AT3G50060
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
N/A
Physical Location & Seq
Reverse (-)
18557607 .. 18559326
1720 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G50060.1

Sequence Viewer

Length: 906 bp
ATGGCGGATCGTGTTAAAGGTCCATGGAGTCAAGAAGAAGATGAGCAGCTACGAAGGATGGTTGAGAAATACGGACCGAGGAATTGGTCTGCGATTAGCAAATCGATTCCAGGTCGATCTGGTAAATCGTGTAGATTACGTTGGTGTAATCAGTTATCTCCGGAGGTTGAGCATCGTCCTTTCTCGCCGGAGGAAGATGAGACTATTGTAACCGCCCGTGCTCAGTTTGGTAACAAGTGGGCGACGATTGCTCGTCTTCTTAACGGTCGTACGGATAACGCCGTTAAAAATCACTGGAACTCTACGCTTAAGAGGAAATGCAGCGGAGGTGTGGCGGTTACGACGGTGACGGAGACGGAGGAAGATCAGGATCGGCCGAAGAAGAGGAGATCTGTTAGCTTTGATTCTGCTTTTGCTCCGGTGGATACTGGATTGTACATGAGTCCTGAGAGTCCTAACGGAATCGATGTTAGTGATTCTAGCACGATTCCGTCACCGTCGTCTCCTGTTGCTCAGCTGTTTAAACCAATGCCGATTTCCGGCGGTTTTACGGTGGTTCCGCAGCCGTTACCGGTTGAAATGTCTTCGTCTTCGGAGGATCCACCTACTTCGTTGAGTTTGTCACTACCTGGAGCTGAGAACACGAGTTCGAGCCATAACAATAACAACAACGCGTTGATGTTTCCGAGATTTGAGAGTCAGATGAAGATTAATGTAGAGGAGAGAGGAGAAGGACGTAGAGGTGAGTTTATGACGGTGGTGCAGGAGATGATAAAAGCTGAAGTGAGGAGTTACATGGCGGAAATGCAGAAAACAAGTGGTGGATTCGTCGTCGGAGGTTTATACGAATCCGGCGGCAATGGTGGTTTTAGGGATTGTGGAGTAATAACACCTAAGGTTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022622 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0047484 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048527 GO:0048528 GO:0048583 GO:0048584 GO:0048585 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0090696 GO:0097159 GO:0097305 GO:0098542 GO:0099402 GO:0140110 GO:1901000 GO:1901001 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

301

Amino Acids

33.11

Weight (kDa)

6.07

Isoelectric Point (pI)

67.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 6 - 52 1.9e-19 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 9 - 68 3.7e-18 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 59 - 102 7.4e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 61 - 109 3.3e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 674
AccIII TCCGGA 1 cut(s) 160
AciI CCGC 8 cut(s) 5, 213, 324, 335, 543, 560, 800, 855
AclWI GGATC 4 cut(s) 15, 378, 593, 606
AcoI YGGCCR 1 cut(s) 374
AcuI CTGAAG 1 cut(s) 801
AfaI GTAC 2 cut(s) 271, 437
AfiI CCNNNNNNNGG 1 cut(s) 539
AflII CTTAAG 1 cut(s) 308
AflIII ACRYGT 1 cut(s) 672
AgeI ACCGGT 1 cut(s) 571
AgsI TTSAA 1 cut(s) 578
AjnI CCWGG 2 cut(s) 109, 628
AjuI GAANNNNNNNTTGG 2 cut(s) 520, 552
AluBI AGCT 5 cut(s) 49, 399, 517, 635, 779
AluI AGCT 5 cut(s) 49, 399, 517, 635, 779
Alw21I GWGCWC 1 cut(s) 223
Alw26I GTCTC 3 cut(s) 194, 347, 507
AlwI GGATC 4 cut(s) 15, 378, 593, 606
Aor13HI TCCGGA 1 cut(s) 160
AoxI GGCC 1 cut(s) 374
ApeKI GCWGC 3 cut(s) 46, 321, 562
AseI ATTAAT 1 cut(s) 711
AsiGI ACCGGT 1 cut(s) 571
AspS9I GGNCC 2 cut(s) 20, 74
AsuHPI GGTGA 3 cut(s) 358, 486, 755
AvaII GGWCC 2 cut(s) 20, 74
AxyI CCTNAGG 1 cut(s) 894
BamHI GGATCC 1 cut(s) 598
BauI CACGAG 1 cut(s) 643
BbsI GAAGAC 3 cut(s) 248, 576, 582
Bbv12I GWGCWC 1 cut(s) 223
BbvI GCAGC 3 cut(s) 58, 333, 574
BccI CCATC 1 cut(s) 52
BceAI ACGGC 2 cut(s) 266, 550
BciT130I CCWGG 2 cut(s) 111, 630
BciVI GTATCC 1 cut(s) 418
BcoDI GTCTC 3 cut(s) 194, 347, 507
BfaI CTAG 1 cut(s) 480
BfrI CTTAAG 1 cut(s) 308
BfuI GTATCC 1 cut(s) 418
BglII AGATCT 1 cut(s) 389
BisI GCNGC 4 cut(s) 47, 322, 563, 856
BlpI GCTNAGC 1 cut(s) 513
BlsI GCNGC 4 cut(s) 48, 323, 564, 857
Bme1390I CCNGG 2 cut(s) 111, 630
Bme18I GGWCC 2 cut(s) 20, 74
BmgT120I GGNCC 2 cut(s) 20, 74
BmiI GGNNCC 2 cut(s) 558, 600
BmrFI CCNGG 2 cut(s) 111, 630
BmsI GCATC 1 cut(s) 181
BpiI GAAGAC 3 cut(s) 248, 576, 582
BpmI CTGGAG 1 cut(s) 651
Bpu1102I GCTNAGC 1 cut(s) 513
Bsa29I ATCGAT 2 cut(s) 104, 465
BsaBI GATNNNNATC 1 cut(s) 369
BsaJI CCNNGG 2 cut(s) 23, 77
BsaWI WCCGGW 3 cut(s) 160, 418, 571
Bsc4I CCNNNNNNNGG 1 cut(s) 539
Bse118I RCCGGY 1 cut(s) 571
Bse1I ACTGG 2 cut(s) 299, 433
Bse21I CCTNAGG 1 cut(s) 894
Bse3DI GCAATG 1 cut(s) 865
Bse8I GATNNNNATC 1 cut(s) 369
BseAI TCCGGA 1 cut(s) 160
BseBI CCWGG 2 cut(s) 111, 630
BseCI ATCGAT 2 cut(s) 104, 465
BseDI CCNNGG 2 cut(s) 23, 77
BseGI GGATG 1 cut(s) 63
BseJI GATNNNNATC 1 cut(s) 369
BseLI CCNNNNNNNGG 1 cut(s) 539
BseMI GCAATG 1 cut(s) 865
BseMII CTCAG 4 cut(s) 236, 438, 527, 627
BseNI ACTGG 2 cut(s) 299, 433
BseRI GAGGAG 4 cut(s) 400, 734, 741, 802
BseX3I CGGCCG 1 cut(s) 374
BseXI GCAGC 3 cut(s) 58, 333, 574
BsgI GTGCAG 1 cut(s) 782
Bsh1236I CGCG 1 cut(s) 674
Bsh1285I CGRYCG 2 cut(s) 268, 377
BshFI GGCC 1 cut(s) 376
BshTI ACCGGT 1 cut(s) 571
BshVI ATCGAT 2 cut(s) 104, 465
BsiEI CGRYCG 2 cut(s) 268, 377
BsiHKAI GWGCWC 1 cut(s) 223
BsiSI CCGG 6 cut(s) 161, 188, 419, 540, 572, 852
BsiWI CGTACG 1 cut(s) 269
BslI CCNNNNNNNGG 1 cut(s) 539
BsmAI GTCTC 3 cut(s) 194, 347, 507
BsmBI CGTCTC 2 cut(s) 347, 507
BsnI GGCC 1 cut(s) 376
Bsp1286I GDGCHC 1 cut(s) 223
Bsp13I TCCGGA 1 cut(s) 160
Bsp1407I TGTACA 1 cut(s) 435
Bsp143I GATC 6 cut(s) 7, 116, 364, 370, 389, 598
Bsp1720I GCTNAGC 1 cut(s) 513
Bsp19I CCATGG 1 cut(s) 23
BspACI CCGC 8 cut(s) 5, 213, 324, 335, 543, 560, 800, 855
BspANI GGCC 1 cut(s) 376
BspCNI CTCAG 4 cut(s) 235, 439, 526, 628
BspDI ATCGAT 2 cut(s) 104, 465
BspEI TCCGGA 1 cut(s) 160
BspFNI CGCG 1 cut(s) 674
BspLI GGNNCC 2 cut(s) 558, 600
BspPI GGATC 4 cut(s) 15, 378, 593, 606
BspTI CTTAAG 1 cut(s) 308
BsrDI GCAATG 1 cut(s) 865
BsrFI RCCGGY 1 cut(s) 571
BsrGI TGTACA 1 cut(s) 435
BsrI ACTGG 2 cut(s) 299, 433
BssAI RCCGGY 1 cut(s) 571
BssECI CCNNGG 2 cut(s) 23, 77
BssMI GATC 6 cut(s) 7, 116, 364, 370, 389, 598
BssSI CACGAG 1 cut(s) 643
BssT1I CCWWGG 1 cut(s) 23
Bst2BI CACGAG 1 cut(s) 643
Bst2UI CCWGG 2 cut(s) 111, 630
Bst4CI ACNGT 5 cut(s) 266, 346, 498, 553, 757
Bst6I CTCTTC 1 cut(s) 377
BstAFI CTTAAG 1 cut(s) 308
BstAUI TGTACA 1 cut(s) 435
BstDEI CTNAG 5 cut(s) 222, 447, 513, 636, 894
BstDSI CCRYGG 1 cut(s) 23
BstF5I GGATG 1 cut(s) 63
BstFNI CGCG 1 cut(s) 674
BstKTI GATC 6 cut(s) 10, 119, 367, 373, 392, 601
BstMAI GTCTC 3 cut(s) 194, 347, 507
BstMBI GATC 6 cut(s) 7, 116, 364, 370, 389, 598
BstMCI CGRYCG 2 cut(s) 268, 377
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstNI CCWGG 2 cut(s) 111, 630
BstSCI CCNGG 2 cut(s) 109, 628
BstUI CGCG 1 cut(s) 674
BstV1I GCAGC 3 cut(s) 58, 333, 574
BstV2I GAAGAC 3 cut(s) 248, 576, 582
BstX2I RGATCY 2 cut(s) 389, 598
BstYI RGATCY 2 cut(s) 389, 598
BstZI CGGCCG 1 cut(s) 374
Bsu15I ATCGAT 2 cut(s) 104, 465
Bsu36I CCTNAGG 1 cut(s) 894
BsuI GTATCC 1 cut(s) 418
BsuRI GGCC 1 cut(s) 376
BsuTUI ATCGAT 2 cut(s) 104, 465
BtgI CCRYGG 1 cut(s) 23
BtsCI GGATG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 292
Cfr10I RCCGGY 1 cut(s) 571
Cfr13I GGNCC 2 cut(s) 20, 74
ClaI ATCGAT 2 cut(s) 104, 465
CpoI CGGWCCG 1 cut(s) 74
Csp6I GTAC 2 cut(s) 270, 436
CspAI ACCGGT 1 cut(s) 571
CspI CGGWCCG 1 cut(s) 74
CviAII CATG 3 cut(s) 24, 439, 796
CviJI RGCY 8 cut(s) 49, 376, 399, 517, 565, 635, 654, 779
CviKI_1 RGCY 8 cut(s) 49, 376, 399, 517, 565, 635, 654, 779
CviQI GTAC 2 cut(s) 270, 436
DdeI CTNAG 5 cut(s) 222, 447, 513, 636, 894
DpnI GATC 6 cut(s) 9, 118, 366, 372, 391, 600
DpnII GATC 6 cut(s) 7, 116, 364, 370, 389, 598
DraI TTTAAA 1 cut(s) 523
EaeI YGGCCR 1 cut(s) 374
EagI CGGCCG 1 cut(s) 374
Eam1104I CTCTTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 377
EciI GGCGGA 2 cut(s) 20, 815
EclXI CGGCCG 1 cut(s) 374
Eco130I CCWWGG 1 cut(s) 23
Eco47I GGWCC 2 cut(s) 20, 74
Eco52I CGGCCG 1 cut(s) 374
Eco57I CTGAAG 1 cut(s) 801
Eco81I CCTNAGG 1 cut(s) 894
EcoRII CCWGG 2 cut(s) 109, 628
EcoT14I CCWWGG 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 23
Esp3I CGTCTC 2 cut(s) 347, 507
FaeI CATG 3 cut(s) 27, 442, 799
FaiI YATR 6 cut(s) 25, 440, 657, 752, 797, 844
FatI CATG 3 cut(s) 23, 438, 795
Fnu4HI GCNGC 4 cut(s) 47, 322, 563, 856
FokI GGATG 1 cut(s) 70
Fsp4HI GCNGC 4 cut(s) 47, 322, 563, 856
FspBI CTAG 1 cut(s) 480
GluI GCNGC 4 cut(s) 47, 322, 563, 856
GsuI CTGGAG 1 cut(s) 651
HaeIII GGCC 1 cut(s) 376
HapII CCGG 6 cut(s) 161, 188, 419, 540, 572, 852
Hin1II CATG 3 cut(s) 27, 442, 799
HpaII CCGG 6 cut(s) 161, 188, 419, 540, 572, 852
HphI GGTGA 3 cut(s) 358, 486, 755
Hpy188I TCNGA 4 cut(s) 595, 687, 702, 836
Hpy188III TCNNGA 4 cut(s) 32, 161, 368, 446
Hpy99I CGWCG 5 cut(s) 247, 346, 502, 833, 836
HpyAV CCTTC 2 cut(s) 48, 725
HpyCH4III ACNGT 5 cut(s) 266, 346, 498, 553, 757
HpyCH4IV ACGT 2 cut(s) 139, 736
HpyCH4V TGCA 3 cut(s) 321, 763, 808
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 5 cut(s) 222, 447, 513, 636, 894
HpySE526I ACGT 2 cut(s) 139, 736
Hsp92II CATG 3 cut(s) 27, 442, 799
Kpn2I TCCGGA 1 cut(s) 160
Kzo9I GATC 6 cut(s) 7, 116, 364, 370, 389, 598
LmnI GCTCC 2 cut(s) 421, 632
Lsp1109I GCAGC 3 cut(s) 58, 333, 574
LweI GCATC 1 cut(s) 181
MaeI CTAG 1 cut(s) 480
MaeII ACGT 2 cut(s) 139, 736
MaeIII GTNAC 8 cut(s) 208, 230, 337, 346, 492, 567, 621, 791
MalI GATC 6 cut(s) 9, 118, 366, 372, 391, 600
MboI GATC 6 cut(s) 7, 116, 364, 370, 389, 598
MflI RGATCY 2 cut(s) 389, 598
MhlI GDGCHC 1 cut(s) 223
MluCI AATT 1 cut(s) 82
MluI ACGCGT 1 cut(s) 672
MlyI GAGTC 4 cut(s) 37, 451, 460, 706
MmeI TCCRAC 1 cut(s) 814
MroI TCCGGA 1 cut(s) 160
MseI TTAA 6 cut(s) 15, 261, 285, 309, 522, 711
MspA1I CMGCKG 2 cut(s) 324, 517
MspCI CTTAAG 1 cut(s) 308
MspI CCGG 6 cut(s) 161, 188, 419, 540, 572, 852
MspR9I CCNGG 2 cut(s) 111, 630
MssI GTTTAAAC 1 cut(s) 523
MvaI CCWGG 2 cut(s) 111, 630
MvnI CGCG 1 cut(s) 674
MwoI GCNNNNNNNGC 1 cut(s) 248
NcoI CCATGG 1 cut(s) 23
NdeII GATC 6 cut(s) 7, 116, 364, 370, 389, 598
NlaIII CATG 3 cut(s) 27, 442, 799
NlaIV GGNNCC 2 cut(s) 558, 600
NmuCI GTSAC 3 cut(s) 346, 492, 621
PfeI GAWTC 7 cut(s) 106, 404, 462, 476, 487, 825, 848
Pfl23II CGTACG 1 cut(s) 269
PinAI ACCGGT 1 cut(s) 571
PkrI GCNGC 4 cut(s) 48, 323, 564, 857
PleI GAGTC 4 cut(s) 36, 450, 459, 705
PmeI GTTTAAAC 1 cut(s) 523
PpsI GAGTC 4 cut(s) 36, 450, 459, 705
PshBI ATTAAT 1 cut(s) 711
Psp6I CCWGG 2 cut(s) 109, 628
PspGI CCWGG 2 cut(s) 109, 628
PspLI CGTACG 1 cut(s) 269
PspN4I GGNNCC 2 cut(s) 558, 600
PspPI GGNCC 2 cut(s) 20, 74
PsuI RGATCY 2 cut(s) 389, 598
PvuII CAGCTG 1 cut(s) 517
RsaI GTAC 2 cut(s) 271, 437
RsaNI GTAC 2 cut(s) 270, 436
Rsr2I CGGWCCG 1 cut(s) 74
RsrII CGGWCCG 1 cut(s) 74
SaqAI TTAA 6 cut(s) 15, 261, 285, 309, 522, 711
SatI GCNGC 4 cut(s) 47, 322, 563, 856
Sau3AI GATC 6 cut(s) 7, 116, 364, 370, 389, 598
Sau96I GGNCC 2 cut(s) 20, 74
SchI GAGTC 4 cut(s) 37, 451, 460, 706
ScrFI CCNGG 2 cut(s) 111, 630
SduI GDGCHC 1 cut(s) 223
SfaNI GCATC 1 cut(s) 181
SinI GGWCC 2 cut(s) 20, 74
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 1 cut(s) 82
SsiI CCGC 8 cut(s) 5, 213, 324, 335, 543, 560, 800, 855
SspMI CTAG 1 cut(s) 480
StyD4I CCNGG 2 cut(s) 109, 628
StyI CCWWGG 1 cut(s) 23
TaaI ACNGT 5 cut(s) 266, 346, 498, 553, 757
TaiI ACGT 2 cut(s) 142, 739
TaqI TCGA 4 cut(s) 104, 115, 465, 650
TaqII GACCGA 1 cut(s) 91
TasI AATT 1 cut(s) 82
TatI WGTACW 1 cut(s) 435
TauI GCSGC 1 cut(s) 858
TfiI GAWTC 7 cut(s) 106, 404, 462, 476, 487, 825, 848
Tru1I TTAA 6 cut(s) 15, 261, 285, 309, 522, 711
Tru9I TTAA 6 cut(s) 15, 261, 285, 309, 522, 711
TscAI CASTG 1 cut(s) 299
TseFI GTSAC 3 cut(s) 346, 492, 621
TseI GCWGC 3 cut(s) 46, 321, 562
Tsp45I GTSAC 3 cut(s) 346, 492, 621
TspDTI ATGAA 1 cut(s) 719
TspGWI ACGGA 6 cut(s) 87, 287, 365, 371, 474, 480
TspRI CASTG 1 cut(s) 299
Vha464I CTTAAG 1 cut(s) 308
VpaK11BI GGWCC 2 cut(s) 20, 74
VspI ATTAAT 1 cut(s) 711
XspI CTAG 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.