Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

481569 .. 484524

Gene Structure 2956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G01120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGGTAGCAACGAAGAAGGAAACCCCACTAACAACTCTGATAAGCCATCGCAAGCTGCTGCTCCTGAGCAGAGTAATGTTCATGTGTATCATCATGACTGGGCTGCTATGCAGGCATATTATGGGCCTAGAGTTGGTATACCTCAATATTACAACTCAAATTTGGCGCCTGGTCATGCTCCACCGCCTTATATGTGGGCGTCTCCATCGCCAATGATGGCTCCTTATGGAGCACCATATCCACCATTTTGCCCTCCTGGTGGAGTTTATGCTCATCCTGGTGTTCAAATGGGCTCACAACCACAAGGTCCTGTTTCTCAATCAGCATCTGGAGTTACAACCCCTTTGACCATTGATGCACCAGCTAATTCAGCTGGAAACTCAGATCATGGGTTCATGAAAAAGCTGAAAGAGTTCGATGGACTTGCAATGTCAATAAGCAATAACAAAGTTGGGAGTGCTGAACATAGCAGCAGTGAACATAGGAGTTCTCAGAGCTCCGAGAATGATGGCTCTAGCAATGGTAGTGATGGTAATACAACTGGGGGAGAACAATCTAGGAGGAAAAGAAGGCAACAAAGATCACCAAGCACTGGTGAAAGACCCTCATCTCAAAACAGTCTGCCTCTTAGAGGTGAAAATGAGAAACCCGATGTGACTATGGGGACTCCTGTTATGCCCACAGCAATGAGTTTCCAAAACTCTGCTGGCATGAACGGTGTGCCACAGCCATGGAATGAAAAAGAGGTTAAACGAGAGAAGAGAAAACAGTCAAACCGAGAATCTGCTAGGAGGTCAAGACTGAGGAAGCAGGCTGAAACAGAACAACTATCTGTCAAAGTTGACGCATTAGTAGCTGAGAACATGTCTCTGAGGTCTAAACTAGGCCAGCTAAACAATGAGTCTGAGAAACTACGGCTGGAGAACGAAGCTATATTGGATCAACTGAAAGCGCAAGCAACAGGGAAAACAGAGAACCTGATCTCTCGAGTTGATAAGAACAACTCTGTATCAGGTAGCAAAACTGTGCAGCATCAACTGTTAAATGCAAGTCCGATAACCGATCCTGTCGCGGCTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

360

Amino Acids

38.79

Weight (kDa)

8.79

Isoelectric Point (pI)

64.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFMR	PF07777	1 - 95	8e-31	G-box binding protein MFMR
MFMR_assoc	PF16596	129 - 229	1.7e-12	Disordered region downstream of MFMR
bZIP_1	PF00170	247 - 309	5.8e-21	bZIP transcription factor
bZIP_2	PF07716	249 - 301	3e-09	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	166
AccB7I	CCANNNNNTGG	1 cut(s)	593
AccI	GTMKAC	1 cut(s)	139
AccII	CGCG	1 cut(s)	1073
AciI	CCGC	2 cut(s)	185, 1073
AclWI	GGATC	2 cut(s)	948, 1058
AcsI	RAATTY	1 cut(s)	160
AcyI	GRCGYC	2 cut(s)	167, 200
AfiI	CCNNNNNNNGG	4 cut(s)	134, 260, 593, 632
AflIII	ACRYGT	1 cut(s)	864
AgsI	TTSAA	1 cut(s)	287
AjnI	CCWGG	3 cut(s)	169, 256, 277
AluBI	AGCT	9 cut(s)	56, 365, 374, 406, 498, 857, 892, 932, 1080
AluI	AGCT	9 cut(s)	56, 365, 374, 406, 498, 857, 892, 932, 1080
Alw21I	GWGCWC	2 cut(s)	235, 500
Alw26I	GTCTC	2 cut(s)	207, 873
AlwI	GGATC	2 cut(s)	948, 1058
AlwNI	CAGNNNCTG	1 cut(s)	329
Ama87I	CYCGRG	1 cut(s)	987
AoxI	GGCC	2 cut(s)	125, 886
ApeKI	GCWGC	5 cut(s)	56, 59, 104, 471, 1030
ApoI	RAATTY	1 cut(s)	160
Asp700I	GAANNNNTTC	1 cut(s)	413
AspLEI	GCGC	2 cut(s)	169, 955
AspS9I	GGNCC	2 cut(s)	125, 308
AsuHPI	GGTGA	3 cut(s)	576, 608, 647
AsuNHI	GCTAGC	1 cut(s)	1076
AvaI	CYCGRG	1 cut(s)	987
AvaII	GGWCC	1 cut(s)	308
BanI	GGYRCC	1 cut(s)	166
BanII	GRGCYC	2 cut(s)	296, 500
Bbv12I	GWGCWC	2 cut(s)	235, 500
BbvI	GCAGC	5 cut(s)	43, 46, 91, 483, 1042
BccI	CCATC	6 cut(s)	55, 211, 214, 413, 503, 524
BceAI	ACGGC	1 cut(s)	932
BcgI	CGANNNNNNTGC	2 cut(s)	407, 441
BciT130I	CCWGG	3 cut(s)	171, 258, 279
BcoDI	GTCTC	2 cut(s)	207, 873
BfaI	CTAG	6 cut(s)	129, 516, 558, 789, 884, 1077
BfoI	RGCGCY	1 cut(s)	170
BisI	GCNGC	6 cut(s)	57, 60, 105, 472, 1031, 1074
BlsI	GCNGC	6 cut(s)	58, 61, 106, 473, 1032, 1075
Bme1390I	CCNGG	3 cut(s)	171, 258, 279
Bme18I	GGWCC	1 cut(s)	308
BmeT110I	CYCGRG	1 cut(s)	987
BmgT120I	GGNCC	2 cut(s)	125, 308
BmiI	GGNNCC	2 cut(s)	168, 222
BmrFI	CCNGG	3 cut(s)	171, 258, 279
BmrI	ACTGGG	2 cut(s)	109, 552
BmsI	GCATC	3 cut(s)	335, 346, 1042
BmtI	GCTAGC	1 cut(s)	1080
BmuI	ACTGGG	2 cut(s)	109, 552
BpmI	CTGGAG	2 cut(s)	351, 941
Bpu10I	CCTNAGC	1 cut(s)	66
BsaHI	GRCGYC	2 cut(s)	167, 200
BsaJI	CCNNGG	1 cut(s)	731
Bsc4I	CCNNNNNNNGG	4 cut(s)	134, 260, 593, 632
Bse1I	ACTGG	3 cut(s)	104, 547, 598
Bse3DI	GCAATG	3 cut(s)	435, 526, 693
BseBI	CCWGG	3 cut(s)	171, 258, 279
BseDI	CCNNGG	1 cut(s)	731
BseGI	GGATG	1 cut(s)	274
BseLI	CCNNNNNNNGG	4 cut(s)	134, 260, 593, 632
BseMI	GCAATG	3 cut(s)	435, 526, 693
BseMII	CTCAG	7 cut(s)	57, 396, 506, 794, 849, 863, 897
BseNI	ACTGG	3 cut(s)	104, 547, 598
BseXI	GCAGC	5 cut(s)	43, 46, 91, 483, 1042
BsgI	GTGCAG	1 cut(s)	1049
Bsh1236I	CGCG	1 cut(s)	1073
BshFI	GGCC	2 cut(s)	127, 888
BshNI	GGYRCC	1 cut(s)	166
BsiHKAI	GWGCWC	2 cut(s)	235, 500
BsiHKCI	CYCGRG	1 cut(s)	987
BslFI	GGGAC	1 cut(s)	679
BslI	CCNNNNNNNGG	4 cut(s)	134, 260, 593, 632
BsmAI	GTCTC	2 cut(s)	207, 873
BsmBI	CGTCTC	1 cut(s)	207
BsmFI	GGGAC	1 cut(s)	679
BsnI	GGCC	2 cut(s)	127, 888
BsoBI	CYCGRG	1 cut(s)	987
Bsp1286I	GDGCHC	3 cut(s)	235, 296, 500
Bsp143I	GATC	5 cut(s)	385, 581, 940, 981, 1063
Bsp19I	CCATGG	1 cut(s)	731
BspACI	CCGC	2 cut(s)	185, 1073
BspANI	GGCC	2 cut(s)	127, 888
BspCNI	CTCAG	7 cut(s)	58, 395, 505, 795, 850, 864, 898
BspFNI	CGCG	1 cut(s)	1073
BspHI	TCATGA	2 cut(s)	94, 396
BspLI	GGNNCC	2 cut(s)	168, 222
BspOI	GCTAGC	1 cut(s)	1080
BspPI	GGATC	2 cut(s)	948, 1058
BspT107I	GGYRCC	1 cut(s)	166
BsrDI	GCAATG	3 cut(s)	435, 526, 693
BsrI	ACTGG	3 cut(s)	104, 547, 598
BssECI	CCNNGG	1 cut(s)	731
BssMI	GATC	5 cut(s)	385, 581, 940, 981, 1063
BssNAI	GTATAC	1 cut(s)	140
BssNI	GRCGYC	2 cut(s)	167, 200
BssT1I	CCWWGG	1 cut(s)	731
Bst1107I	GTATAC	1 cut(s)	140
Bst2UI	CCWGG	3 cut(s)	171, 258, 279
Bst4CI	ACNGT	5 cut(s)	620, 719, 771, 1027, 1041
Bst6I	CTCTTC	1 cut(s)	755
BstACI	GRCGYC	2 cut(s)	167, 200
BstC8I	GCNNGC	7 cut(s)	54, 114, 709, 813, 890, 957, 1078
BstDEI	CTNAG	8 cut(s)	66, 382, 492, 629, 803, 858, 872, 906
BstDSI	CCRYGG	1 cut(s)	731
BstENI	CCTNNNNNAGG	1 cut(s)	630
BstF5I	GGATG	1 cut(s)	274
BstFNI	CGCG	1 cut(s)	1073
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	2 cut(s)	169, 955
BstKTI	GATC	5 cut(s)	388, 584, 943, 984, 1066
BstMAI	GTCTC	2 cut(s)	207, 873
BstMBI	GATC	5 cut(s)	385, 581, 940, 981, 1063
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 371, 854
BstNI	CCWGG	3 cut(s)	171, 258, 279
BstNSI	RCATGY	1 cut(s)	868
BstSCI	CCNGG	3 cut(s)	169, 256, 277
BstUI	CGCG	1 cut(s)	1073
BstV1I	GCAGC	5 cut(s)	43, 46, 91, 483, 1042
BstXI	CCANNNNNNTGG	1 cut(s)	732
BstZ17I	GTATAC	1 cut(s)	140
BsuRI	GGCC	2 cut(s)	127, 888
BtgI	CCRYGG	1 cut(s)	731
BtgZI	GCGATG	2 cut(s)	33, 192
BtsCI	GGATG	1 cut(s)	274
BtsI	GCAGTG	1 cut(s)	481
BtsIMutI	CAGTG	2 cut(s)	481, 591
Cac8I	GCNNGC	7 cut(s)	54, 114, 709, 813, 890, 957, 1078
CaiI	CAGNNNCTG	1 cut(s)	329
CciI	TCATGA	2 cut(s)	94, 396
CfoI	GCGC	2 cut(s)	169, 955
Cfr13I	GGNCC	2 cut(s)	125, 308
CseI	GACGC	2 cut(s)	189, 854
CviAII	CATG	8 cut(s)	83, 95, 176, 389, 397, 712, 732, 865
DdeI	CTNAG	8 cut(s)	66, 382, 492, 629, 803, 858, 872, 906
DinI	GGCGCC	1 cut(s)	168
DpnI	GATC	5 cut(s)	387, 583, 942, 983, 1065
DpnII	GATC	5 cut(s)	385, 581, 940, 981, 1063
Eam1104I	CTCTTC	1 cut(s)	755
EarI	CTCTTC	1 cut(s)	755
Ecl136II	GAGCTC	1 cut(s)	498
Eco130I	CCWWGG	1 cut(s)	731
Eco24I	GRGCYC	2 cut(s)	296, 500
Eco47I	GGWCC	1 cut(s)	308
Eco53kI	GAGCTC	1 cut(s)	498
Eco88I	CYCGRG	1 cut(s)	987
EcoICRI	GAGCTC	1 cut(s)	498
EcoNI	CCTNNNNNAGG	1 cut(s)	630
EcoO109I	RGGNCCY	1 cut(s)	308
EcoRII	CCWGG	3 cut(s)	169, 256, 277
EcoT14I	CCWWGG	1 cut(s)	731
EcoT38I	GRGCYC	2 cut(s)	296, 500
EgeI	GGCGCC	1 cut(s)	168
EheI	GGCGCC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	731
Esp3I	CGTCTC	1 cut(s)	207
FaeI	CATG	8 cut(s)	86, 98, 179, 392, 400, 715, 735, 868
FaqI	GGGAC	1 cut(s)	679
FatI	CATG	8 cut(s)	82, 94, 175, 388, 396, 711, 731, 864
FblI	GTMKAC	1 cut(s)	139
Fnu4HI	GCNGC	6 cut(s)	57, 60, 105, 472, 1031, 1074
FokI	GGATG	1 cut(s)	261
FriOI	GRGCYC	2 cut(s)	296, 500
Fsp4HI	GCNGC	6 cut(s)	57, 60, 105, 472, 1031, 1074
FspBI	CTAG	6 cut(s)	129, 516, 558, 789, 884, 1077
GlaI	GCGC	2 cut(s)	168, 954
GluI	GCNGC	6 cut(s)	57, 60, 105, 472, 1031, 1074
GsuI	CTGGAG	2 cut(s)	351, 941
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	2 cut(s)	127, 888
HgaI	GACGC	2 cut(s)	189, 854
HhaI	GCGC	2 cut(s)	169, 955
Hin1I	GRCGYC	2 cut(s)	167, 200
Hin1II	CATG	8 cut(s)	86, 98, 179, 392, 400, 715, 735, 868
Hin6I	GCGC	2 cut(s)	167, 953
HinP1I	GCGC	2 cut(s)	167, 953
HincII	GTYRAC	1 cut(s)	844
HindII	GTYRAC	1 cut(s)	844
HinfI	GANTC	3 cut(s)	667, 782, 902
HphI	GGTGA	3 cut(s)	576, 608, 647
Hpy166II	GTNNAC	3 cut(s)	140, 479, 844
Hpy188I	TCNGA	7 cut(s)	40, 385, 495, 502, 873, 907, 1056
Hpy188III	TCNNGA	6 cut(s)	65, 95, 330, 397, 798, 987
Hpy8I	GTNNAC	3 cut(s)	140, 479, 844
HpyAV	CCTTC	2 cut(s)	11, 564
HpyCH4III	ACNGT	5 cut(s)	620, 719, 771, 1027, 1041
HpyCH4V	TGCA	5 cut(s)	112, 359, 428, 1030, 1049
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 371, 854
HpyF3I	CTNAG	8 cut(s)	66, 382, 492, 629, 803, 858, 872, 906
Hsp92I	GRCGYC	2 cut(s)	167, 200
Hsp92II	CATG	8 cut(s)	86, 98, 179, 392, 400, 715, 735, 868
HspAI	GCGC	2 cut(s)	167, 953
KasI	GGCGCC	1 cut(s)	166
Kzo9I	GATC	5 cut(s)	385, 581, 940, 981, 1063
LmnI	GCTCC	5 cut(s)	67, 184, 226, 230, 503
Lsp1109I	GCAGC	5 cut(s)	43, 46, 91, 483, 1042
LweI	GCATC	3 cut(s)	335, 346, 1042
MaeI	CTAG	6 cut(s)	129, 516, 558, 789, 884, 1077
MaeIII	GTNAC	2 cut(s)	334, 655
MalI	GATC	5 cut(s)	387, 583, 942, 983, 1065
MboI	GATC	5 cut(s)	385, 581, 940, 981, 1063
MboII	GAAGA	2 cut(s)	26, 772
MhlI	GDGCHC	3 cut(s)	235, 296, 500
MluCI	AATT	2 cut(s)	160, 367
Mly113I	GGCGCC	1 cut(s)	167
MlyI	GAGTC	2 cut(s)	661, 911
MroXI	GAANNNNTTC	1 cut(s)	413
MseI	TTAA	2 cut(s)	750, 1043
MslI	CAYNNNNRTG	3 cut(s)	279, 686, 730
MspA1I	CMGCKG	1 cut(s)	374
MspR9I	CCNGG	3 cut(s)	171, 258, 279
MvaI	CCWGG	3 cut(s)	171, 258, 279
MvnI	CGCG	1 cut(s)	1073
MwoI	GCNNNNNNNGC	3 cut(s)	113, 371, 854
NarI	GGCGCC	1 cut(s)	167
NcoI	CCATGG	1 cut(s)	731
NdeII	GATC	5 cut(s)	385, 581, 940, 981, 1063
NheI	GCTAGC	1 cut(s)	1076
NlaIII	CATG	8 cut(s)	86, 98, 179, 392, 400, 715, 735, 868
NlaIV	GGNNCC	2 cut(s)	168, 222
NmuCI	GTSAC	1 cut(s)	655
NspI	RCATGY	1 cut(s)	868
PaeR7I	CTCGAG	1 cut(s)	987
PagI	TCATGA	2 cut(s)	94, 396
PciI	ACATGT	1 cut(s)	864
PdmI	GAANNNNTTC	1 cut(s)	413
PfeI	GAWTC	1 cut(s)	782
PflMI	CCANNNNNTGG	1 cut(s)	593
PkrI	GCNGC	6 cut(s)	58, 61, 106, 473, 1032, 1075
PleI	GAGTC	2 cut(s)	661, 910
PluTI	GGCGCC	1 cut(s)	170
PpsI	GAGTC	2 cut(s)	661, 910
PpuMI	RGGWCCY	1 cut(s)	308
PscI	ACATGT	1 cut(s)	864
Psp124BI	GAGCTC	1 cut(s)	500
Psp5II	RGGWCCY	1 cut(s)	308
Psp6I	CCWGG	3 cut(s)	169, 256, 277
PspGI	CCWGG	3 cut(s)	169, 256, 277
PspN4I	GGNNCC	2 cut(s)	168, 222
PspPI	GGNCC	2 cut(s)	125, 308
PspPPI	RGGWCCY	1 cut(s)	308
PstNI	CAGNNNCTG	1 cut(s)	329
PvuII	CAGCTG	1 cut(s)	374
RseI	CAYNNNNRTG	3 cut(s)	279, 686, 730
SacI	GAGCTC	1 cut(s)	500
SaqAI	TTAA	2 cut(s)	750, 1043
SatI	GCNGC	6 cut(s)	57, 60, 105, 472, 1031, 1074
Sau3AI	GATC	5 cut(s)	385, 581, 940, 981, 1063
Sau96I	GGNCC	2 cut(s)	125, 308
SchI	GAGTC	2 cut(s)	661, 911
ScrFI	CCNGG	3 cut(s)	171, 258, 279
SduI	GDGCHC	3 cut(s)	235, 296, 500
SfaNI	GCATC	3 cut(s)	335, 346, 1042
SfoI	GGCGCC	1 cut(s)	168
Sfr274I	CTCGAG	1 cut(s)	987
SinI	GGWCC	1 cut(s)	308
SlaI	CTCGAG	1 cut(s)	987
SmiMI	CAYNNNNRTG	3 cut(s)	279, 686, 730
SmlI	CTYRAG	1 cut(s)	987
SmoI	CTYRAG	1 cut(s)	987
Sse9I	AATT	2 cut(s)	160, 367
SsiI	CCGC	2 cut(s)	185, 1073
SspDI	GGCGCC	1 cut(s)	166
SspI	AATATT	1 cut(s)	149
SspMI	CTAG	6 cut(s)	129, 516, 558, 789, 884, 1077
SstI	GAGCTC	1 cut(s)	500
StyD4I	CCNGG	3 cut(s)	169, 256, 277
StyI	CCWWGG	1 cut(s)	731
TaaI	ACNGT	5 cut(s)	620, 719, 771, 1027, 1041
TaqI	TCGA	2 cut(s)	417, 988
TasI	AATT	2 cut(s)	160, 367
TauI	GCSGC	1 cut(s)	1076
TfiI	GAWTC	1 cut(s)	782
Tru1I	TTAA	2 cut(s)	750, 1043
Tru9I	TTAA	2 cut(s)	750, 1043
TscAI	CASTG	2 cut(s)	481, 598
TseFI	GTSAC	1 cut(s)	655
TseI	GCWGC	5 cut(s)	56, 59, 104, 471, 1030
Tsp45I	GTSAC	1 cut(s)	655
TspDTI	ATGAA	5 cut(s)	71, 385, 413, 728, 753
TspRI	CASTG	2 cut(s)	481, 598
Van91I	CCANNNNNTGG	1 cut(s)	593
VpaK11BI	GGWCC	1 cut(s)	308
XagI	CCTNNNNNAGG	1 cut(s)	630
XapI	RAATTY	1 cut(s)	160
XceI	RCATGY	1 cut(s)	868
XcmI	CCANNNNNNNNNTGG	1 cut(s)	704
XhoI	CTCGAG	1 cut(s)	987
XmiI	GTMKAC	1 cut(s)	139
XmnI	GAANNNNTTC	1 cut(s)	413
XspI	CTAG	6 cut(s)	129, 516, 558, 789, 884, 1077

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.