AT3G53790
MYB Family

Telomere repeat-binding protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
N/A
Physical Location & Seq
Forward (+)
19928478 .. 19930267
1790 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G53790.1

Sequence Viewer

Length: 1203 bp
ATGGTGGACTGTGGTGTCGATATTTACCAACTTCCTGTTGTTCCTAGGGCATGTAGATCACCCAGAGGACGCAGGCTAAAAATTATGAGAAAACAAAGATCGGAGTTCGAGGTTTTAGCCCAAGTGGCTGGAAGATTCTCAGGTGAGCGTAAAAACCGAATTGTTATCGGCTCGTTGGCTCACGAAACAAAGGAGACGAAGGACGATAATGTCGTCGTCAATAACTTCTTGGAGACAATGGAAGTTGAGGTTAAGCCGCAACCTGGTCTGGAGAACCTTTCTCAGGTGTTATTGTCTAAGGACTGGTTAGCTCTTGGCCCTTCCATGCCTAACTCGCCAATCACACAAGAAGAAAACTTTGATTCACGTTCCAAGATCGATAGTAAAAGAAAGGTGAGTCACTTAAAAGAGCGAGGTTCGTGTATTAGCCAAGAATCGCAGAATATGTATCCTTTGAAGAAACGAAAGCTGTTTTACCAAAATCATTCATCTGAATCACATGATACTCCATGTACCGTGAAATTCGGTATTAAGTCGTTGAATATCTCGGAGCTATTGGTAGACGTTCCCGAATCAGCCACGGTTGGCTCACTGAAACTAGCGGTATTGGAGGCGGTAACGCAGATTCTCAAGGGTGGATTAAACATTGGAGTGCTCTTTCAAGGTAAAACCATCGTTGATGACTCCAAAACGCTTCTTCAGATTGGGATCCCATACGATGATGACGATGACGAAAACCTCGGTTCTTTGGGATTCATGCTAGAACCGCAAAAATCAGAAACAACAACAATAACAACGTTAACCACTGTTTCCCCGAGAACACGACTTAGACAAAATCAGGTCCTAGGGTCCGTGGATAGCACTGAGGCAGTAGCAGCTAAATCCGTGGTTCCAGTACGTATGAAACCGGCCTGGCAGCCAGAGATGGTTCAACGGAGAATAAGACGGCCATTCACTGTCTCAGAAGTAGAAGCTTTGGTTCAGGCCGTAGAGAGGCTCGGCACCGGAAGGTGGCGCGACGTGAAGTCTCATGCATTTAACCATGTAAATCATCGTACCTACGTTGACCTCAAGGATAAATGGAAAACGTTGGTTCACACGGCAAAGATATCAGCAAGGCAAAGGAGAGGCGAACCTGTGCCTCAAGACCTTCTTGATAGGGTTTTAGCTGCTCATGCTTTCTGGTCTGACCGGACCGGATGA

Protein Analysis

400

Amino Acids

45.0

Weight (kDa)

9.36

Isoelectric Point (pI)

45.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiquitin_TPR1 PF23603 172 - 238 4.9e-29 Telomere repeat-binding protein 1-like, ubiquitin-like domain
Myb_DNA-binding PF00249 315 - 364 7.2e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 14, 209
AccB1I GGYRCC 1 cut(s) 1001
AccI GTMKAC 1 cut(s) 561
AccII CGCG 1 cut(s) 1017
AciI CCGC 4 cut(s) 257, 602, 614, 767
AclI AACGTT 2 cut(s) 797, 1088
AclWI GGATC 2 cut(s) 703, 716
AcoI YGGCCR 1 cut(s) 947
AcsI RAATTY 1 cut(s) 521
AcuI CTGAAG 1 cut(s) 683
AfaI GTAC 3 cut(s) 514, 897, 1057
AfiI CCNNNNNNNGG 4 cut(s) 263, 283, 993, 1011
AgsI TTSAA 4 cut(s) 457, 541, 662, 932
AhdI GACNNNNNGTC 1 cut(s) 1024
AjiI CACGTC 1 cut(s) 1021
AjnI CCWGG 2 cut(s) 262, 911
AluBI AGCT 6 cut(s) 311, 469, 553, 878, 974, 1169
AluI AGCT 6 cut(s) 311, 469, 553, 878, 974, 1169
Alw21I GWGCWC 1 cut(s) 657
Alw26I GTCTC 4 cut(s) 188, 227, 964, 1032
AlwI GGATC 2 cut(s) 703, 716
Ama87I CYCGRG 1 cut(s) 814
AoxI GGCC 4 cut(s) 316, 909, 947, 984
ApeKI GCWGC 3 cut(s) 875, 916, 1169
ApoI RAATTY 1 cut(s) 521
AspA2I CCTAGG 2 cut(s) 44, 844
AspLEI GCGC 1 cut(s) 1017
AspS9I GGNCC 4 cut(s) 317, 841, 849, 1194
AsuHPI GGTGA 3 cut(s) 51, 155, 406
AvaI CYCGRG 1 cut(s) 814
AvaII GGWCC 3 cut(s) 841, 849, 1194
AvrII CCTAGG 2 cut(s) 44, 844
BamHI GGATCC 1 cut(s) 708
BanI GGYRCC 1 cut(s) 1001
Bbv12I GWGCWC 1 cut(s) 657
BbvI GCAGC 3 cut(s) 887, 928, 1156
BccI CCATC 2 cut(s) 680, 919
BceAI ACGGC 3 cut(s) 962, 971, 1116
BciT130I CCWGG 2 cut(s) 264, 913
BciVI GTATCC 1 cut(s) 459
BcoDI GTCTC 4 cut(s) 188, 227, 964, 1032
BfaI CTAG 4 cut(s) 45, 599, 761, 845
BfuI GTATCC 1 cut(s) 459
BglI GCCNNNNNGGC 1 cut(s) 125
BisI GCNGC 4 cut(s) 257, 876, 917, 1170
BlnI CCTAGG 2 cut(s) 44, 844
BlsI GCNGC 4 cut(s) 258, 877, 918, 1171
Bme1390I CCNGG 2 cut(s) 264, 913
Bme18I GGWCC 3 cut(s) 841, 849, 1194
BmeRI GACNNNNNGTC 1 cut(s) 1024
BmeT110I CYCGRG 1 cut(s) 814
BmgBI CACGTC 1 cut(s) 1021
BmgT120I GGNCC 4 cut(s) 317, 841, 849, 1194
BmiI GGNNCC 4 cut(s) 710, 850, 891, 1003
BmrFI CCNGG 2 cut(s) 264, 913
BpmI CTGGAG 1 cut(s) 290
BpuEI CTTGAG 3 cut(s) 614, 1055, 1128
Bsa29I ATCGAT 1 cut(s) 378
BsaAI YACGTR 1 cut(s) 899
BsaBI GATNNNNATC 1 cut(s) 707
BsaJI CCNNGG 6 cut(s) 44, 579, 739, 844, 852, 885
BsaWI WCCGGW 3 cut(s) 1004, 1191, 1196
Bsc4I CCNNNNNNNGG 4 cut(s) 263, 283, 993, 1011
Bse118I RCCGGY 1 cut(s) 907
Bse1I ACTGG 2 cut(s) 308, 893
Bse8I GATNNNNATC 1 cut(s) 707
BseBI CCWGG 2 cut(s) 264, 913
BseCI ATCGAT 1 cut(s) 378
BseDI CCNNGG 6 cut(s) 44, 579, 739, 844, 852, 885
BseJI GATNNNNATC 1 cut(s) 707
BseLI CCNNNNNNNGG 4 cut(s) 263, 283, 993, 1011
BseMII CTCAG 4 cut(s) 153, 296, 855, 975
BseNI ACTGG 2 cut(s) 308, 893
BseXI GCAGC 3 cut(s) 887, 928, 1156
Bsh1236I CGCG 1 cut(s) 1017
BshFI GGCC 4 cut(s) 318, 911, 949, 986
BshNI GGYRCC 1 cut(s) 1001
BshVI ATCGAT 1 cut(s) 378
BsiHKAI GWGCWC 1 cut(s) 657
BsiHKCI CYCGRG 1 cut(s) 814
BsiSI CCGG 4 cut(s) 908, 1005, 1192, 1197
BslI CCNNNNNNNGG 4 cut(s) 263, 283, 993, 1011
BsmAI GTCTC 4 cut(s) 188, 227, 964, 1032
BsmBI CGTCTC 1 cut(s) 188
BsnI GGCC 4 cut(s) 318, 911, 949, 986
BsoBI CYCGRG 1 cut(s) 814
Bsp1286I GDGCHC 1 cut(s) 657
Bsp143I GATC 4 cut(s) 56, 98, 375, 708
BspACI CCGC 4 cut(s) 257, 602, 614, 767
BspANI GGCC 4 cut(s) 318, 911, 949, 986
BspCNI CTCAG 4 cut(s) 152, 295, 856, 974
BspDI ATCGAT 1 cut(s) 378
BspFNI CGCG 1 cut(s) 1017
BspLI GGNNCC 4 cut(s) 710, 850, 891, 1003
BspPI GGATC 2 cut(s) 703, 716
BspT107I GGYRCC 1 cut(s) 1001
BsrFI RCCGGY 1 cut(s) 907
BsrI ACTGG 2 cut(s) 308, 893
BssAI RCCGGY 1 cut(s) 907
BssECI CCNNGG 6 cut(s) 44, 579, 739, 844, 852, 885
BssMI GATC 4 cut(s) 56, 98, 375, 708
BssT1I CCWWGG 2 cut(s) 44, 844
Bst2UI CCWGG 2 cut(s) 264, 913
Bst4CI ACNGT 5 cut(s) 11, 517, 583, 808, 958
BstBAI YACGTR 1 cut(s) 899
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 6 cut(s) 139, 282, 297, 827, 864, 961
BstDSI CCRYGG 3 cut(s) 579, 852, 885
BstENI CCTNNNNNAGG 1 cut(s) 281
BstFNI CGCG 1 cut(s) 1017
BstHHI GCGC 1 cut(s) 1017
BstKTI GATC 4 cut(s) 59, 101, 378, 711
BstMAI GTCTC 4 cut(s) 188, 227, 964, 1032
BstMBI GATC 4 cut(s) 56, 98, 375, 708
BstMWI GCNNNNNNNGC 5 cut(s) 125, 334, 766, 875, 1175
BstNI CCWGG 2 cut(s) 264, 913
BstNSI RCATGY 1 cut(s) 54
BstSCI CCNGG 2 cut(s) 262, 911
BstSNI TACGTA 1 cut(s) 899
BstUI CGCG 1 cut(s) 1017
BstV1I GCAGC 3 cut(s) 887, 928, 1156
BstX2I RGATCY 1 cut(s) 708
BstXI CCANNNNNNTGG 1 cut(s) 128
BstYI RGATCY 1 cut(s) 708
Bsu15I ATCGAT 1 cut(s) 378
BsuI GTATCC 1 cut(s) 459
BsuRI GGCC 4 cut(s) 318, 911, 949, 986
BsuTUI ATCGAT 1 cut(s) 378
BtgI CCRYGG 3 cut(s) 579, 852, 885
BtrI CACGTC 1 cut(s) 1021
BtsIMutI CAGTG 4 cut(s) 590, 804, 861, 954
Cac8I GCNNGC 1 cut(s) 74
CfoI GCGC 1 cut(s) 1017
Cfr10I RCCGGY 1 cut(s) 907
Cfr13I GGNCC 4 cut(s) 317, 841, 849, 1194
ClaI ATCGAT 1 cut(s) 378
CpoI CGGWCCG 1 cut(s) 1194
CseI GACGC 1 cut(s) 78
CsiI ACCWGGT 1 cut(s) 262
Csp6I GTAC 3 cut(s) 513, 896, 1056
CspI CGGWCCG 1 cut(s) 1194
CviAII CATG 8 cut(s) 51, 325, 500, 510, 757, 1031, 1043, 1175
CviQI GTAC 3 cut(s) 513, 896, 1056
DdeI CTNAG 6 cut(s) 139, 282, 297, 827, 864, 961
DpnI GATC 4 cut(s) 58, 100, 377, 710
DpnII GATC 4 cut(s) 56, 98, 375, 708
DrdI GACNNNNNNGTC 2 cut(s) 14, 209
DriI GACNNNNNGTC 1 cut(s) 1024
DseDI GACNNNNNNGTC 2 cut(s) 14, 209
EaeI YGGCCR 1 cut(s) 947
Eam1105I GACNNNNNGTC 1 cut(s) 1024
Eco105I TACGTA 1 cut(s) 899
Eco130I CCWWGG 2 cut(s) 44, 844
Eco32I GATATC 1 cut(s) 1110
Eco47I GGWCC 3 cut(s) 841, 849, 1194
Eco57I CTGAAG 1 cut(s) 683
Eco88I CYCGRG 1 cut(s) 814
EcoNI CCTNNNNNAGG 1 cut(s) 281
EcoO109I RGGNCCY 1 cut(s) 841
EcoRII CCWGG 2 cut(s) 262, 911
EcoRV GATATC 1 cut(s) 1110
EcoT14I CCWWGG 2 cut(s) 44, 844
EcoT22I ATGCAT 1 cut(s) 1036
ErhI CCWWGG 2 cut(s) 44, 844
Esp3I CGTCTC 1 cut(s) 188
FaeI CATG 8 cut(s) 54, 328, 503, 513, 760, 1034, 1046, 1178
FalI AAGNNNNNCTT 2 cut(s) 1137, 1169
FatI CATG 8 cut(s) 50, 324, 499, 509, 756, 1030, 1042, 1174
FblI GTMKAC 1 cut(s) 561
Fnu4HI GCNGC 4 cut(s) 257, 876, 917, 1170
Fsp4HI GCNGC 4 cut(s) 257, 876, 917, 1170
FspBI CTAG 4 cut(s) 45, 599, 761, 845
GlaI GCGC 1 cut(s) 1016
GluI GCNGC 4 cut(s) 257, 876, 917, 1170
GsuI CTGGAG 1 cut(s) 290
HaeIII GGCC 4 cut(s) 318, 911, 949, 986
HapII CCGG 4 cut(s) 908, 1005, 1192, 1197
HgaI GACGC 1 cut(s) 78
HhaI GCGC 1 cut(s) 1017
Hin1II CATG 8 cut(s) 54, 328, 503, 513, 760, 1034, 1046, 1178
Hin6I GCGC 1 cut(s) 1015
HinP1I GCGC 1 cut(s) 1015
HincII GTYRAC 2 cut(s) 801, 1066
HindII GTYRAC 2 cut(s) 801, 1066
HindIII AAGCTT 1 cut(s) 972
HinfI GANTC 9 cut(s) 135, 362, 397, 434, 494, 572, 625, 683, 753
HpaI GTTAAC 1 cut(s) 801
HpaII CCGG 4 cut(s) 908, 1005, 1192, 1197
HphI GGTGA 3 cut(s) 51, 155, 406
Hpy166II GTNNAC 5 cut(s) 7, 562, 801, 1066, 1096
Hpy188I TCNGA 7 cut(s) 103, 493, 550, 702, 778, 964, 1189
Hpy188III TCNNGA 5 cut(s) 182, 269, 569, 1145, 1154
Hpy8I GTNNAC 5 cut(s) 7, 562, 801, 1066, 1096
Hpy99I CGWCG 2 cut(s) 218, 1022
HpyAV CCTTC 4 cut(s) 193, 330, 1002, 1160
HpyCH4III ACNGT 5 cut(s) 11, 517, 583, 808, 958
HpyCH4IV ACGT 7 cut(s) 367, 564, 797, 898, 1020, 1062, 1088
HpyCH4V TGCA 1 cut(s) 1034
HpyF10VI GCNNNNNNNGC 5 cut(s) 125, 334, 766, 875, 1175
HpyF3I CTNAG 6 cut(s) 139, 282, 297, 827, 864, 961
HpySE526I ACGT 7 cut(s) 367, 564, 797, 898, 1020, 1062, 1088
Hsp92II CATG 8 cut(s) 54, 328, 503, 513, 760, 1034, 1046, 1178
HspAI GCGC 1 cut(s) 1015
KspAI GTTAAC 1 cut(s) 801
Kzo9I GATC 4 cut(s) 56, 98, 375, 708
LmnI GCTCC 1 cut(s) 550
Lsp1109I GCAGC 3 cut(s) 887, 928, 1156
MabI ACCWGGT 1 cut(s) 262
MaeI CTAG 4 cut(s) 45, 599, 761, 845
MaeII ACGT 7 cut(s) 367, 564, 797, 898, 1020, 1062, 1088
MaeIII GTNAC 2 cut(s) 398, 616
MalI GATC 4 cut(s) 58, 100, 377, 710
MboI GATC 4 cut(s) 56, 98, 375, 708
MboII GAAGA 4 cut(s) 144, 362, 469, 689
MflI RGATCY 1 cut(s) 708
MhlI GDGCHC 1 cut(s) 657
MluCI AATT 3 cut(s) 81, 159, 521
MlyI GAGTC 2 cut(s) 406, 677
Mph1103I ATGCAT 1 cut(s) 1036
MseI TTAA 6 cut(s) 252, 404, 531, 641, 800, 1038
MslI CAYNNNNRTG 1 cut(s) 650
MspI CCGG 4 cut(s) 908, 1005, 1192, 1197
MspR9I CCNGG 2 cut(s) 264, 913
MvaI CCWGG 2 cut(s) 264, 913
MvnI CGCG 1 cut(s) 1017
MwoI GCNNNNNNNGC 5 cut(s) 125, 334, 766, 875, 1175
NdeII GATC 4 cut(s) 56, 98, 375, 708
NlaIII CATG 8 cut(s) 54, 328, 503, 513, 760, 1034, 1046, 1178
NlaIV GGNNCC 4 cut(s) 710, 850, 891, 1003
NmeAIII GCCGAG 1 cut(s) 978
NmuCI GTSAC 1 cut(s) 398
NsiI ATGCAT 1 cut(s) 1036
NspI RCATGY 1 cut(s) 54
PcsI WCGNNNNNNNCGW 2 cut(s) 210, 723
PfeI GAWTC 7 cut(s) 135, 362, 434, 494, 572, 625, 753
PkrI GCNGC 4 cut(s) 258, 877, 918, 1171
PleI GAGTC 2 cut(s) 405, 677
PpsI GAGTC 2 cut(s) 405, 677
Ppu21I YACGTR 1 cut(s) 899
PpuMI RGGWCCY 1 cut(s) 841
Psp1406I AACGTT 2 cut(s) 797, 1088
Psp5II RGGWCCY 1 cut(s) 841
Psp6I CCWGG 2 cut(s) 262, 911
PspGI CCWGG 2 cut(s) 262, 911
PspN4I GGNNCC 4 cut(s) 710, 850, 891, 1003
PspPI GGNCC 4 cut(s) 317, 841, 849, 1194
PspPPI RGGWCCY 1 cut(s) 841
PsuI RGATCY 1 cut(s) 708
RsaI GTAC 3 cut(s) 514, 897, 1057
RsaNI GTAC 3 cut(s) 513, 896, 1056
RseI CAYNNNNRTG 1 cut(s) 650
Rsr2I CGGWCCG 1 cut(s) 1194
RsrII CGGWCCG 1 cut(s) 1194
SaqAI TTAA 6 cut(s) 252, 404, 531, 641, 800, 1038
SatI GCNGC 4 cut(s) 257, 876, 917, 1170
Sau3AI GATC 4 cut(s) 56, 98, 375, 708
Sau96I GGNCC 4 cut(s) 317, 841, 849, 1194
SchI GAGTC 2 cut(s) 406, 677
ScrFI CCNGG 2 cut(s) 264, 913
SduI GDGCHC 1 cut(s) 657
SexAI ACCWGGT 1 cut(s) 262
SinI GGWCC 3 cut(s) 841, 849, 1194
SmiMI CAYNNNNRTG 1 cut(s) 650
SmlI CTYRAG 3 cut(s) 629, 1070, 1143
SmoI CTYRAG 3 cut(s) 629, 1070, 1143
SnaBI TACGTA 1 cut(s) 899
Sse9I AATT 3 cut(s) 81, 159, 521
SsiI CCGC 4 cut(s) 257, 602, 614, 767
SspMI CTAG 4 cut(s) 45, 599, 761, 845
StyD4I CCNGG 2 cut(s) 262, 911
StyI CCWWGG 2 cut(s) 44, 844
TaaI ACNGT 5 cut(s) 11, 517, 583, 808, 958
TaiI ACGT 7 cut(s) 370, 567, 800, 901, 1023, 1065, 1091
TaqI TCGA 3 cut(s) 18, 108, 378
TasI AATT 3 cut(s) 81, 159, 521
TauI GCSGC 1 cut(s) 259
TfiI GAWTC 7 cut(s) 135, 362, 434, 494, 572, 625, 753
Tru1I TTAA 6 cut(s) 252, 404, 531, 641, 800, 1038
Tru9I TTAA 6 cut(s) 252, 404, 531, 641, 800, 1038
TscAI CASTG 4 cut(s) 597, 811, 868, 961
TseFI GTSAC 1 cut(s) 398
TseI GCWGC 3 cut(s) 875, 916, 1169
Tsp45I GTSAC 1 cut(s) 398
TspDTI ATGAA 3 cut(s) 477, 745, 917
TspGWI ACGGA 3 cut(s) 841, 874, 949
TspRI CASTG 4 cut(s) 597, 811, 868, 961
VpaK11BI GGWCC 3 cut(s) 841, 849, 1194
XagI CCTNNNNNAGG 1 cut(s) 281
XapI RAATTY 1 cut(s) 521
XceI RCATGY 1 cut(s) 54
XmaJI CCTAGG 2 cut(s) 44, 844
XmiI GTMKAC 1 cut(s) 561
XspI CTAG 4 cut(s) 45, 599, 761, 845
Zsp2I ATGCAT 1 cut(s) 1036
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.