AT4G00280

Carbohydrate-binding protein of the ER

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
N/A
Physical Location & Seq
Reverse (-)
122409 .. 122851
443 bp
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UTR
Exon/CDS
Intron
AT4G00280.1

Sequence Viewer

Length: 216 bp
ATGGCTCGTTTGATGTGGTTTGCAGTGCATGATCAATTAGAAGATTTGGAAGAAGGCCGGGAAGTATCTTCACTCGTACCATCTCTGCAACCGATGAAAACGAGCTTCCCTCAAGGCAACAGAAACTGTTACAATGTGCAGCCTCCGCAGGGAAAAGGCTTCGAGTATTTGATCATAACCCGTTTTGTTAATGAGGTTGAACCTATCACCATATAA

Protein Analysis

71

Amino Acids

8.2

Weight (kDa)

4.91

Isoelectric Point (pI)

47.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 35 - 63 9.8e-06 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 146
AfaI GTAC 1 cut(s) 78
AfiI CCNNNNNNNGG 1 cut(s) 149
AgsI TTSAA 1 cut(s) 200
AluBI AGCT 1 cut(s) 105
AluI AGCT 1 cut(s) 105
AlwNI CAGNNNCTG 1 cut(s) 126
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 139
AsuC2I CCSGG 1 cut(s) 59
AsuHPI GGTGA 1 cut(s) 199
BbvI GCAGC 1 cut(s) 151
BccI CCATC 1 cut(s) 88
BclI TGATCA 2 cut(s) 31, 171
BcnI CCSGG 1 cut(s) 59
BisI GCNGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 141
Bme1390I CCNGG 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 59
BplI GAGNNNNNCTC 2 cut(s) 94, 126
BpuEI CTTGAG 1 cut(s) 96
BpuMI CCSGG 1 cut(s) 59
Bsc4I CCNNNNNNNGG 1 cut(s) 149
BseLI CCNNNNNNNGG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 151
BsgI GTGCAG 1 cut(s) 158
BshFI GGCC 1 cut(s) 57
BsiSI CCGG 1 cut(s) 58
BslI CCNNNNNNNGG 1 cut(s) 149
BsnI GGCC 1 cut(s) 57
Bsp143I GATC 2 cut(s) 31, 171
BspACI CCGC 1 cut(s) 146
BspANI GGCC 1 cut(s) 57
BssMI GATC 2 cut(s) 31, 171
Bst4CI ACNGT 1 cut(s) 128
BstKTI GATC 2 cut(s) 34, 174
BstMBI GATC 2 cut(s) 31, 171
BstMWI GCNNNNNNNGC 1 cut(s) 145
BstSCI CCNGG 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 151
BsuRI GGCC 1 cut(s) 57
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 30
CaiI CAGNNNCTG 1 cut(s) 126
Csp6I GTAC 1 cut(s) 77
CviAII CATG 1 cut(s) 29
CviJI RGCY 5 cut(s) 5, 57, 105, 142, 159
CviKI_1 RGCY 5 cut(s) 5, 57, 105, 142, 159
CviQI GTAC 1 cut(s) 77
DpnI GATC 2 cut(s) 33, 173
DpnII GATC 2 cut(s) 31, 171
FaeI CATG 1 cut(s) 32
FaiI YATR 4 cut(s) 30, 176, 212, 214
FatI CATG 1 cut(s) 28
FbaI TGATCA 2 cut(s) 31, 171
Fnu4HI GCNGC 1 cut(s) 140
Fsp4HI GCNGC 1 cut(s) 140
GluI GCNGC 1 cut(s) 140
HaeIII GGCC 1 cut(s) 57
HapII CCGG 1 cut(s) 58
Hin1II CATG 1 cut(s) 32
HpaII CCGG 1 cut(s) 58
HphI GGTGA 1 cut(s) 199
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4V TGCA 4 cut(s) 23, 28, 88, 139
HpyF10VI GCNNNNNNNGC 1 cut(s) 145
Hsp92II CATG 1 cut(s) 32
Ksp22I TGATCA 2 cut(s) 31, 171
Kzo9I GATC 2 cut(s) 31, 171
LpnPI CCDG 2 cut(s) 71, 134
Lsp1109I GCAGC 1 cut(s) 151
MaeIII GTNAC 1 cut(s) 128
MalI GATC 2 cut(s) 33, 173
MboI GATC 2 cut(s) 31, 171
MboII GAAGA 3 cut(s) 53, 60, 62
MluCI AATT 1 cut(s) 35
MnlI CCTC 3 cut(s) 120, 153, 187
MseI TTAA 1 cut(s) 189
MspI CCGG 1 cut(s) 58
MspR9I CCNGG 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 145
NciI CCSGG 1 cut(s) 59
NdeII GATC 2 cut(s) 31, 171
NlaIII CATG 1 cut(s) 32
PkrI GCNGC 1 cut(s) 141
PstNI CAGNNNCTG 1 cut(s) 126
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 1 cut(s) 140
Sau3AI GATC 2 cut(s) 31, 171
ScrFI CCNGG 1 cut(s) 59
SetI ASST 3 cut(s) 107, 198, 205
SmlI CTYRAG 1 cut(s) 111
SmoI CTYRAG 1 cut(s) 111
Sse9I AATT 1 cut(s) 35
SsiI CCGC 1 cut(s) 146
StyD4I CCNGG 1 cut(s) 57
TaaI ACNGT 1 cut(s) 128
TaqI TCGA 1 cut(s) 162
TasI AATT 1 cut(s) 35
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 1 cut(s) 30
TseI GCWGC 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 110
TspRI CASTG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.