AT3G53810

Lectin-domain containing receptor kinase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
N/A
Physical Location & Seq
Reverse (-)
19932970 .. 19935392
2423 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G53810.1

Sequence Viewer

Length: 2034 bp
ATGTTCGTCAAGCTCAAGCTCATCTTCTTCTTCTTCCTACTCTGTCAAATTATGATTTCTTCCTCTCAAAATCTCAACTTCACCTACAATGGTTTCCATCCTCCATTAACAGATATCTCACTCCAAGGTCTCGCAACAGTAACACCCAATGGTCTCTTGAAGCTTACCAACACATCGGTACAAAAAACCGGTCACGCCTTCTGTACTGAACGAATCCGGTTCAAAGATTCCCAAAACGGCAACGTATCATCCTTCTCCACAACCTTCGTCTTCGCGATACATTCTCAGATCCCAACACTAAGCGGCCATGGAATCGCCTTCGTTGTAGCTCCAACGCTAGGTCTTCCTTTTGCACTTCCTAGTCAATACATCGGTCTCTTCAACATCTCTAACAATGGTAACGACACGAATCACATCTTTGCCGTCGAATTCGATACAATCCAGAGTAGCGAGTTTGGAGATCCAAACGATAATCACGTCGGAATCGATCTCAACGGTTTACGATCGGCGAATTACTCGACGGCGGGATATAGGGATGATCACGATAAGTTTCAGAATCTGAGTTTGATTAGTCGCAAACGGATCCAAGTTTGGATCGATTACGATAATCGTAGTCATCGAATTGATGTCACCGTGGCTCCGTTTGATTCTGATAAACCTAGAAAACCTCTAGTTTCGTATGTGAGAGATCTTTCTTCGATTCTTCTAGAAGATATGTATGTAGGTTTCTCATCTGCGACTGGTTCAGTTCTCTCGGAGCATTTCTTAGTCGGATGGAGTTTCCGGTTAAACGGAGAAGCTCCGATGCTCTCGTTATCGAAACTCCCGAAGCTTCCTCGATTTGAGCCTAGAAGAATCTCTGAATTCTACAAAATCGGTATGCCTTTGATTTCACTATCTCTGATCTTCTCTATCATCTTCCTCGCTTTCTACATCGTGAGGAGGAAGAAGAAGTACGAGGAAGAGCTTGATGATTGGGAAACAGAGTTTGGGAAGAATCGATTCAGATTCAAGGAGCTCTATCACGCGACCAAAGGTTTTAAGGAGAAGGATCTTCTCGGCTCCGGTGGATTTGGGAGAGTTTACAGAGGCATTTTACCAACGACGAAGCTTGAAGTCGCTGTGAAGAGAGTCTCACATGATTCAAAACAAGGTATGAAAGAGTTTGTGGCGGAGATTGTGAGTATTGGTAGGATGAGTCACCGGAATTTAGTTCCTCTCTTGGGTTACTGTCGCCGGAGAGGAGAGCTTCTTTTGGTTTACGATTACATGCCTAATGGGAGCTTAGATAAGTATCTTTACAACAATCCGGAGACTACCTTAGATTGGAAACAAAGATCTACGATTATCAAAGGAGTTGCTTCAGGATTGTTCTATCTTCATGAGGAATGGGAACAAGTTGTGATTCACCGTGACGTGAAAGCTAGCAATGTTCTGTTAGATGCTGATTTCAATGGTAGACTCGGTGATTTTGGGTTGGCTCGGTTGTATGATCACGGCTCGGATCCTCAGACCACTCACGTTGTTGGAACATTGGGTTACTTAGCACCTGAACATTCCCGGACTGGACGTGCCACTACCACGACTGATGTCTATGCGTTTGGTGCGTTTCTTTTAGAAGTTGTTTCCGGTAGACGACCCATCGAGTTCCATAGTGCAAGCGATGATACGTTCTTGCTTGTGGAATGGGTTTTCAGTTTGTGGCTCAGAGGTAACATAATGGAAGCGAAAGATCCGAAGCTCGGTTCTTCAGGTTATGATCTTGAAGAGGTTGAAATGGTATTGAAACTCGGTCTGTTGTGTTCGCATTCAGACCCTCGGGCTAGACCAAGTATGAGGCAGGTCTTACAATATCTAAGAGGAGACATGGCACTGCCTGAATTAACGCCCTTGGATTTGTCGGCGGGGAGCGTGATGAATCTGGGAGGCCGGGACGGTTTTAGCGGTATTGCAATGACTGATTTTTCCACTGTGTTTAAAGGGTTTACCGGCGGATCTTCCATTGCTGACTCTCTACTCTCCGGTGGGAGGTGA

Protein Analysis

677

Amino Acids

75.98

Weight (kDa)

7.33

Isoelectric Point (pI)

34.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 25 - 276 1.6e-82 Legume lectin domain
Lectin_L-type_dom PF18483 39 - 251 4.1e-06 Legume lectin beta-barrel domain
Pkinase PF00069 347 - 617 9.5e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 350 - 618 2.9e-43 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1831
AccI GTMKAC 2 cut(s) 1459, 1633
AccII CGCG 2 cut(s) 275, 1028
AccIII TCCGGA 1 cut(s) 1309
AciI CCGC 6 cut(s) 303, 524, 1172, 1904, 1944, 1992
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 3 cut(s) 428, 863, 1207
AcuI CTGAAG 2 cut(s) 1347, 1734
AfaI GTAC 3 cut(s) 180, 205, 956
AfiI CCNNNNNNNGG 5 cut(s) 338, 1223, 1326, 1742, 2028
AgeI ACCGGT 1 cut(s) 188
AjiI CACGTC 3 cut(s) 478, 1417, 1571
AjuI GAANNNNNNNTTGG 2 cut(s) 972, 1004
Alw21I GWGCWC 1 cut(s) 1020
Alw26I GTCTC 6 cut(s) 134, 158, 380, 1138, 1307, 1857
AlwNI CAGNNNCTG 1 cut(s) 559
Ama87I CYCGRG 1 cut(s) 1818
Aor13HI TCCGGA 1 cut(s) 1309
AoxI GGCC 2 cut(s) 304, 1927
ApoI RAATTY 3 cut(s) 428, 863, 1207
ArsI GACNNNNNNTTYG 2 cut(s) 175, 207
AsiGI ACCGGT 1 cut(s) 188
Asp700I GAANNNNTTC 1 cut(s) 1001
AsuC2I CCSGG 2 cut(s) 1561, 1931
AsuHPI GGTGA 5 cut(s) 73, 622, 1193, 1400, 1478
AsuNHI GCTAGC 1 cut(s) 1424
AvaI CYCGRG 1 cut(s) 1818
BamHI GGATCC 2 cut(s) 582, 1504
BanII GRGCYC 1 cut(s) 1020
BarI GAAGNNNNNNTAC 2 cut(s) 938, 970
BbsI GAAGAC 2 cut(s) 262, 335
Bbv12I GWGCWC 1 cut(s) 1020
BccI CCATC 3 cut(s) 105, 768, 1649
BceAI ACGGC 4 cut(s) 253, 407, 537, 1513
BclI TGATCA 2 cut(s) 538, 1492
BcnI CCSGG 2 cut(s) 1561, 1931
BcoDI GTCTC 6 cut(s) 134, 158, 380, 1138, 1307, 1857
BfaI CTAG 8 cut(s) 338, 360, 660, 671, 707, 849, 1425, 1824
BfuAI ACCTGC 1 cut(s) 1831
BglII AGATCT 2 cut(s) 688, 1337
BisI GCNGC 1 cut(s) 304
BlsI GCNGC 1 cut(s) 305
Bme1390I CCNGG 2 cut(s) 1561, 1931
BmeT110I CYCGRG 1 cut(s) 1818
BmgBI CACGTC 3 cut(s) 478, 1417, 1571
BmiI GGNNCC 4 cut(s) 584, 639, 1063, 1506
BmrFI CCNGG 2 cut(s) 1561, 1931
BmsI GCATC 2 cut(s) 795, 1432
BmtI GCTAGC 1 cut(s) 1428
BoxI GACNNNNGTC 1 cut(s) 1589
BpiI GAAGAC 2 cut(s) 262, 335
BpuMI CCSGG 2 cut(s) 1561, 1931
Bsa29I ATCGAT 3 cut(s) 486, 597, 1000
BsaBI GATNNNNATC 1 cut(s) 1293
BsaI GGTCTC 3 cut(s) 134, 158, 380
BsaJI CCNNGG 5 cut(s) 124, 307, 633, 1817, 1890
BsaWI WCCGGW 8 cut(s) 188, 216, 783, 1064, 1203, 1309, 1628, 2021
BsaXI ACNNNNNCTCC 2 cut(s) 622, 652
Bsc4I CCNNNNNNNGG 5 cut(s) 338, 1223, 1326, 1742, 2028
Bse118I RCCGGY 2 cut(s) 188, 1988
Bse1I ACTGG 2 cut(s) 745, 1570
Bse3DI GCAATG 3 cut(s) 1435, 1959, 2001
Bse8I GATNNNNATC 1 cut(s) 1293
BseAI TCCGGA 1 cut(s) 1309
BseCI ATCGAT 3 cut(s) 486, 597, 1000
BseDI CCNNGG 5 cut(s) 124, 307, 633, 1817, 1890
BseGI GGATG 5 cut(s) 97, 248, 541, 779, 1200
BseJI GATNNNNATC 1 cut(s) 1293
BseLI CCNNNNNNNGG 5 cut(s) 338, 1223, 1326, 1742, 2028
BseMI GCAATG 3 cut(s) 1435, 1959, 2001
BseMII CTCAG 4 cut(s) 299, 551, 1523, 1720
BseNI ACTGG 2 cut(s) 745, 1570
BseRI GAGGAG 3 cut(s) 955, 1257, 1875
Bsh1236I CGCG 2 cut(s) 275, 1028
Bsh1285I CGRYCG 1 cut(s) 506
BshFI GGCC 2 cut(s) 306, 1929
BshTI ACCGGT 1 cut(s) 188
BshVI ATCGAT 3 cut(s) 486, 597, 1000
BsiEI CGRYCG 1 cut(s) 506
BsiHKAI GWGCWC 1 cut(s) 1020
BsiHKCI CYCGRG 1 cut(s) 1818
BslFI GGGAC 1 cut(s) 1946
BslI CCNNNNNNNGG 5 cut(s) 338, 1223, 1326, 1742, 2028
BsmAI GTCTC 6 cut(s) 134, 158, 380, 1138, 1307, 1857
BsmFI GGGAC 1 cut(s) 1946
BsmI GAATGC 1 cut(s) 1807
BsnI GGCC 2 cut(s) 306, 1929
Bso31I GGTCTC 3 cut(s) 134, 158, 380
BsoBI CYCGRG 1 cut(s) 1818
Bsp1286I GDGCHC 1 cut(s) 1020
Bsp13I TCCGGA 1 cut(s) 1309
Bsp19I CCATGG 1 cut(s) 307
Bsp68I TCGCGA 1 cut(s) 275
BspACI CCGC 6 cut(s) 303, 524, 1172, 1904, 1944, 1992
BspANI GGCC 2 cut(s) 306, 1929
BspCNI CTCAG 4 cut(s) 298, 552, 1522, 1719
BspDI ATCGAT 3 cut(s) 486, 597, 1000
BspEI TCCGGA 1 cut(s) 1309
BspFNI CGCG 2 cut(s) 275, 1028
BspHI TCATGA 1 cut(s) 1381
BspLI GGNNCC 4 cut(s) 584, 639, 1063, 1506
BspMI ACCTGC 1 cut(s) 1831
BspOI GCTAGC 1 cut(s) 1428
BspQI GCTCTTC 1 cut(s) 957
BspTNI GGTCTC 3 cut(s) 134, 158, 380
BsrDI GCAATG 3 cut(s) 1435, 1959, 2001
BsrFI RCCGGY 2 cut(s) 188, 1988
BsrI ACTGG 2 cut(s) 745, 1570
BssAI RCCGGY 2 cut(s) 188, 1988
BssECI CCNNGG 5 cut(s) 124, 307, 633, 1817, 1890
BssT1I CCWWGG 3 cut(s) 124, 307, 1890
Bst4CI ACNGT 7 cut(s) 139, 497, 634, 1232, 1412, 1937, 1972
Bst6I CTCTTC 4 cut(s) 383, 957, 1121, 1761
BstC8I GCNNGC 2 cut(s) 1426, 1660
BstDSI CCRYGG 2 cut(s) 307, 633
BstF5I GGATG 5 cut(s) 97, 248, 541, 779, 1200
BstFNI CGCG 2 cut(s) 275, 1028
BstMAI GTCTC 6 cut(s) 134, 158, 380, 1138, 1307, 1857
BstMCI CGRYCG 1 cut(s) 506
BstMWI GCNNNNNNNGC 1 cut(s) 1604
BstNSI RCATGY 1 cut(s) 1273
BstPAI GACNNNNGTC 1 cut(s) 1589
BstSCI CCNGG 2 cut(s) 1559, 1929
BstUI CGCG 2 cut(s) 275, 1028
BstV2I GAAGAC 2 cut(s) 262, 335
BstX2I RGATCY 9 cut(s) 288, 460, 582, 688, 1051, 1337, 1504, 1732, 1994
BstYI RGATCY 9 cut(s) 288, 460, 582, 688, 1051, 1337, 1504, 1732, 1994
Bsu15I ATCGAT 3 cut(s) 486, 597, 1000
BsuRI GGCC 2 cut(s) 306, 1929
BsuTUI ATCGAT 3 cut(s) 486, 597, 1000
BtgI CCRYGG 2 cut(s) 307, 633
BtgZI GCGATG 1 cut(s) 1677
BtrI CACGTC 3 cut(s) 478, 1417, 1571
BtsCI GGATG 5 cut(s) 97, 248, 541, 779, 1200
BtsI GCAGTG 1 cut(s) 1871
BtsIMutI CAGTG 2 cut(s) 1871, 1968
BtuMI TCGCGA 1 cut(s) 275
BveI ACCTGC 1 cut(s) 1831
Cac8I GCNNGC 2 cut(s) 1426, 1660
CaiI CAGNNNCTG 1 cut(s) 559
CciI TCATGA 1 cut(s) 1381
Cfr10I RCCGGY 2 cut(s) 188, 1988
ClaI ATCGAT 3 cut(s) 486, 597, 1000
Csp6I GTAC 3 cut(s) 179, 204, 955
CspAI ACCGGT 1 cut(s) 188
CspCI CAANNNNNGTGG 2 cut(s) 1504, 1539
CviAII CATG 5 cut(s) 308, 1139, 1270, 1382, 1867
CviQI GTAC 3 cut(s) 179, 204, 955
DraI TTTAAA 1 cut(s) 1978
EaeI YGGCCR 1 cut(s) 304
Eam1104I CTCTTC 4 cut(s) 383, 957, 1121, 1761
EarI CTCTTC 4 cut(s) 383, 957, 1121, 1761
EciI GGCGGA 2 cut(s) 1187, 2007
Ecl136II GAGCTC 1 cut(s) 1018
Eco130I CCWWGG 3 cut(s) 124, 307, 1890
Eco24I GRGCYC 1 cut(s) 1020
Eco31I GGTCTC 3 cut(s) 134, 158, 380
Eco32I GATATC 1 cut(s) 115
Eco53kI GAGCTC 1 cut(s) 1018
Eco57I CTGAAG 2 cut(s) 1347, 1734
Eco88I CYCGRG 1 cut(s) 1818
EcoICRI GAGCTC 1 cut(s) 1018
EcoRI GAATTC 2 cut(s) 428, 863
EcoRV GATATC 1 cut(s) 115
EcoT14I CCWWGG 3 cut(s) 124, 307, 1890
EcoT38I GRGCYC 1 cut(s) 1020
ErhI CCWWGG 3 cut(s) 124, 307, 1890
FaeI CATG 5 cut(s) 311, 1142, 1273, 1385, 1870
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FaqI GGGAC 1 cut(s) 1946
FatI CATG 5 cut(s) 307, 1138, 1269, 1381, 1866
FauI CCCGC 2 cut(s) 517, 1897
FbaI TGATCA 2 cut(s) 538, 1492
FblI GTMKAC 2 cut(s) 1459, 1633
Fnu4HI GCNGC 1 cut(s) 304
FokI GGATG 5 cut(s) 84, 235, 548, 786, 1207
FriOI GRGCYC 1 cut(s) 1020
Fsp4HI GCNGC 1 cut(s) 304
FspBI CTAG 8 cut(s) 338, 360, 660, 671, 707, 849, 1425, 1824
GluI GCNGC 1 cut(s) 304
HaeIII GGCC 2 cut(s) 306, 1929
Hin1II CATG 5 cut(s) 311, 1142, 1273, 1385, 1870
HindIII AAGCTT 3 cut(s) 161, 830, 1109
HphI GGTGA 5 cut(s) 73, 622, 1193, 1400, 1478
Hpy166II GTNNAC 6 cut(s) 500, 1084, 1261, 1460, 1634, 1986
Hpy8I GTNNAC 6 cut(s) 500, 1084, 1261, 1460, 1634, 1986
Hpy99I CGWCG 4 cut(s) 428, 482, 523, 1108
HpyAV CCTTC 5 cut(s) 208, 262, 274, 328, 1042
HpyCH4III ACNGT 7 cut(s) 139, 497, 634, 1232, 1412, 1937, 1972
HpyCH4IV ACGT 6 cut(s) 243, 477, 1416, 1521, 1570, 1670
HpyCH4V TGCA 3 cut(s) 353, 1658, 1952
HpyF10VI GCNNNNNNNGC 1 cut(s) 1604
HpySE526I ACGT 6 cut(s) 243, 477, 1416, 1521, 1570, 1670
Hsp92II CATG 5 cut(s) 311, 1142, 1273, 1385, 1870
Kpn2I TCCGGA 1 cut(s) 1309
Ksp22I TGATCA 2 cut(s) 538, 1492
LguI GCTCTTC 1 cut(s) 957
LmnI GCTCC 8 cut(s) 334, 643, 757, 805, 1015, 1067, 1281, 1908
LweI GCATC 2 cut(s) 795, 1432
MaeI CTAG 8 cut(s) 338, 360, 660, 671, 707, 849, 1425, 1824
MaeII ACGT 6 cut(s) 243, 477, 1416, 1521, 1570, 1670
MaeIII GTNAC 9 cut(s) 139, 191, 398, 628, 1199, 1226, 1412, 1538, 1712
MflI RGATCY 9 cut(s) 288, 460, 582, 688, 1051, 1337, 1504, 1732, 1994
MhlI GDGCHC 1 cut(s) 1020
MluCI AATT 7 cut(s) 48, 428, 511, 621, 863, 1207, 1880
MlyI GAGTC 4 cut(s) 1140, 1207, 1455, 2003
MmeI TCCRAC 4 cut(s) 356, 460, 751, 1507
MroI TCCGGA 1 cut(s) 1309
MroXI GAANNNNTTC 1 cut(s) 1001
MseI TTAA 5 cut(s) 107, 788, 1041, 1883, 1977
MspR9I CCNGG 2 cut(s) 1561, 1931
Mva1269I GAATGC 1 cut(s) 1807
MvnI CGCG 2 cut(s) 275, 1028
MwoI GCNNNNNNNGC 1 cut(s) 1604
NciI CCSGG 2 cut(s) 1561, 1931
NcoI CCATGG 1 cut(s) 307
NheI GCTAGC 1 cut(s) 1424
NlaIII CATG 5 cut(s) 311, 1142, 1273, 1385, 1870
NlaIV GGNNCC 4 cut(s) 584, 639, 1063, 1506
NmeAIII GCCGAG 1 cut(s) 1038
NmuCI GTSAC 4 cut(s) 191, 628, 1199, 1412
NruI TCGCGA 1 cut(s) 275
NspI RCATGY 1 cut(s) 1273
PagI TCATGA 1 cut(s) 1381
PciSI GCTCTTC 1 cut(s) 957
PcsI WCGNNNNNNNCGW 4 cut(s) 474, 483, 616, 824
PctI GAATGC 1 cut(s) 1807
PdmI GAANNNNTTC 1 cut(s) 1001
PfoI TCCNGGA 1 cut(s) 1559
PinAI ACCGGT 1 cut(s) 188
PkrI GCNGC 1 cut(s) 305
Ple19I CGATCG 1 cut(s) 506
PleI GAGTC 4 cut(s) 1139, 1206, 1455, 2003
PpsI GAGTC 4 cut(s) 1139, 1206, 1455, 2003
PshAI GACNNNNGTC 1 cut(s) 1589
Psp124BI GAGCTC 1 cut(s) 1020
PspN4I GGNNCC 4 cut(s) 584, 639, 1063, 1506
PstNI CAGNNNCTG 1 cut(s) 559
PsuI RGATCY 9 cut(s) 288, 460, 582, 688, 1051, 1337, 1504, 1732, 1994
PvuI CGATCG 1 cut(s) 506
RruI TCGCGA 1 cut(s) 275
RsaI GTAC 3 cut(s) 180, 205, 956
RsaNI GTAC 3 cut(s) 179, 204, 955
SacI GAGCTC 1 cut(s) 1020
SapI GCTCTTC 1 cut(s) 957
SaqAI TTAA 5 cut(s) 107, 788, 1041, 1883, 1977
SatI GCNGC 1 cut(s) 304
SchI GAGTC 4 cut(s) 1140, 1207, 1455, 2003
ScrFI CCNGG 2 cut(s) 1561, 1931
SduI GDGCHC 1 cut(s) 1020
SfaNI GCATC 2 cut(s) 795, 1432
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 7 cut(s) 48, 428, 511, 621, 863, 1207, 1880
SsiI CCGC 6 cut(s) 303, 524, 1172, 1904, 1944, 1992
SspMI CTAG 8 cut(s) 338, 360, 660, 671, 707, 849, 1425, 1824
SstI GAGCTC 1 cut(s) 1020
StyD4I CCNGG 2 cut(s) 1559, 1929
StyI CCWWGG 3 cut(s) 124, 307, 1890
TaaI ACNGT 7 cut(s) 139, 497, 634, 1232, 1412, 1937, 1972
TaiI ACGT 6 cut(s) 246, 480, 1419, 1524, 1573, 1673
TaqII GACCGA 2 cut(s) 362, 1781
TasI AATT 7 cut(s) 48, 428, 511, 621, 863, 1207, 1880
TatI WGTACW 1 cut(s) 203
TauI GCSGC 1 cut(s) 306
Tru1I TTAA 5 cut(s) 107, 788, 1041, 1883, 1977
Tru9I TTAA 5 cut(s) 107, 788, 1041, 1883, 1977
TscAI CASTG 2 cut(s) 1878, 1975
TseFI GTSAC 4 cut(s) 191, 628, 1199, 1412
Tsp45I GTSAC 4 cut(s) 191, 628, 1199, 1412
TspDTI ATGAA 3 cut(s) 1172, 1370, 1931
TspGWI ACGGA 3 cut(s) 595, 630, 807
TspRI CASTG 2 cut(s) 1878, 1975
XapI RAATTY 3 cut(s) 428, 863, 1207
XbaI TCTAGA 1 cut(s) 706
XceI RCATGY 1 cut(s) 1273
XmiI GTMKAC 2 cut(s) 1459, 1633
XmnI GAANNNNTTC 1 cut(s) 1001
XspI CTAG 8 cut(s) 338, 360, 660, 671, 707, 849, 1425, 1824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.