Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1485049 .. 1490228

Gene Structure 5180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G03380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGAAGCGCATCAAGCCACCCACTGTTCCTGCTGGAGTTGTGAATATGGTACAATATTTGGTAGTTACGAACAAGGGAGATCACAAACCTTTGAATGTAGGTACTATGCTATTGATCACTGAAACAAAAGTCCCATTAGGTCGTGTGGATGGGTACTTCTTTGGATCTGTAACGAATCCTGACTATATTGTGAAAGTGGAGGATTCAGAGATGCAAATCCCTGAAGTAAGACAAGGTGGACCGTCAGGTTCATTTGGTGTAGATCTGAGCTATCCCAACCAACAACAGTTAGGATCGGAGATGGATTTCAATCCCCAAACGCAGCCCACAATGCAGTCTCAGCTGTTTAACGCTGGACCATATTCTTACCGTGAATCTAGAGAATCAAGGGCAATTGTTCATGCTCCTCGTTCCACCATTTATGAAGCCAACAAGAAACCATATTCTTCTTTTTCAAGAAACGCTAAAGAAGATGACCGCAATGATGGTGAAGCCCAAGGCACAATGACCAACGATGTCCATAGGTCAGAAGCAATTCAACCAACCTTATTACCAGGACCTAACCAAACGGTGGGGGACGACGATCAACATTGTTTGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007623 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase_Tyr

Protein Analysis

200

Amino Acids

22.18

Weight (kDa)

5.25

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	571
AciI	CCGC	1 cut(s)	478
AclWI	GGATC	2 cut(s)	172, 301
AcuI	CTGAAG	1 cut(s)	243
AfaI	GTAC	3 cut(s)	51, 103, 155
AfiI	CCNNNNNNNGG	1 cut(s)	571
AgsI	TTSAA	4 cut(s)	94, 310, 456, 539
AjnI	CCWGG	1 cut(s)	553
AluBI	AGCT	2 cut(s)	270, 343
AluI	AGCT	2 cut(s)	270, 343
Alw26I	GTCTC	1 cut(s)	342
AlwI	GGATC	2 cut(s)	172, 301
ApeKI	GCWGC	1 cut(s)	322
Asp700I	GAANNNNTTC	1 cut(s)	534
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	3 cut(s)	239, 356, 557
AsuHPI	GGTGA	1 cut(s)	500
AvaII	GGWCC	3 cut(s)	239, 356, 557
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	3 cut(s)	143, 295, 479
BciT130I	CCWGG	1 cut(s)	555
BclI	TGATCA	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	342
BfaI	CTAG	1 cut(s)	378
BglII	AGATCT	1 cut(s)	262
BisI	GCNGC	1 cut(s)	323
BlsI	GCNGC	1 cut(s)	324
Bme1390I	CCNGG	1 cut(s)	555
Bme18I	GGWCC	3 cut(s)	239, 356, 557
BmgT120I	GGNCC	3 cut(s)	239, 356, 557
BmrFI	CCNGG	1 cut(s)	555
BmsI	GCATC	2 cut(s)	18, 201
BpmI	CTGGAG	1 cut(s)	54
BsaBI	GATNNNNATC	2 cut(s)	215, 309
BsaJI	CCNNGG	1 cut(s)	496
Bsc4I	CCNNNNNNNGG	1 cut(s)	571
Bse3DI	GCAATG	1 cut(s)	487
Bse8I	GATNNNNATC	2 cut(s)	215, 309
BseBI	CCWGG	1 cut(s)	555
BseDI	CCNNGG	1 cut(s)	496
BseGI	GGATG	1 cut(s)	154
BseJI	GATNNNNATC	2 cut(s)	215, 309
BseLI	CCNNNNNNNGG	1 cut(s)	571
BseMI	GCAATG	1 cut(s)	487
BseMII	CTCAG	2 cut(s)	257, 353
BseRI	GAGGAG	1 cut(s)	396
BseXI	GCAGC	1 cut(s)	334
BslFI	GGGAC	2 cut(s)	116, 590
BslI	CCNNNNNNNGG	1 cut(s)	571
BsmAI	GTCTC	1 cut(s)	342
BsmFI	GGGAC	2 cut(s)	116, 590
Bsp143I	GATC	6 cut(s)	79, 114, 164, 262, 293, 583
BspACI	CCGC	1 cut(s)	478
BspCNI	CTCAG	2 cut(s)	258, 352
BspPI	GGATC	2 cut(s)	172, 301
BsrDI	GCAATG	1 cut(s)	487
BssECI	CCNNGG	1 cut(s)	496
BssMI	GATC	6 cut(s)	79, 114, 164, 262, 293, 583
BssT1I	CCWWGG	1 cut(s)	496
Bst2UI	CCWGG	1 cut(s)	555
Bst4CI	ACNGT	5 cut(s)	25, 243, 288, 371, 571
BstDEI	CTNAG	2 cut(s)	266, 339
BstF5I	GGATG	1 cut(s)	154
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	6 cut(s)	82, 117, 167, 265, 296, 586
BstMAI	GTCTC	1 cut(s)	342
BstMBI	GATC	6 cut(s)	79, 114, 164, 262, 293, 583
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 331, 340
BstNI	CCWGG	1 cut(s)	555
BstSCI	CCNGG	1 cut(s)	553
BstV1I	GCAGC	1 cut(s)	334
BstX2I	RGATCY	2 cut(s)	164, 262
BstYI	RGATCY	2 cut(s)	164, 262
BtsCI	GGATG	1 cut(s)	154
BtsIMutI	CAGTG	2 cut(s)	21, 117
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	3 cut(s)	239, 356, 557
Csp6I	GTAC	3 cut(s)	50, 102, 154
CviAII	CATG	1 cut(s)	401
CviJI	RGCY	6 cut(s)	16, 270, 325, 343, 428, 494
CviKI_1	RGCY	6 cut(s)	16, 270, 325, 343, 428, 494
CviQI	GTAC	3 cut(s)	50, 102, 154
DdeI	CTNAG	2 cut(s)	266, 339
DpnI	GATC	6 cut(s)	81, 116, 166, 264, 295, 585
DpnII	GATC	6 cut(s)	79, 114, 164, 262, 293, 583
Eco130I	CCWWGG	1 cut(s)	496
Eco47I	GGWCC	3 cut(s)	239, 356, 557
Eco57I	CTGAAG	1 cut(s)	243
EcoO109I	RGGNCCY	1 cut(s)	557
EcoRII	CCWGG	1 cut(s)	553
EcoT14I	CCWWGG	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	496
FaeI	CATG	1 cut(s)	404
FaiI	YATR	8 cut(s)	47, 107, 186, 361, 402, 423, 442, 522
FaqI	GGGAC	2 cut(s)	116, 590
FatI	CATG	1 cut(s)	400
FbaI	TGATCA	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	323
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	323
FspBI	CTAG	1 cut(s)	378
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	1 cut(s)	323
GsuI	CTGGAG	1 cut(s)	54
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	1 cut(s)	404
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HinfI	GANTC	4 cut(s)	175, 203, 374, 383
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	4 cut(s)	208, 267, 298, 529
Hpy188III	TCNNGA	3 cut(s)	179, 378, 456
Hpy8I	GTNNAC	1 cut(s)	239
Hpy99I	CGWCG	1 cut(s)	584
HpyCH4III	ACNGT	5 cut(s)	25, 243, 288, 371, 571
HpyCH4V	TGCA	2 cut(s)	214, 334
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 331, 340
HpyF3I	CTNAG	2 cut(s)	266, 339
Hsp92II	CATG	1 cut(s)	404
HspAI	GCGC	1 cut(s)	7
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	6 cut(s)	79, 114, 164, 262, 293, 583
LmnI	GCTCC	1 cut(s)	409
LpnPI	CCDG	8 cut(s)	18, 42, 192, 231, 234, 339, 540, 567
Lsp1109I	GCAGC	1 cut(s)	334
LweI	GCATC	2 cut(s)	18, 201
MaeI	CTAG	1 cut(s)	378
MaeIII	GTNAC	2 cut(s)	64, 169
MalI	GATC	6 cut(s)	81, 116, 166, 264, 295, 585
MboI	GATC	6 cut(s)	79, 114, 164, 262, 293, 583
MboII	GAAGA	2 cut(s)	438, 482
MfeI	CAATTG	1 cut(s)	393
MflI	RGATCY	2 cut(s)	164, 262
MluCI	AATT	2 cut(s)	393, 534
MnlI	CCTC	2 cut(s)	193, 417
MroXI	GAANNNNTTC	1 cut(s)	534
MseI	TTAA	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	343
MspR9I	CCNGG	1 cut(s)	555
MunI	CAATTG	1 cut(s)	393
MvaI	CCWGG	1 cut(s)	555
MwoI	GCNNNNNNNGC	3 cut(s)	13, 331, 340
NdeII	GATC	6 cut(s)	79, 114, 164, 262, 293, 583
NlaIII	CATG	1 cut(s)	404
PdmI	GAANNNNTTC	1 cut(s)	534
PfeI	GAWTC	4 cut(s)	175, 203, 374, 383
PflMI	CCANNNNNTGG	1 cut(s)	571
PkrI	GCNGC	1 cut(s)	324
PpuMI	RGGWCCY	1 cut(s)	557
Psp5II	RGGWCCY	1 cut(s)	557
Psp6I	CCWGG	1 cut(s)	553
PspGI	CCWGG	1 cut(s)	553
PspPI	GGNCC	3 cut(s)	239, 356, 557
PspPPI	RGGWCCY	1 cut(s)	557
PsuI	RGATCY	2 cut(s)	164, 262
PvuII	CAGCTG	1 cut(s)	343
RsaI	GTAC	3 cut(s)	51, 103, 155
RsaNI	GTAC	3 cut(s)	50, 102, 154
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	1 cut(s)	323
Sau3AI	GATC	6 cut(s)	79, 114, 164, 262, 293, 583
Sau96I	GGNCC	3 cut(s)	239, 356, 557
ScrFI	CCNGG	1 cut(s)	555
SfaNI	GCATC	2 cut(s)	18, 201
SinI	GGWCC	3 cut(s)	239, 356, 557
Sse9I	AATT	2 cut(s)	393, 534
SsiI	CCGC	1 cut(s)	478
SspI	AATATT	1 cut(s)	56
SspMI	CTAG	1 cut(s)	378
StyD4I	CCNGG	1 cut(s)	553
StyI	CCWWGG	1 cut(s)	496
TaaI	ACNGT	5 cut(s)	25, 243, 288, 371, 571
TasI	AATT	2 cut(s)	393, 534
TfiI	GAWTC	4 cut(s)	175, 203, 374, 383
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	2 cut(s)	28, 124
TseI	GCWGC	1 cut(s)	322
TspDTI	ATGAA	4 cut(s)	17, 240, 389, 438
TspRI	CASTG	2 cut(s)	28, 124
Van91I	CCANNNNNTGG	1 cut(s)	571
VpaK11BI	GGWCC	3 cut(s)	239, 356, 557
XbaI	TCTAGA	1 cut(s)	377
XmnI	GAANNNNTTC	1 cut(s)	534
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.