) 608
BmgBI CACGTC 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 381
BmrFI CCNGG 2 cut(s) 185, 380
BpiI GAAGAC 1 cut(s) 320
Bpu10I CCTNAGC 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 380
BsaBI GATNNNNATC 1 cut(s) 369
BsaI GGTCTC 1 cut(s) 605
Bsc4I CCNNNNNNNGG 1 cut(s) 487
Bse118I RCCGGY 2 cut(s) 23, 81
Bse1I ACTGG 1 cut(s) 151
Bse8I GATNNNNATC 1 cut(s) 369
BseBI CCWGG 1 cut(s) 185
BseGI GGATG 2 cut(s) 354, 468
BseJI GATNNNNATC 1 cut(s) 369
BseLI CCNNNNNNNGG 1 cut(s) 487
BseMII CTCAG 1 cut(s) 121
BseNI ACTGG 1 cut(s) 151
BseRI GAGGAG 1 cut(s) 624
BseXI GCAGC 3 cut(s) 64, 156, 653
BshFI GGCC 3 cut(s) 5, 81, 383
BsiHKAI GWGCWC 1 cut(s) 411
BsiHKCI CYCGRG 1 cut(s) 608
BsiSI CCGG 3 cut(s) 24, 82, 379
BslI CCNNNNNNNGG 1 cut(s) 487
BsmAI GTCTC 3 cut(s) 216, 605, 636
BsnI GGCC 3 cut(s) 5, 81, 383
Bso31I GGTCTC 1 cut(s) 605
BsoBI CYCGRG 1 cut(s) 608
Bsp1286I GDGCHC 1 cut(s) 411
Bsp143I GATC 4 cut(s) 117, 138, 147, 364
BspACI CCGC 3 cut(s) 181, 496, 523
BspANI GGCC 3 cut(s) 5, 81, 383
BspCNI CTCAG 1 cut(s) 120
BspHI TCATGA 1 cut(s) 288
BspMAI CTGCAG 1 cut(s) 643
BspPI GGATC 1 cut(s) 142
BspTNI GGTCTC 1 cut(s) 605
BsrFI RCCGGY 2 cut(s) 23, 81
BsrI ACTGG 1 cut(s) 151
BssAI RCCGGY 2 cut(s) 23, 81
BssMI GATC 4 cut(s) 117, 138, 147, 364
BssNAI GTATAC 1 cut(s) 200
Bst1107I GTATAC 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 185
Bst4CI ACNGT 2 cut(s) 158, 279
BstC8I GCNNGC 4 cut(s) 79, 174, 558, 570
BstDEI CTNAG 1 cut(s) 107
BstEII GGTNACC 1 cut(s) 499
BstF5I GGATG 2 cut(s) 354, 468
BstHHI GCGC 1 cut(s) 574
BstKTI GATC 4 cut(s) 120, 141, 150, 367
BstMAI GTCTC 3 cut(s) 216, 605, 636
BstMBI GATC 4 cut(s) 117, 138, 147, 364
BstMWI GCNNNNNNNGC 2 cut(s) 49, 472
BstNI CCWGG 1 cut(s) 185
BstNSI RCATGY 2 cut(s) 255, 556
BstPI GGTNACC 1 cut(s) 499
BstSCI CCNGG 2 cut(s) 183, 378
BstSFI CTRYAG 1 cut(s) 639
BstV1I GCAGC 3 cut(s) 64, 156, 653
BstV2I GAAGAC 1 cut(s) 320
BstX2I RGATCY 1 cut(s) 147
BstXI CCANNNNNNTGG 1 cut(s) 158
BstYI RGATCY 1 cut(s) 147
BstZ17I GTATAC 1 cut(s) 200
BsuRI GGCC 3 cut(s) 5, 81, 383
BtgZI GCGATG 1 cut(s) 575
BtrI CACGTC 1 cut(s) 412
BtsCI GGATG 2 cut(s) 354, 468
BtsIMutI CAGTG 2 cut(s) 9, 163
Cac8I GCNNGC 4 cut(s) 79, 174, 558, 570
CciI TCATGA 1 cut(s) 288
CfoI GCGC 1 cut(s) 574
Cfr10I RCCGGY 2 cut(s) 23, 81
Cfr13I GGNCC 1 cut(s) 381
Csp6I GTAC 3 cut(s) 85, 154, 460
CviAII CATG 7 cut(s) 235, 252, 289, 404, 487, 553, 649
CviQI GTAC 3 cut(s) 85, 154, 460
DdeI CTNAG 1 cut(s) 107
DpnI GATC 4 cut(s) 119, 140, 149, 366
DpnII GATC 4 cut(s) 117, 138, 147, 364
EaeI YGGCCR 1 cut(s) 3
Eco31I GGTCTC 1 cut(s) 605
Eco32I GATATC 1 cut(s) 66
Eco88I CYCGRG 1 cut(s) 608
Eco91I GGTNACC 1 cut(s) 499
EcoO65I GGTNACC 1 cut(s) 499
EcoRI GAATTC 1 cut(s) 518
EcoRII CCWGG 1 cut(s) 183
EcoRV GATATC 1 cut(s) 66
FaeI CATG 7 cut(s) 238, 255, 292, 407, 490, 556, 652
FalI AAGNNNNNCTT 2 cut(s) 41, 73
FatI CATG 7 cut(s) 234, 251, 288, 403, 486, 552, 648
FauI CCCGC 1 cut(s) 489
FblI GTMKAC 1 cut(s) 199
Fnu4HI GCNGC 3 cut(s) 53, 170, 642
FokI GGATG 2 cut(s) 341, 455
Fsp4HI GCNGC 3 cut(s) 53, 170, 642
FspBI CTAG 3 cut(s) 215, 308, 482
GlaI GCGC 1 cut(s) 573
GluI GCNGC 3 cut(s) 53, 170, 642
HaeIII GGCC 3 cut(s) 5, 81, 383
HapII CCGG 3 cut(s) 24, 82, 379
HhaI GCGC 1 cut(s) 574
Hin1II CATG 7 cut(s) 238, 255, 292, 407, 490, 556, 652
Hin6I GCGC 1 cut(s) 572
HinP1I GCGC 1 cut(s) 572
HinfI GANTC 3 cut(s) 209, 271, 652
HpaII CCGG 3 cut(s) 24, 82, 379
HphI GGTGA 3 cut(s) 38, 170, 493
Hpy166II GTNNAC 1 cut(s) 200
Hpy188I TCNGA 3 cut(s) 63, 325, 391
Hpy188III TCNNGA 3 cut(s) 121, 215, 289
Hpy8I GTNNAC 1 cut(s) 200
Hpy99I CGWCG 3 cut(s) 40, 139, 443
HpyAV CCTTC 2 cut(s) 214, 538
HpyCH4III ACNGT 2 cut(s) 158, 279
HpyCH4IV ACGT 3 cut(s) 397, 411, 540
HpyCH4V TGCA 2 cut(s) 255, 641
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 472
HpyF3I CTNAG 1 cut(s) 107
HpySE526I ACGT 3 cut(s) 397, 411, 540
Hsp92II CATG 7 cut(s) 238, 255, 292, 407, 490, 556, 652
HspAI GCGC 1 cut(s) 572
Kzo9I GATC 4 cut(s) 117, 138, 147, 364
LmnI GCTCC 1 cut(s) 40
Lsp1109I GCAGC 3 cut(s) 64, 156, 653
MaeI CTAG 3 cut(s) 215, 308, 482
MaeII ACGT 3 cut(s) 397, 411, 540
MaeIII GTNAC 4 cut(s) 7, 412, 431, 499
MalI GATC 4 cut(s) 119, 140, 149, 366
MboI GATC 4 cut(s) 117, 138, 147, 364
MboII GAAGA 4 cut(s) 304, 325, 359, 365
MflI RGATCY 1 cut(s) 147
MhlI GDGCHC 1 cut(s) 411
MluCI AATT 4 cut(s) 242, 385, 453, 518
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 2 cut(s) 242, 558
MnlI CCTC 7 cut(s) 116, 329, 505, 626, 645, 655, 666
MseI TTAA 1 cut(s) 248
MslI CAYNNNNRTG 1 cut(s) 491
MspI CCGG 3 cut(s) 24, 82, 379
MspR9I CCNGG 2 cut(s) 185, 380
MvaI CCWGG 1 cut(s) 185
MwoI GCNNNNNNNGC 2 cut(s) 49, 472
NciI CCSGG 1 cut(s) 380
NdeII GATC 4 cut(s) 117, 138, 147, 364
NlaIII CATG 7 cut(s) 238, 255, 292, 407, 490, 556, 652
NmuCI GTSAC 4 cut(s) 7, 412, 431, 499
NspI RCATGY 2 cut(s) 255, 556
PagI TCATGA 1 cut(s) 288
PfeI GAWTC 2 cut(s) 271, 652
PkrI GCNGC 3 cut(s) 54, 171, 643
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
Psp1406I AACGTT 1 cut(s) 397
Psp6I CCWGG 1 cut(s) 183
PspEI GGTNACC 1 cut(s) 499
PspGI CCWGG 1 cut(s) 183
PspPI GGNCC 1 cut(s) 381
PstI CTGCAG 1 cut(s) 643
PsuI RGATCY 1 cut(s) 147
RsaI GTAC 3 cut(s) 86, 155, 461
RsaNI GTAC 3 cut(s) 85, 154, 460
RseI CAYNNNNRTG 1 cut(s) 491
SaqAI TTAA 1 cut(s) 248
SatI GCNGC 3 cut(s) 53, 170, 642
Sau3AI GATC 4 cut(s) 117, 138, 147, 364
Sau96I GGNCC 1 cut(s) 381
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 2 cut(s) 185, 380
SduI GDGCHC 1 cut(s) 411
SfcI CTRYAG 1 cut(s) 639
SgrAI CRCCGGYG 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 491
Sse9I AATT 4 cut(s) 242, 385, 453, 518
SsiI CCGC 3 cut(s) 181, 496, 523
SspMI CTAG 3 cut(s) 215, 308, 482
StyD4I CCNGG 2 cut(s) 183, 378
TaaI ACNGT 2 cut(s) 158, 279
TaiI ACGT 3 cut(s) 400, 414, 543
TaqI TCGA 2 cut(s) 120, 274
TasI AATT 4 cut(s) 242, 385, 453, 518
TatI WGTACW 1 cut(s) 153
TfiI GAWTC 2 cut(s) 271, 652
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TscAI CASTG 2 cut(s) 16, 163
TseFI GTSAC 4 cut(s) 7, 412, 431, 499
TseI GCWGC 3 cut(s) 52, 169, 641
Tsp45I GTSAC 4 cut(s) 7, 412, 431, 499
TspDTI ATGAA 5 cut(s) 305, 359, 408, 578, 665
TspGWI ACGGA 3 cut(s) 53, 185, 456
TspRI CASTG 2 cut(s) 16, 163
XapI RAATTY 2 cut(s) 242, 518
XbaI TCTAGA 1 cut(s) 214
XceI RCATGY 2 cut(s) 255, 556
XmiI GTMKAC 1 cut(s) 199
XspI CTAG 3 cut(s) 215, 308, 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.