AT3G56100

leucine-rich repeat receptor-like protein kinase IMK3

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
N/A
Physical Location & Seq
Reverse (-)
20816866 .. 20819819
2954 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G56100.2

Sequence Viewer

Length: 1545 bp
ATGGAGTTTATCACCCAAAACCAAGCTATTACTTCTCTGAGTATGATCAACACCGACATTGATCAACCTAAGGCTTCACTTCGAAGCCGATTTCTCCTTCATCTAATCATATGCCTCCTCTTCTTCGTCCCTCCCTGCTCAAGCCAAGCCTGGGATGGTGTAGTGATAACACAAGCTGATTACCAAGGTCTTCAAGCAGTTAAACAAGAACTGATTGATCCAAGAGGCTTCTTGAGAAGCTGGAACGGTTCTGGATTCAGTGCTTGCTCTGGAGGCTGGGCTGGAATAAAATGTGCTCAAGGTCAAGTCATCGTCATTCAACTTCCATGGAAGAGTCTTGGAGGTAGAATCTCTGAGAAAATCGGACAGCTTCAAGCTCTTCGTAAGCTTAGTCTTCATGACAACAACCTTGGAGGTTCGATTCCAATGTCATTGGGACTCATTCCTAATCTTAGAGGAGTTCAGCTTTTCAACAACCGTCTCACTGGCTCAATCCCTGCTTCTCTCGGTGTATCACATTTCCTTCAAACGCTTGATCTCAGCAATAACTTGCTCTCTGAGATTATTCCACCGAATCTTGCTGACTCTTCTAAGCTTCTTAGGCTTAATCTCAGCTTTAATTCACTGTCTGGTCAAATCCCAGTGAGTCTCTCTCGGTCTTCTTCCCTTCAGTTTCTTGCTCTTGACCATAACAACCTCTCTGGTCCAATCTTAGATACTTGGGGTAGTAAGATCCGTGGAACCCTACCCTCTGAGCTAAGCAAACTCACTAAGCTTAGAAAAATGGATATTAGTGGTAACAGTGTTAGTGGCCATATCCCTGAAACCCTAGGGAACATTTCTTCTCTTATACATTTGGATTTGTCTCAAAACAAACTCACCGGAGAGATTCCTATTTCGATTTCTGACCTGGAAAGCCTGAACTTCTTCAATGTCTCTTATAACAACTTATCTGGTCCTGTTCCTACTCTCTTGTCCCAAAAGTTCAATTCCTCTTCTTTTGTCGGGAACTCACTGCTTTGCGGATACAGCGTTTCGACACCATGTCCTACTCTTCCTTCACCGTCTCCTGAAAAAGAAAGGAAACCATCCCACAGGAATCTGAGTACCAAAGACATCATCCTCATTGCGTCTGGAGCACTCCTCATAGTTATGCTTATCCTTGTTTGTGTTCTATGTTGCTTGCTGAGGAAGAAAGCCAATGAAACCAAAGCCAAGGGCGGAGAGGCTGGACCTGGAGCTGTAGCCGCAAAGACTGAGAAAGGAGGGGAAGCTGAAGCTGGAGGTGAAACTGGAGGGAAGCTGGTTCATTTTGATGGACCAATGGCGTTTACTGCAGATGATCTTTTGTGTGCAACAGCAGAGATAATGGGGAAAAGCACTTATGGGACTGTGTACAAAGCTACACTTGAAGATGGAAGTCAAGTAGCAGTGAAGAGATTGAGAGAAAGATCACCAAAAGTCAAAAAGAGTTTGAGAATGAGATTAACGTCTTGGGAAGAATCCGGCATCCGAATCTCCTTGCACTCAGAGCTTATTACTTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

514

Amino Acids

55.28

Weight (kDa)

9.07

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 59 - 98 4.8e-07 Leucine rich repeat N-terminal domain
LRR_8 PF13855 175 - 233 1.6e-06 Leucine rich repeat
LRR_8 PF13855 258 - 317 3.7e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 942
AciI CCGC 3 cut(s) 1023, 1221, 1248
AclWI GGATC 2 cut(s) 212, 727
AcoI YGGCCR 1 cut(s) 811
AcuI CTGAAG 2 cut(s) 653, 1296
AfaI GTAC 2 cut(s) 1108, 1397
AfiI CCNNNNNNNGG 1 cut(s) 151
AgsI TTSAA 8 cut(s) 194, 320, 374, 472, 527, 931, 988, 1412
AhdI GACNNNNNGTC 1 cut(s) 1044
AjnI CCWGG 3 cut(s) 149, 909, 1234
Alw21I GWGCWC 2 cut(s) 298, 1141
Alw26I GTCTC 5 cut(s) 485, 653, 870, 940, 1071
AlwI GGATC 2 cut(s) 212, 727
AoxI GGCC 1 cut(s) 811
Asp700I GAANNNNTTC 1 cut(s) 926
AspA2I CCTAGG 1 cut(s) 829
AspS9I GGNCC 4 cut(s) 704, 956, 1232, 1319
AsuHPI GGTGA 5 cut(s) 4, 871, 1053, 1298, 1446
AsuII TTCGAA 1 cut(s) 82
AvaII GGWCC 4 cut(s) 704, 956, 1232, 1319
AvrII CCTAGG 1 cut(s) 829
AxyI CCTNAGG 1 cut(s) 69
BalI TGGCCA 1 cut(s) 813
BbsI GAAGAC 3 cut(s) 182, 386, 651
Bbv12I GWGCWC 2 cut(s) 298, 1141
BbvCI CCTCAGC 1 cut(s) 1187
BccI CCATC 4 cut(s) 149, 1096, 1310, 1409
BciT130I CCWGG 3 cut(s) 151, 911, 1236
BciVI GTATCC 1 cut(s) 1019
BclI TGATCA 2 cut(s) 45, 61
BcoDI GTCTC 5 cut(s) 485, 653, 870, 940, 1071
BfaI CTAG 1 cut(s) 830
BfmI CTRYAG 2 cut(s) 1242, 1335
BfuI GTATCC 1 cut(s) 1019
BisI GCNGC 1 cut(s) 1248
BlnI CCTAGG 1 cut(s) 829
BlpI GCTNAGC 1 cut(s) 758
BlsI GCNGC 1 cut(s) 1249
Bme1390I CCNGG 3 cut(s) 151, 911, 1236
Bme18I GGWCC 4 cut(s) 704, 956, 1232, 1319
BmeRI GACNNNNNGTC 1 cut(s) 1044
BmgT120I GGNCC 4 cut(s) 704, 956, 1232, 1319
BmiI GGNNCC 1 cut(s) 742
BmrFI CCNGG 3 cut(s) 151, 911, 1236
BmrI ACTGGG 1 cut(s) 635
BmsI GCATC 1 cut(s) 1518
BmuI ACTGGG 1 cut(s) 635
BpiI GAAGAC 3 cut(s) 182, 386, 651
BplI GAGNNNNNCTC 4 cut(s) 637, 669, 1128, 1160
BpmI CTGGAG 5 cut(s) 291, 1155, 1257, 1302, 1314
Bpu10I CCTNAGC 1 cut(s) 1187
Bpu1102I GCTNAGC 1 cut(s) 758
Bpu14I TTCGAA 1 cut(s) 82
BpuEI CTTGAG 3 cut(s) 124, 253, 282
BsaJI CCNNGG 7 cut(s) 150, 184, 326, 409, 736, 829, 1215
BsaWI WCCGGW 1 cut(s) 881
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse1I ACTGG 3 cut(s) 490, 641, 1297
Bse21I CCTNAGG 1 cut(s) 69
Bse3DI GCAATG 1 cut(s) 1125
BseBI CCWGG 3 cut(s) 151, 911, 1236
BseDI CCNNGG 7 cut(s) 150, 184, 326, 409, 736, 829, 1215
BseGI GGATG 4 cut(s) 160, 1088, 1119, 1509
BseLI CCNNNNNNNGG 1 cut(s) 151
BseMI GCAATG 1 cut(s) 1125
BseNI ACTGG 3 cut(s) 490, 641, 1297
BseRI GAGGAG 3 cut(s) 107, 471, 1133
BseYI CCCAGC 1 cut(s) 276
BshFI GGCC 1 cut(s) 813
BsiHKAI GWGCWC 2 cut(s) 298, 1141
BsiSI CCGG 2 cut(s) 882, 1506
BslFI GGGAC 4 cut(s) 113, 450, 961, 1402
BslI CCNNNNNNNGG 1 cut(s) 151
BsmAI GTCTC 5 cut(s) 485, 653, 870, 940, 1071
BsmBI CGTCTC 2 cut(s) 485, 1071
BsmFI GGGAC 4 cut(s) 113, 450, 961, 1402
BsnI GGCC 1 cut(s) 813
Bsp119I TTCGAA 1 cut(s) 82
Bsp1286I GDGCHC 2 cut(s) 298, 1141
Bsp1407I TGTACA 1 cut(s) 1395
Bsp143I GATC 7 cut(s) 45, 61, 217, 535, 732, 1342, 1451
Bsp1720I GCTNAGC 1 cut(s) 758
Bsp19I CCATGG 1 cut(s) 326
BspACI CCGC 3 cut(s) 1023, 1221, 1248
BspANI GGCC 1 cut(s) 813
BspHI TCATGA 1 cut(s) 397
BspLI GGNNCC 1 cut(s) 742
BspMAI CTGCAG 1 cut(s) 1339
BspPI GGATC 2 cut(s) 212, 727
BspQI GCTCTTC 1 cut(s) 384
BspT104I TTCGAA 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 1125
BsrGI TGTACA 1 cut(s) 1395
BsrI ACTGG 3 cut(s) 490, 641, 1297
BssECI CCNNGG 7 cut(s) 150, 184, 326, 409, 736, 829, 1215
BssMI GATC 7 cut(s) 45, 61, 217, 535, 732, 1342, 1451
BssT1I CCWWGG 5 cut(s) 184, 326, 409, 829, 1215
Bst2UI CCWGG 3 cut(s) 151, 911, 1236
Bst4CI ACNGT 6 cut(s) 248, 479, 627, 803, 1065, 1393
Bst6I CTCTTC 7 cut(s) 125, 326, 384, 592, 1000, 1059, 1430
BstAUI TGTACA 1 cut(s) 1395
BstBI TTCGAA 1 cut(s) 82
BstC8I GCNNGC 2 cut(s) 265, 1184
BstDSI CCRYGG 2 cut(s) 326, 736
BstF5I GGATG 4 cut(s) 160, 1088, 1119, 1509
BstKTI GATC 7 cut(s) 48, 64, 220, 538, 735, 1345, 1454
BstMAI GTCTC 5 cut(s) 485, 653, 870, 940, 1071
BstMBI GATC 7 cut(s) 45, 61, 217, 535, 732, 1342, 1451
BstMWI GCNNNNNNNGC 7 cut(s) 273, 601, 1029, 1136, 1247, 1334, 1531
BstNI CCWGG 3 cut(s) 151, 911, 1236
BstSCI CCNGG 3 cut(s) 149, 909, 1234
BstSFI CTRYAG 2 cut(s) 1242, 1335
BstV2I GAAGAC 3 cut(s) 182, 386, 651
BstX2I RGATCY 1 cut(s) 732
BstYI RGATCY 1 cut(s) 732
Bsu36I CCTNAGG 1 cut(s) 69
BsuI GTATCC 1 cut(s) 1019
BsuRI GGCC 1 cut(s) 813
BtgI CCRYGG 2 cut(s) 326, 736
BtsCI GGATG 4 cut(s) 160, 1088, 1119, 1509
BtsI GCAGTG 2 cut(s) 1013, 1437
BtsIMutI CAGTG 7 cut(s) 265, 483, 623, 648, 808, 1013, 1437
Cac8I GCNNGC 2 cut(s) 265, 1184
CciI TCATGA 1 cut(s) 397
Cfr13I GGNCC 4 cut(s) 704, 956, 1232, 1319
CseI GACGC 1 cut(s) 1119
Csp6I GTAC 2 cut(s) 1107, 1396
CviAII CATG 3 cut(s) 327, 398, 1044
CviQI GTAC 2 cut(s) 1107, 1396
DpnI GATC 7 cut(s) 47, 63, 219, 537, 734, 1344, 1453
DpnII GATC 7 cut(s) 45, 61, 217, 535, 732, 1342, 1451
DriI GACNNNNNGTC 1 cut(s) 1044
EaeI YGGCCR 1 cut(s) 811
Eam1104I CTCTTC 7 cut(s) 125, 326, 384, 592, 1000, 1059, 1430
Eam1105I GACNNNNNGTC 1 cut(s) 1044
EarI CTCTTC 7 cut(s) 125, 326, 384, 592, 1000, 1059, 1430
EciI GGCGGA 1 cut(s) 1236
Eco130I CCWWGG 5 cut(s) 184, 326, 409, 829, 1215
Eco47I GGWCC 4 cut(s) 704, 956, 1232, 1319
Eco57I CTGAAG 2 cut(s) 653, 1296
Eco81I CCTNAGG 1 cut(s) 69
EcoRII CCWGG 3 cut(s) 149, 909, 1234
EcoT14I CCWWGG 5 cut(s) 184, 326, 409, 829, 1215
ErhI CCWWGG 5 cut(s) 184, 326, 409, 829, 1215
Esp3I CGTCTC 2 cut(s) 485, 1071
FaeI CATG 3 cut(s) 330, 401, 1047
FalI AAGNNNNNCTT 2 cut(s) 1392, 1424
FaqI GGGAC 4 cut(s) 113, 450, 961, 1402
FatI CATG 3 cut(s) 326, 397, 1043
FauNDI CATATG 1 cut(s) 110
FbaI TGATCA 2 cut(s) 45, 61
Fnu4HI GCNGC 1 cut(s) 1248
FokI GGATG 4 cut(s) 167, 1075, 1106, 1496
Fsp4HI GCNGC 1 cut(s) 1248
FspBI CTAG 1 cut(s) 830
GluI GCNGC 1 cut(s) 1248
GsaI CCCAGC 1 cut(s) 280
GsuI CTGGAG 5 cut(s) 291, 1155, 1257, 1302, 1314
HaeIII GGCC 1 cut(s) 813
HapII CCGG 2 cut(s) 882, 1506
HgaI GACGC 1 cut(s) 1119
Hin1II CATG 3 cut(s) 330, 401, 1047
HindIII AAGCTT 3 cut(s) 386, 593, 773
HpaII CCGG 2 cut(s) 882, 1506
HphI GGTGA 5 cut(s) 4, 871, 1053, 1298, 1446
Hpy166II GTNNAC 2 cut(s) 1332, 1396
Hpy188I TCNGA 9 cut(s) 39, 355, 365, 559, 754, 907, 1104, 1514, 1531
Hpy188III TCNNGA 8 cut(s) 232, 252, 270, 398, 683, 1006, 1070, 1134
Hpy8I GTNNAC 2 cut(s) 1332, 1396
HpyAV CCTTC 4 cut(s) 107, 533, 677, 1068
HpyCH4III ACNGT 6 cut(s) 248, 479, 627, 803, 1065, 1393
HpyCH4IV ACGT 1 cut(s) 1490
HpyCH4V TGCA 3 cut(s) 1337, 1355, 1525
HpyF10VI GCNNNNNNNGC 7 cut(s) 273, 601, 1029, 1136, 1247, 1334, 1531
HpySE526I ACGT 1 cut(s) 1490
Hsp92II CATG 3 cut(s) 330, 401, 1047
Ksp22I TGATCA 2 cut(s) 45, 61
Kzo9I GATC 7 cut(s) 45, 61, 217, 535, 732, 1342, 1451
LguI GCTCTTC 1 cut(s) 384
LmnI GCTCC 2 cut(s) 1136, 1238
LweI GCATC 1 cut(s) 1518
MaeI CTAG 1 cut(s) 830
MaeII ACGT 1 cut(s) 1490
MaeIII GTNAC 1 cut(s) 797
MalI GATC 7 cut(s) 47, 63, 219, 537, 734, 1344, 1453
MboI GATC 7 cut(s) 45, 61, 217, 535, 732, 1342, 1451
MflI RGATCY 1 cut(s) 732
MhlI GDGCHC 2 cut(s) 298, 1141
MlsI TGGCCA 1 cut(s) 813
MluCI AATT 2 cut(s) 619, 988
MluNI TGGCCA 1 cut(s) 813
MlyI GAGTC 4 cut(s) 343, 432, 578, 655
Mox20I TGGCCA 1 cut(s) 813
MroXI GAANNNNTTC 1 cut(s) 926
MscI TGGCCA 1 cut(s) 813
MseI TTAA 4 cut(s) 201, 606, 618, 1487
MslI CAYNNNNRTG 2 cut(s) 1151, 1314
Msp20I TGGCCA 1 cut(s) 813
MspI CCGG 2 cut(s) 882, 1506
MspR9I CCNGG 3 cut(s) 151, 911, 1236
MvaI CCWGG 3 cut(s) 151, 911, 1236
MwoI GCNNNNNNNGC 7 cut(s) 273, 601, 1029, 1136, 1247, 1334, 1531
NcoI CCATGG 1 cut(s) 326
NdeI CATATG 1 cut(s) 110
NdeII GATC 7 cut(s) 45, 61, 217, 535, 732, 1342, 1451
NlaIII CATG 3 cut(s) 330, 401, 1047
NlaIV GGNNCC 1 cut(s) 742
NspV TTCGAA 1 cut(s) 82
PagI TCATGA 1 cut(s) 397
PciSI GCTCTTC 1 cut(s) 384
PdmI GAANNNNTTC 1 cut(s) 926
PfeI GAWTC 8 cut(s) 255, 348, 421, 574, 889, 1099, 1502, 1515
PkrI GCNGC 1 cut(s) 1249
PleI GAGTC 4 cut(s) 342, 432, 578, 654
PpsI GAGTC 4 cut(s) 342, 432, 578, 654
PsiI TTATAA 1 cut(s) 942
Psp6I CCWGG 3 cut(s) 149, 909, 1234
PspFI CCCAGC 1 cut(s) 276
PspGI CCWGG 3 cut(s) 149, 909, 1234
PspN4I GGNNCC 1 cut(s) 742
PspPI GGNCC 4 cut(s) 704, 956, 1232, 1319
PstI CTGCAG 1 cut(s) 1339
PsuI RGATCY 1 cut(s) 732
RsaI GTAC 2 cut(s) 1108, 1397
RsaNI GTAC 2 cut(s) 1107, 1396
RseI CAYNNNNRTG 2 cut(s) 1151, 1314
SapI GCTCTTC 1 cut(s) 384
SaqAI TTAA 4 cut(s) 201, 606, 618, 1487
SatI GCNGC 1 cut(s) 1248
Sau3AI GATC 7 cut(s) 45, 61, 217, 535, 732, 1342, 1451
Sau96I GGNCC 4 cut(s) 704, 956, 1232, 1319
SchI GAGTC 4 cut(s) 343, 432, 578, 655
ScrFI CCNGG 3 cut(s) 151, 911, 1236
SduI GDGCHC 2 cut(s) 298, 1141
SfaNI GCATC 1 cut(s) 1518
SfcI CTRYAG 2 cut(s) 1242, 1335
SfuI TTCGAA 1 cut(s) 82
SinI GGWCC 4 cut(s) 704, 956, 1232, 1319
SmiMI CAYNNNNRTG 2 cut(s) 1151, 1314
SmlI CTYRAG 3 cut(s) 139, 232, 297
SmoI CTYRAG 3 cut(s) 139, 232, 297
Sse9I AATT 2 cut(s) 619, 988
SsiI CCGC 3 cut(s) 1023, 1221, 1248
SspMI CTAG 1 cut(s) 830
StyD4I CCNGG 3 cut(s) 149, 909, 1234
StyI CCWWGG 5 cut(s) 184, 326, 409, 829, 1215
TaaI ACNGT 6 cut(s) 248, 479, 627, 803, 1065, 1393
TaiI ACGT 1 cut(s) 1493
TaqI TCGA 4 cut(s) 82, 419, 899, 1037
TaqII GACCGA 1 cut(s) 645
TasI AATT 2 cut(s) 619, 988
TatI WGTACW 1 cut(s) 1395
TauI GCSGC 1 cut(s) 1250
TfiI GAWTC 8 cut(s) 255, 348, 421, 574, 889, 1099, 1502, 1515
Tru1I TTAA 4 cut(s) 201, 606, 618, 1487
Tru9I TTAA 4 cut(s) 201, 606, 618, 1487
TscAI CASTG 7 cut(s) 265, 490, 630, 648, 808, 1020, 1437
TspDTI ATGAA 4 cut(s) 89, 386, 1218, 1298
TspGWI ACGGA 1 cut(s) 725
TspRI CASTG 7 cut(s) 265, 490, 630, 648, 808, 1020, 1437
VpaK11BI GGWCC 4 cut(s) 704, 956, 1232, 1319
XcmI CCANNNNNNNNNTGG 1 cut(s) 152
XmaJI CCTAGG 1 cut(s) 829
XmnI GAANNNNTTC 1 cut(s) 926
XspI CTAG 1 cut(s) 830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.