Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

18139172 .. 18140772

Gene Structure 1601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G48920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGTGTTTAAATCAGAAAAATCAAACCGGGAAATGAAATCAAAGGAGAAGCAAAGGAAGGGATTATGGTCACCCGAGGAAGATGAGAAGCTTAGGAGTCATGTCCTCAAATATGGCCATGGATGCTGGAGTACTATTCCTCTTCAAGCTGGATTGCAGAGGAATGGGAAGAGTTGTAGATTAAGGTGGGTTAATTATTTAAGACCTGGACTTAAGAAGTCTTTATTCACTAAACAAGAGGAAACTATACTTCTTTCACTTCATTCCATGTTGGGTAACAAATGGTCTCAGATATCGAAATTCTTACCAGGAAGAACCGACAACGAGATCAAAAACTATTGGCATTCTAATCTAAAGAAGGGTGTAACTTTGAAACAACATGAAACCACAAAAAAACATCAAACACCTTTAATCACAAACTCACTTGAGGCCTTGCAGAGTTCAACTGAAAGATCTTCTTCATCTATCAATGTCGGAGAAACGTCTAATGCTCAAACCTCAAGCTTTTCGCCAAATCTCGTGTTCTCGGAATGGTTAGATCATAGTTTGCTTATGGATCAGTCACCTCAAAAGTCTAGCTATGTTCAAAATCTTGTTTTACCGGAAGAGAGAGGATTCATTGGACCATGTGGCCCTCGTTATTTGGGAAACGACTCTTTGCCTGATTTCGTGCCAAATTCAGAATTTTTGTTGGATGATGAGATATCATCTGAGATCGAGTTCTGTACTTCATTTTCAGACAACTTTTTGTTCGATGGTCTCATCAACGAGCTACGACCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010033 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

261

Amino Acids

29.88

Weight (kDa)

8.26

Isoelectric Point (pI)

56.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	20 - 67	7.3e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	23 - 81	3e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	75 - 118	1.9e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	76 - 119	7.5e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	564
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	3 cut(s)	299, 676, 683
AfaI	GTAC	2 cut(s)	133, 727
AflII	CTTAAG	1 cut(s)	212
AgsI	TTSAA	4 cut(s)	146, 373, 444, 587
AjnI	CCWGG	2 cut(s)	205, 307
AluBI	AGCT	5 cut(s)	91, 149, 504, 579, 772
AluI	AGCT	5 cut(s)	91, 149, 504, 579, 772
Alw26I	GTCTC	2 cut(s)	291, 764
AlwI	GGATC	1 cut(s)	564
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	3 cut(s)	115, 429, 631
ApoI	RAATTY	3 cut(s)	299, 676, 683
AspS9I	GGNCC	2 cut(s)	623, 632
AsuC2I	CCSGG	1 cut(s)	29
AsuHPI	GGTGA	2 cut(s)	63, 555
AvaI	CYCGRG	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	623
BalI	TGGCCA	1 cut(s)	117
BauI	CACGAG	1 cut(s)	518
BccI	CCATC	1 cut(s)	749
BciT130I	CCWGG	2 cut(s)	207, 309
BcnI	CCSGG	1 cut(s)	29
BcoDI	GTCTC	2 cut(s)	291, 764
BfaI	CTAG	1 cut(s)	576
BfrI	CTTAAG	1 cut(s)	212
BglII	AGATCT	1 cut(s)	452
BmcAI	AGTACT	1 cut(s)	133
Bme1390I	CCNGG	3 cut(s)	29, 207, 309
Bme18I	GGWCC	1 cut(s)	623
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	2 cut(s)	623, 632
BmrFI	CCNGG	3 cut(s)	29, 207, 309
BmsI	GCATC	1 cut(s)	113
BpmI	CTGGAG	1 cut(s)	148
Bpu10I	CCTNAGC	1 cut(s)	92
BpuEI	CTTGAG	2 cut(s)	446, 484
BpuMI	CCSGG	1 cut(s)	29
BsaI	GGTCTC	2 cut(s)	291, 764
BsaJI	CCNNGG	2 cut(s)	75, 118
BsaWI	WCCGGW	1 cut(s)	601
BseBI	CCWGG	2 cut(s)	207, 309
BseDI	CCNNGG	2 cut(s)	75, 118
BseGI	GGATG	2 cut(s)	128, 700
BseMII	CTCAG	2 cut(s)	302, 702
BshFI	GGCC	3 cut(s)	117, 431, 633
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	2 cut(s)	28, 602
BsmAI	GTCTC	2 cut(s)	291, 764
BsmI	GAATGC	1 cut(s)	343
BsnI	GGCC	3 cut(s)	117, 431, 633
Bso31I	GGTCTC	2 cut(s)	291, 764
BsoBI	CYCGRG	1 cut(s)	74
Bsp143I	GATC	5 cut(s)	327, 452, 538, 556, 714
Bsp19I	CCATGG	1 cut(s)	118
BspANI	GGCC	3 cut(s)	117, 431, 633
BspCNI	CTCAG	2 cut(s)	301, 703
BspPI	GGATC	1 cut(s)	564
BspTI	CTTAAG	1 cut(s)	212
BspTNI	GGTCTC	2 cut(s)	291, 764
BssECI	CCNNGG	2 cut(s)	75, 118
BssMI	GATC	5 cut(s)	327, 452, 538, 556, 714
BssSI	CACGAG	1 cut(s)	518
BssT1I	CCWWGG	1 cut(s)	118
Bst2BI	CACGAG	1 cut(s)	518
Bst2UI	CCWGG	2 cut(s)	207, 309
Bst6I	CTCTTC	3 cut(s)	147, 164, 600
BstAFI	CTTAAG	1 cut(s)	212
BstDEI	CTNAG	3 cut(s)	92, 288, 711
BstDSI	CCRYGG	1 cut(s)	118
BstEII	GGTNACC	1 cut(s)	69
BstF5I	GGATG	2 cut(s)	128, 700
BstKTI	GATC	5 cut(s)	330, 455, 541, 559, 717
BstMAI	GTCTC	2 cut(s)	291, 764
BstMBI	GATC	5 cut(s)	327, 452, 538, 556, 714
BstMWI	GCNNNNNNNGC	1 cut(s)	123
BstNI	CCWGG	2 cut(s)	207, 309
BstPI	GGTNACC	1 cut(s)	69
BstSCI	CCNGG	3 cut(s)	27, 205, 307
BstX2I	RGATCY	1 cut(s)	452
BstYI	RGATCY	1 cut(s)	452
BsuRI	GGCC	3 cut(s)	117, 431, 633
BtgI	CCRYGG	1 cut(s)	118
BtsCI	GGATG	2 cut(s)	128, 700
Cfr13I	GGNCC	2 cut(s)	623, 632
Csp6I	GTAC	2 cut(s)	132, 726
CviAII	CATG	5 cut(s)	101, 119, 268, 380, 627
CviJI	RGCY	8 cut(s)	91, 117, 149, 431, 504, 579, 633, 772
CviKI_1	RGCY	8 cut(s)	91, 117, 149, 431, 504, 579, 633, 772
CviQI	GTAC	2 cut(s)	132, 726
DdeI	CTNAG	3 cut(s)	92, 288, 711
DpnI	GATC	5 cut(s)	329, 454, 540, 558, 716
DpnII	GATC	5 cut(s)	327, 452, 538, 556, 714
DraI	TTTAAA	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	115
Eam1104I	CTCTTC	3 cut(s)	147, 164, 600
EarI	CTCTTC	3 cut(s)	147, 164, 600
Eco130I	CCWWGG	1 cut(s)	118
Eco147I	AGGCCT	1 cut(s)	431
Eco31I	GGTCTC	2 cut(s)	291, 764
Eco32I	GATATC	2 cut(s)	294, 705
Eco47I	GGWCC	1 cut(s)	623
Eco88I	CYCGRG	1 cut(s)	74
Eco91I	GGTNACC	1 cut(s)	69
EcoO65I	GGTNACC	1 cut(s)	69
EcoRII	CCWGG	2 cut(s)	205, 307
EcoRV	GATATC	2 cut(s)	294, 705
EcoT14I	CCWWGG	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	5 cut(s)	104, 122, 271, 383, 630
FalI	AAGNNNNNCTT	2 cut(s)	442, 474
FatI	CATG	5 cut(s)	100, 118, 267, 379, 626
FokI	GGATG	2 cut(s)	135, 707
FspBI	CTAG	1 cut(s)	576
GsuI	CTGGAG	1 cut(s)	148
HaeIII	GGCC	3 cut(s)	117, 431, 633
HapII	CCGG	2 cut(s)	28, 602
Hin1II	CATG	5 cut(s)	104, 122, 271, 383, 630
HindIII	AAGCTT	2 cut(s)	89, 502
HinfI	GANTC	3 cut(s)	97, 615, 653
HpaII	CCGG	2 cut(s)	28, 602
HphI	GGTGA	2 cut(s)	63, 555
Hpy188I	TCNGA	7 cut(s)	16, 291, 476, 529, 682, 712, 739
HpyAV	CCTTC	2 cut(s)	52, 352
HpyCH4IV	ACGT	1 cut(s)	482
HpyCH4V	TGCA	2 cut(s)	157, 436
HpyF10VI	GCNNNNNNNGC	1 cut(s)	123
HpyF3I	CTNAG	3 cut(s)	92, 288, 711
HpySE526I	ACGT	1 cut(s)	482
Hsp92II	CATG	5 cut(s)	104, 122, 271, 383, 630
Kzo9I	GATC	5 cut(s)	327, 452, 538, 556, 714
LpnPI	CCDG	9 cut(s)	41, 112, 135, 192, 219, 294, 321, 615, 675
LweI	GCATC	1 cut(s)	113
MaeI	CTAG	1 cut(s)	576
MaeII	ACGT	1 cut(s)	482
MaeIII	GTNAC	4 cut(s)	69, 275, 364, 561
MalI	GATC	5 cut(s)	329, 454, 540, 558, 716
MboI	GATC	5 cut(s)	327, 452, 538, 556, 714
MboII	GAAGA	7 cut(s)	92, 134, 181, 324, 447, 450, 617
MflI	RGATCY	1 cut(s)	452
MlsI	TGGCCA	1 cut(s)	117
MluCI	AATT	4 cut(s)	193, 299, 676, 683
MluNI	TGGCCA	1 cut(s)	117
MlyI	GAGTC	2 cut(s)	106, 647
MmeI	TCCRAC	2 cut(s)	454, 672
Mox20I	TGGCCA	1 cut(s)	117
MscI	TGGCCA	1 cut(s)	117
MseI	TTAA	6 cut(s)	9, 182, 192, 200, 213, 410
Msp20I	TGGCCA	1 cut(s)	117
MspCI	CTTAAG	1 cut(s)	212
MspI	CCGG	2 cut(s)	28, 602
MspR9I	CCNGG	3 cut(s)	29, 207, 309
Mva1269I	GAATGC	1 cut(s)	343
MvaI	CCWGG	2 cut(s)	207, 309
MwoI	GCNNNNNNNGC	1 cut(s)	123
NciI	CCSGG	1 cut(s)	29
NcoI	CCATGG	1 cut(s)	118
NdeII	GATC	5 cut(s)	327, 452, 538, 556, 714
NlaIII	CATG	5 cut(s)	104, 122, 271, 383, 630
NmuCI	GTSAC	2 cut(s)	69, 561
PceI	AGGCCT	1 cut(s)	431
PctI	GAATGC	1 cut(s)	343
PfeI	GAWTC	1 cut(s)	615
PleI	GAGTC	2 cut(s)	105, 647
PpsI	GAGTC	2 cut(s)	105, 647
Psp6I	CCWGG	2 cut(s)	205, 307
PspEI	GGTNACC	1 cut(s)	69
PspGI	CCWGG	2 cut(s)	205, 307
PspPI	GGNCC	2 cut(s)	623, 632
PsuI	RGATCY	1 cut(s)	452
RsaI	GTAC	2 cut(s)	133, 727
RsaNI	GTAC	2 cut(s)	132, 726
SaqAI	TTAA	6 cut(s)	9, 182, 192, 200, 213, 410
Sau3AI	GATC	5 cut(s)	327, 452, 538, 556, 714
Sau96I	GGNCC	2 cut(s)	623, 632
ScaI	AGTACT	1 cut(s)	133
SchI	GAGTC	2 cut(s)	106, 647
ScrFI	CCNGG	3 cut(s)	29, 207, 309
SfaNI	GCATC	1 cut(s)	113
SinI	GGWCC	1 cut(s)	623
SmlI	CTYRAG	3 cut(s)	212, 425, 499
SmoI	CTYRAG	3 cut(s)	212, 425, 499
Sse9I	AATT	4 cut(s)	193, 299, 676, 683
SseBI	AGGCCT	1 cut(s)	431
SspMI	CTAG	1 cut(s)	576
StuI	AGGCCT	1 cut(s)	431
StyD4I	CCNGG	3 cut(s)	27, 205, 307
StyI	CCWWGG	1 cut(s)	118
TaiI	ACGT	1 cut(s)	485
TaqI	TCGA	3 cut(s)	296, 717, 753
TasI	AATT	4 cut(s)	193, 299, 676, 683
TatI	WGTACW	2 cut(s)	131, 725
TfiI	GAWTC	1 cut(s)	615
Tru1I	TTAA	6 cut(s)	9, 182, 192, 200, 213, 410
Tru9I	TTAA	6 cut(s)	9, 182, 192, 200, 213, 410
TseFI	GTSAC	2 cut(s)	69, 561
Tsp45I	GTSAC	2 cut(s)	69, 561
TspDTI	ATGAA	6 cut(s)	50, 251, 396, 450, 607, 720
Vha464I	CTTAAG	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	623
XapI	RAATTY	3 cut(s)	299, 676, 683
XspI	CTAG	1 cut(s)	576
ZrmI	AGTACT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.