AT4G08640
TCP Family

assists the folding of proteins upon ATP hydrolysis

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
N/A
Physical Location & Seq
Forward (+)
5513313 .. 5514174
862 bp
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UTR
Exon/CDS
Intron
AT4G08640.1

Sequence Viewer

Length: 516 bp
ATGACCATGAACATTGATGATGTCCATGTTGCCAAGATATTGGGAGTAGACTCTCGCAAATCTTGCGTTGTCTGTGGTATCGTCTTTAAAAGTGACGATGTAGGTAACATTAGGCATCCTTTGAAAAATGCAAAGGTACATAACTTTGGAAAGTCAAAGGAAGCCATGCTTGAGACTTTGGTTAAAGATATTGCTTTTTCCAATGTAAAAGTTATTGTTAGTCGGTCATCAATTTGTGAAATGACACTACGTTTCTGCAAAATTTACAAGATAATGGTTCTACAGATTTCTTCTGACATTGATATTAACAGTTTATGTTCAATAGTTGGTGCAATTGATTCATCTCAGCATTTCCAACCTCATCATCTTGGATACATGGATTCTACATCATTATCAGAGATTGCCAAGAGAGCTGTAAAGAAGGCAGAGAGAGATGCAGAGAGGGCTGAGAGAGCCTCTCAGAAGAAAGCAGAGAAGTTTAAGAGTAAGCTCCAGGCTGAGAAAAAGAAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0001775 GO:0002199 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005766 GO:0005773 GO:0005775 GO:0005813 GO:0005815 GO:0005829 GO:0005832 GO:0005856 GO:0005874 GO:0005911 GO:0006457 GO:0006458 GO:0006810 GO:0006887 GO:0006955 GO:0007338 GO:0007339 GO:0008037 GO:0008150 GO:0009506 GO:0009566 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009988 GO:0010556 GO:0010557 GO:0010604 GO:0010638 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0022607 GO:0030054 GO:0030141 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031410 GO:0031647 GO:0031974 GO:0031981 GO:0031982 GO:0031983 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032879 GO:0032880 GO:0032940 GO:0032991 GO:0033043 GO:0033044 GO:0034774 GO:0035036 GO:0035578 GO:0036230 GO:0042119 GO:0042582 GO:0042623 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043299 GO:0043312 GO:0043933 GO:0044085 GO:0044183 GO:0044297 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044433 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0045055 GO:0045111 GO:0045321 GO:0045935 GO:0046903 GO:0046931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0050896 GO:0051049 GO:0051050 GO:0051052 GO:0051054 GO:0051082 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051704 GO:0055044 GO:0060205 GO:0060255 GO:0060341 GO:0061077 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070201 GO:0070202 GO:0070203 GO:0071840 GO:0080090 GO:0097708 GO:0099080 GO:0099081 GO:0099503 GO:0099512 GO:0099513 GO:0101002 GO:0101031 GO:1901998 GO:1903827 GO:1903829 GO:1904356 GO:1904358 GO:1904813 GO:1904814 GO:1904816 GO:1904851 GO:1904951 GO:2000112 GO:2000278 GO:2000573 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

171

Amino Acids

19.13

Weight (kDa)

9.36

Isoelectric Point (pI)

33.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 44 - 138 1.2e-09 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 48
AcsI RAATTY 1 cut(s) 261
AfaI GTAC 1 cut(s) 138
AgsI TTSAA 2 cut(s) 124, 321
AjnI CCWGG 1 cut(s) 492
AluBI AGCT 2 cut(s) 413, 490
AluI AGCT 2 cut(s) 413, 490
Alw26I GTCTC 1 cut(s) 167
ApoI RAATTY 1 cut(s) 261
BciT130I CCWGG 1 cut(s) 494
BciVI GTATCC 1 cut(s) 365
BcoDI GTCTC 1 cut(s) 167
BfmI CTRYAG 1 cut(s) 281
BfuI GTATCC 1 cut(s) 365
Bme1390I CCNGG 1 cut(s) 494
BmrFI CCNGG 1 cut(s) 494
BmsI GCATC 2 cut(s) 124, 424
BplI GAGNNNNNCTC 4 cut(s) 440, 472, 442, 474
BpmI CTGGAG 1 cut(s) 476
BpuEI CTTGAG 1 cut(s) 191
BseBI CCWGG 1 cut(s) 494
BseGI GGATG 1 cut(s) 115
BseMII CTCAG 4 cut(s) 359, 438, 473, 489
BsmAI GTCTC 1 cut(s) 167
BspCNI CTCAG 4 cut(s) 358, 439, 472, 490
Bst2UI CCWGG 1 cut(s) 494
Bst4CI ACNGT 1 cut(s) 311
BstAPI GCANNNNNTGC 1 cut(s) 63
BstDEI CTNAG 4 cut(s) 345, 447, 459, 498
BstF5I GGATG 1 cut(s) 115
BstMAI GTCTC 1 cut(s) 167
BstMWI GCNNNNNNNGC 4 cut(s) 63, 410, 443, 452
BstNI CCWGG 1 cut(s) 494
BstSCI CCNGG 1 cut(s) 492
BstSFI CTRYAG 1 cut(s) 281
BstXI CCANNNNNNTGG 1 cut(s) 40
BsuI GTATCC 1 cut(s) 365
BtsCI GGATG 1 cut(s) 115
Csp6I GTAC 1 cut(s) 137
CviAII CATG 4 cut(s) 7, 26, 166, 376
CviJI RGCY 6 cut(s) 164, 413, 446, 455, 490, 497
CviKI_1 RGCY 6 cut(s) 164, 413, 446, 455, 490, 497
CviQI GTAC 1 cut(s) 137
DdeI CTNAG 4 cut(s) 345, 447, 459, 498
DraI TTTAAA 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 492
FaeI CATG 4 cut(s) 10, 29, 169, 379
FaiI YATR 6 cut(s) 8, 27, 141, 167, 316, 377
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FatI CATG 4 cut(s) 6, 25, 165, 375
FblI GTMKAC 1 cut(s) 48
FokI GGATG 1 cut(s) 102
GsuI CTGGAG 1 cut(s) 476
Hin1II CATG 4 cut(s) 10, 29, 169, 379
HinfI GANTC 3 cut(s) 50, 338, 380
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 3 cut(s) 295, 397, 462
Hpy8I GTNNAC 1 cut(s) 49
HpyAV CCTTC 2 cut(s) 415, 502
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4IV ACGT 1 cut(s) 250
HpyCH4V TGCA 4 cut(s) 131, 258, 332, 437
HpyF10VI GCNNNNNNNGC 4 cut(s) 63, 410, 443, 452
HpyF3I CTNAG 4 cut(s) 345, 447, 459, 498
HpySE526I ACGT 1 cut(s) 250
Hsp92II CATG 4 cut(s) 10, 29, 169, 379
LmnI GCTCC 1 cut(s) 495
LpnPI CCDG 2 cut(s) 479, 506
LweI GCATC 2 cut(s) 124, 424
MaeII ACGT 1 cut(s) 250
MaeIII GTNAC 2 cut(s) 92, 104
MboII GAAGA 2 cut(s) 282, 475
MfeI CAATTG 1 cut(s) 333
MluCI AATT 3 cut(s) 231, 261, 333
MlyI GAGTC 1 cut(s) 44
MmeI TCCRAC 1 cut(s) 379
MnlI CCTC 3 cut(s) 369, 435, 466
MseI TTAA 4 cut(s) 87, 183, 306, 480
MspR9I CCNGG 1 cut(s) 494
MunI CAATTG 1 cut(s) 333
MvaI CCWGG 1 cut(s) 494
MwoI GCNNNNNNNGC 4 cut(s) 63, 410, 443, 452
NlaIII CATG 4 cut(s) 10, 29, 169, 379
NmuCI GTSAC 1 cut(s) 92
PfeI GAWTC 2 cut(s) 338, 380
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 492
PspGI CCWGG 1 cut(s) 492
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
SaqAI TTAA 4 cut(s) 87, 183, 306, 480
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 494
SetI ASST 6 cut(s) 106, 138, 253, 361, 415, 492
SfaNI GCATC 2 cut(s) 124, 424
SfcI CTRYAG 1 cut(s) 281
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 3 cut(s) 231, 261, 333
StyD4I CCNGG 1 cut(s) 492
TaaI ACNGT 1 cut(s) 311
TaiI ACGT 1 cut(s) 253
TaqII GACCGA 1 cut(s) 213
TasI AATT 3 cut(s) 231, 261, 333
TfiI GAWTC 2 cut(s) 338, 380
Tru1I TTAA 4 cut(s) 87, 183, 306, 480
Tru9I TTAA 4 cut(s) 87, 183, 306, 480
TseFI GTSAC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 2 cut(s) 23, 330
XapI RAATTY 1 cut(s) 261
XmiI GTMKAC 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.