Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2618372 .. 2619947

Gene Structure 1576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G05100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGGACGATCACCATGTTGTGAGAAGAAGAATGGTCTCAAGAAAGGACCATGGACTCCTGAGGAGGATCAAAAGCTCATTGATTATATCAATATACATGGTTATGGAAATTGGAGAACTCTTCCCAAGAATGCTGGGTTACAAAGATGTGGTAAGAGTTGTCGTCTCCGGTGGACCAACTATCTCCGACCAGATATTAAGCGTGGAAGATTCTCTTTTGAAGAAGAAGAAACCATTATTCAACTTCACAGCATCATGGGAAACAAGTGGTCTGCGATTGCGGCTCGTTTGCCTGGAAGAACAGACAACGAGATCAAAAACTATTGGAACACTCACATCAGAAAAAGACTTCTAAAGATGGGAATCGACCCGGTTACACACACTCCACGTCTTGATCTTCTCGATATCTCCTCCATTCTCAGCTCATCTATCTACAACTCTTCGCATCATCATCATCATCATCATCAACAACATATGAACATGTCGAGGCTCATGATGAGTGATGGTAATCATCAACCATTGGTTAACCCCGAGATACTCAAACTCGCAACCTCTCTCTTTTCAAACCAAAACCACCCCAACAACACACACGAGAACAACACGGTTAACCAAACCGAAGTAAACCAATACCAAACCGGTTACAACATGCCTGGTAATGAAGAATTACAATCTTGGTTCCCTATCATGGATCAATTCACGAATTTCCAAGACCTCATGCCAATGAAGACGACGGTCCAAAATTCATTGTCATACGATGATGATTGTTCGAAGTCCAATTTTGTATTAGAACCTTATTACTCCGACTTTGCTTCAGTCTTGACCACACCTTCTTCAAGCCCGACTCCGTTAAACTCAAGTTCCTCAACTTACATCAATAGTAGCACTTGCAGCACCGAGGATGAAAAAGAGAGTTATTACAGTGATAATATCACTAATTATTCGTTTGATGTTAATGGTTTTCTCCAATTCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009825 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016049 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0040007 GO:0042221 GO:0042335 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080091 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

324

Amino Acids

37.4

Weight (kDa)

6.42

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 62	7.9e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 77	4.2e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	68 - 112	4.2e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	72 - 115	1.4e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	281
AclWI	GGATC	2 cut(s)	75, 696
AcsI	RAATTY	2 cut(s)	700, 739
AcuI	CTGAAG	1 cut(s)	795
AfiI	CCNNNNNNNGG	1 cut(s)	685
AflIII	ACRYGT	1 cut(s)	480
AgeI	ACCGGT	1 cut(s)	635
AgsI	TTSAA	4 cut(s)	221, 242, 564, 834
AjiI	CACGTC	1 cut(s)	389
AjnI	CCWGG	2 cut(s)	292, 649
AluBI	AGCT	2 cut(s)	76, 423
AluI	AGCT	2 cut(s)	76, 423
Alw26I	GTCTC	2 cut(s)	41, 170
AlwI	GGATC	2 cut(s)	75, 696
Ama87I	CYCGRG	1 cut(s)	530
ApeKI	GCWGC	1 cut(s)	888
ApoI	RAATTY	2 cut(s)	700, 739
AsiGI	ACCGGT	1 cut(s)	635
AspS9I	GGNCC	3 cut(s)	47, 174, 733
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	3
AsuII	TTCGAA	1 cut(s)	767
AvaI	CYCGRG	1 cut(s)	530
AvaII	GGWCC	3 cut(s)	47, 174, 733
AxyI	CCTNAGG	1 cut(s)	60
BauI	CACGAG	1 cut(s)	590
BbsI	GAAGAC	1 cut(s)	731
BbvI	GCAGC	1 cut(s)	900
BccI	CCATC	2 cut(s)	352, 497
BciT130I	CCWGG	2 cut(s)	294, 651
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	2 cut(s)	41, 170
BisI	GCNGC	2 cut(s)	282, 889
BlsI	GCNGC	2 cut(s)	283, 890
Bme1390I	CCNGG	3 cut(s)	294, 371, 651
Bme18I	GGWCC	3 cut(s)	47, 174, 733
BmeT110I	CYCGRG	1 cut(s)	530
BmgBI	CACGTC	1 cut(s)	389
BmgT120I	GGNCC	3 cut(s)	47, 174, 733
BmiI	GGNNCC	1 cut(s)	677
BmrFI	CCNGG	3 cut(s)	294, 371, 651
BmsI	GCATC	2 cut(s)	261, 454
BoxI	GACNNNNGTC	1 cut(s)	731
BpiI	GAAGAC	1 cut(s)	731
Bpu14I	TTCGAA	1 cut(s)	767
BpuEI	CTTGAG	2 cut(s)	23, 838
BpuMI	CCSGG	1 cut(s)	371
BsaBI	GATNNNNATC	2 cut(s)	362, 507
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	50, 894
BsaWI	WCCGGW	2 cut(s)	168, 635
BsaXI	ACNNNNNCTCC	2 cut(s)	367, 397
Bsc4I	CCNNNNNNNGG	1 cut(s)	685
Bse118I	RCCGGY	1 cut(s)	635
Bse21I	CCTNAGG	1 cut(s)	60
Bse8I	GATNNNNATC	2 cut(s)	362, 507
BseBI	CCWGG	2 cut(s)	294, 651
BseDI	CCNNGG	2 cut(s)	50, 894
BseGI	GGATG	1 cut(s)	904
BseJI	GATNNNNATC	2 cut(s)	362, 507
BseLI	CCNNNNNNNGG	1 cut(s)	685
BseMII	CTCAG	2 cut(s)	51, 433
BseRI	GAGGAG	2 cut(s)	77, 400
BseXI	GCAGC	1 cut(s)	900
BseYI	CCCAGC	1 cut(s)	134
BshTI	ACCGGT	1 cut(s)	635
BsiHKCI	CYCGRG	1 cut(s)	530
BsiSI	CCGG	3 cut(s)	169, 371, 636
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	685
BsmAI	GTCTC	2 cut(s)	41, 170
BsmBI	CGTCTC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	18
BsmI	GAATGC	1 cut(s)	136
Bso31I	GGTCTC	1 cut(s)	41
BsoBI	CYCGRG	1 cut(s)	530
Bsp119I	TTCGAA	1 cut(s)	767
Bsp143I	GATC	5 cut(s)	8, 67, 312, 394, 688
Bsp19I	CCATGG	1 cut(s)	50
BspACI	CCGC	1 cut(s)	281
BspCNI	CTCAG	2 cut(s)	52, 432
BspHI	TCATGA	1 cut(s)	492
BspLI	GGNNCC	1 cut(s)	677
BspPI	GGATC	2 cut(s)	75, 696
BspT104I	TTCGAA	1 cut(s)	767
BspTNI	GGTCTC	1 cut(s)	41
BsrFI	RCCGGY	1 cut(s)	635
BssAI	RCCGGY	1 cut(s)	635
BssECI	CCNNGG	2 cut(s)	50, 894
BssMI	GATC	5 cut(s)	8, 67, 312, 394, 688
BssSI	CACGAG	1 cut(s)	590
BssT1I	CCWWGG	1 cut(s)	50
Bst2BI	CACGAG	1 cut(s)	590
Bst2UI	CCWGG	2 cut(s)	294, 651
Bst4CI	ACNGT	3 cut(s)	604, 733, 920
Bst6I	CTCTTC	2 cut(s)	126, 445
BstBI	TTCGAA	1 cut(s)	767
BstDEI	CTNAG	2 cut(s)	60, 419
BstDSI	CCRYGG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	904
BstKTI	GATC	5 cut(s)	11, 70, 315, 397, 691
BstMAI	GTCTC	2 cut(s)	41, 170
BstMBI	GATC	5 cut(s)	8, 67, 312, 394, 688
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 888
BstNI	CCWGG	2 cut(s)	294, 651
BstNSI	RCATGY	2 cut(s)	484, 649
BstPAI	GACNNNNGTC	1 cut(s)	731
BstSCI	CCNGG	3 cut(s)	292, 369, 649
BstV1I	GCAGC	1 cut(s)	900
BstV2I	GAAGAC	1 cut(s)	731
Bsu36I	CCTNAGG	1 cut(s)	60
BtgI	CCRYGG	1 cut(s)	50
BtrI	CACGTC	1 cut(s)	389
BtsCI	GGATG	1 cut(s)	904
BtsIMutI	CAGTG	1 cut(s)	925
CciI	TCATGA	1 cut(s)	492
Cfr10I	RCCGGY	1 cut(s)	635
Cfr13I	GGNCC	3 cut(s)	47, 174, 733
CspAI	ACCGGT	1 cut(s)	635
CviAII	CATG	9 cut(s)	15, 51, 98, 256, 481, 493, 646, 685, 715
CviJI	RGCY	5 cut(s)	76, 284, 423, 490, 837
CviKI_1	RGCY	5 cut(s)	76, 284, 423, 490, 837
DdeI	CTNAG	2 cut(s)	60, 419
DpnI	GATC	5 cut(s)	10, 69, 314, 396, 690
DpnII	GATC	5 cut(s)	8, 67, 312, 394, 688
Eam1104I	CTCTTC	2 cut(s)	126, 445
EarI	CTCTTC	2 cut(s)	126, 445
Eco130I	CCWWGG	1 cut(s)	50
Eco31I	GGTCTC	1 cut(s)	41
Eco32I	GATATC	1 cut(s)	406
Eco47I	GGWCC	3 cut(s)	47, 174, 733
Eco57I	CTGAAG	1 cut(s)	795
Eco81I	CCTNAGG	1 cut(s)	60
Eco88I	CYCGRG	1 cut(s)	530
EcoRII	CCWGG	2 cut(s)	292, 649
EcoRV	GATATC	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	50
Esp3I	CGTCTC	1 cut(s)	170
FaeI	CATG	9 cut(s)	18, 54, 101, 259, 484, 496, 649, 688, 718
FalI	AAGNNNNNCTT	2 cut(s)	199, 231
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	9 cut(s)	14, 50, 97, 255, 480, 492, 645, 684, 714
FauNDI	CATATG	1 cut(s)	474
Fnu4HI	GCNGC	2 cut(s)	282, 889
FokI	GGATG	1 cut(s)	911
Fsp4HI	GCNGC	2 cut(s)	282, 889
GluI	GCNGC	2 cut(s)	282, 889
GsaI	CCCAGC	1 cut(s)	138
HapII	CCGG	3 cut(s)	169, 371, 636
Hin1II	CATG	9 cut(s)	18, 54, 101, 259, 484, 496, 649, 688, 718
HincII	GTYRAC	2 cut(s)	526, 607
HindII	GTYRAC	2 cut(s)	526, 607
HinfI	GANTC	4 cut(s)	55, 210, 363, 841
HpaI	GTTAAC	2 cut(s)	526, 607
HpaII	CCGG	3 cut(s)	169, 371, 636
HphI	GGTGA	1 cut(s)	3
Hpy166II	GTNNAC	4 cut(s)	174, 526, 607, 622
Hpy188I	TCNGA	3 cut(s)	188, 341, 802
Hpy188III	TCNNGA	7 cut(s)	40, 59, 392, 401, 493, 697, 817
Hpy8I	GTNNAC	4 cut(s)	174, 526, 607, 622
Hpy99I	CGWCG	1 cut(s)	733
HpyAV	CCTTC	1 cut(s)	837
HpyCH4III	ACNGT	3 cut(s)	604, 733, 920
HpyCH4IV	ACGT	1 cut(s)	388
HpyCH4V	TGCA	1 cut(s)	888
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 888
HpyF3I	CTNAG	2 cut(s)	60, 419
HpySE526I	ACGT	1 cut(s)	388
Hsp92II	CATG	9 cut(s)	18, 54, 101, 259, 484, 496, 649, 688, 718
KspAI	GTTAAC	2 cut(s)	526, 607
Kzo9I	GATC	5 cut(s)	8, 67, 312, 394, 688
Lsp1109I	GCAGC	1 cut(s)	900
LweI	GCATC	2 cut(s)	261, 454
MaeII	ACGT	1 cut(s)	388
MaeIII	GTNAC	3 cut(s)	138, 373, 638
MalI	GATC	5 cut(s)	10, 69, 314, 396, 690
MboI	GATC	5 cut(s)	8, 67, 312, 394, 688
MluCI	AATT	8 cut(s)	109, 662, 692, 700, 739, 775, 934, 965
MlyI	GAGTC	2 cut(s)	49, 835
MmeI	TCCRAC	2 cut(s)	211, 825
MnlI	CCTC	8 cut(s)	55, 58, 421, 480, 562, 722, 871, 889
MseI	TTAA	5 cut(s)	198, 525, 606, 848, 951
MslI	CAYNNNNRTG	2 cut(s)	102, 719
MspI	CCGG	3 cut(s)	169, 371, 636
MspR9I	CCNGG	3 cut(s)	294, 371, 651
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	2 cut(s)	294, 651
MwoI	GCNNNNNNNGC	2 cut(s)	281, 888
NciI	CCSGG	1 cut(s)	371
NcoI	CCATGG	1 cut(s)	50
NdeI	CATATG	1 cut(s)	474
NdeII	GATC	5 cut(s)	8, 67, 312, 394, 688
NlaIII	CATG	9 cut(s)	18, 54, 101, 259, 484, 496, 649, 688, 718
NlaIV	GGNNCC	1 cut(s)	677
NspI	RCATGY	2 cut(s)	484, 649
NspV	TTCGAA	1 cut(s)	767
PagI	TCATGA	1 cut(s)	492
PciI	ACATGT	1 cut(s)	480
PctI	GAATGC	1 cut(s)	136
PfeI	GAWTC	2 cut(s)	210, 363
PinAI	ACCGGT	1 cut(s)	635
PkrI	GCNGC	2 cut(s)	283, 890
PleI	GAGTC	2 cut(s)	49, 835
PpsI	GAGTC	2 cut(s)	49, 835
PscI	ACATGT	1 cut(s)	480
PshAI	GACNNNNGTC	1 cut(s)	731
Psp6I	CCWGG	2 cut(s)	292, 649
PspFI	CCCAGC	1 cut(s)	134
PspGI	CCWGG	2 cut(s)	292, 649
PspN4I	GGNNCC	1 cut(s)	677
PspPI	GGNCC	3 cut(s)	47, 174, 733
RseI	CAYNNNNRTG	2 cut(s)	102, 719
SaqAI	TTAA	5 cut(s)	198, 525, 606, 848, 951
SatI	GCNGC	2 cut(s)	282, 889
Sau3AI	GATC	5 cut(s)	8, 67, 312, 394, 688
Sau96I	GGNCC	3 cut(s)	47, 174, 733
SchI	GAGTC	2 cut(s)	49, 835
ScrFI	CCNGG	3 cut(s)	294, 371, 651
SetI	ASST	7 cut(s)	78, 391, 425, 554, 714, 793, 829
SfaNI	GCATC	2 cut(s)	261, 454
SfuI	TTCGAA	1 cut(s)	767
SinI	GGWCC	3 cut(s)	47, 174, 733
SmiMI	CAYNNNNRTG	2 cut(s)	102, 719
SmlI	CTYRAG	2 cut(s)	38, 853
SmoI	CTYRAG	2 cut(s)	38, 853
Sse9I	AATT	8 cut(s)	109, 662, 692, 700, 739, 775, 934, 965
SsiI	CCGC	1 cut(s)	281
StyD4I	CCNGG	3 cut(s)	292, 369, 649
StyI	CCWWGG	1 cut(s)	50
TaaI	ACNGT	3 cut(s)	604, 733, 920
TaiI	ACGT	1 cut(s)	391
TaqI	TCGA	4 cut(s)	366, 402, 485, 767
TasI	AATT	8 cut(s)	109, 662, 692, 700, 739, 775, 934, 965
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	2 cut(s)	210, 363
Tru1I	TTAA	5 cut(s)	198, 525, 606, 848, 951
Tru9I	TTAA	5 cut(s)	198, 525, 606, 848, 951
TscAI	CASTG	1 cut(s)	925
TseI	GCWGC	1 cut(s)	888
TspDTI	ATGAA	5 cut(s)	491, 672, 732, 737, 915
TspGWI	ACGGA	1 cut(s)	834
TspRI	CASTG	1 cut(s)	925
VpaK11BI	GGWCC	3 cut(s)	47, 174, 733
XapI	RAATTY	2 cut(s)	700, 739
XceI	RCATGY	2 cut(s)	484, 649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.