AT4G13480
MYB Family

transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
N/A
Physical Location & Seq
Forward (+)
7836644 .. 7837763
1120 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G13480.1

Sequence Viewer

Length: 786 bp
ATGGTGGAAGAAGTTTGGAGAAAGGGTCCATGGACCGCCGAAGAAGACCGTCTTTTGATCGAATACGTCCGTGTTCACGGTGAAGGTCGTTGGAACTCTGTCTCTAAACTCGCAGGATTGAAAAGGAATGGCAAAAGCTGCAGACTAAGATGGGTGAATTACCTTAGACCAGACCTCAAGAGAGGACAGATCACTCCACATGAAGAAAGTATAATACTTGAGCTACACGCTAAGTGGGGAAATAGGTGGTCAACAATTGCACGTAGTTTACCAGGAAGAACAGACAATGAGATCAAGAACTATTGGAGAACCCATTTCAAGAAAAAGGCAAAGCCTACGACTAACAATGCGGAGAAGATAAAGAGTCGTCTCCTAAAAAGGCAACACTTCAAGGAACAGAGAGAAATAGAGTTGCAACAAGAACAGCAGTTGTTTCAGTTCGACCAACTCGGTATGAAAAAGATCATCTCTTTACTCGAAGAAAACAATAGCAGTAGCAGTAGCGATGGCGGTGGTGATGTGTTCTATTATCCTGATCAAATAACACATTCATCAAAACCCTTTGGCTATAACTCTAATTCATTAGAGGAGCAGTTACAAGGTAGATTTTCTCCTGTAAACATACCTGATGCTAATACTATGAACGAAGACAATGCCATATGGGACGGGTTTTGGAACATGGATGTTGTAAATGGACATGGTGGGAACTTGGGTGTTGTGGCTGCTACTGCTGCTTGTGGCCCAAGGAAGCCCTATTTCCATAACTTGGTGATTCCATTTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

261

Amino Acids

30.14

Weight (kDa)

9.15

Isoelectric Point (pI)

51.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 8 - 55 9.1e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 11 - 69 2.2e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 61 - 105 3.1e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 65 - 119 3.1e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 766
AciI CCGC 3 cut(s) 36, 350, 510
AfiI CCNNNNNNNGG 1 cut(s) 766
AgsI TTSAA 3 cut(s) 121, 319, 391
AjnI CCWGG 1 cut(s) 271
AluBI AGCT 2 cut(s) 138, 223
AluI AGCT 2 cut(s) 138, 223
Alw26I GTCTC 2 cut(s) 106, 374
AoxI GGCC 1 cut(s) 739
ApeKI GCWGC 3 cut(s) 138, 722, 731
AspS9I GGNCC 3 cut(s) 26, 33, 740
AsuHPI GGTGA 4 cut(s) 92, 166, 527, 781
AvaII GGWCC 2 cut(s) 26, 33
BbsI GAAGAC 2 cut(s) 51, 654
BbvI GCAGC 3 cut(s) 125, 709, 718
BccI CCATC 2 cut(s) 144, 500
BcgI CGANNNNNNTGC 2 cut(s) 635, 669
BciT130I CCWGG 1 cut(s) 273
BclI TGATCA 1 cut(s) 535
BcoDI GTCTC 2 cut(s) 106, 374
BfmI CTRYAG 1 cut(s) 139
BisI GCNGC 3 cut(s) 139, 723, 732
BlsI GCNGC 3 cut(s) 140, 724, 733
Bme1390I CCNGG 1 cut(s) 273
Bme18I GGWCC 2 cut(s) 26, 33
BmgT120I GGNCC 3 cut(s) 26, 33, 740
BmiI GGNNCC 1 cut(s) 27
BmrFI CCNGG 1 cut(s) 273
BmsI GCATC 1 cut(s) 619
BpiI GAAGAC 2 cut(s) 51, 654
BpuEI CTTGAG 2 cut(s) 161, 239
BsaAI YACGTR 1 cut(s) 263
BsaJI CCNNGG 2 cut(s) 29, 743
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bsc4I CCNNNNNNNGG 1 cut(s) 766
BseBI CCWGG 1 cut(s) 273
BseDI CCNNGG 2 cut(s) 29, 743
BseGI GGATG 1 cut(s) 688
BseLI CCNNNNNNNGG 1 cut(s) 766
BseRI GAGGAG 1 cut(s) 602
BseXI GCAGC 3 cut(s) 125, 709, 718
BshFI GGCC 1 cut(s) 741
BslFI GGGAC 1 cut(s) 677
BslI CCNNNNNNNGG 1 cut(s) 766
BsmAI GTCTC 2 cut(s) 106, 374
BsmBI CGTCTC 1 cut(s) 374
BsmFI GGGAC 1 cut(s) 677
BsnI GGCC 1 cut(s) 741
Bsp143I GATC 5 cut(s) 57, 189, 291, 462, 535
Bsp19I CCATGG 1 cut(s) 29
BspACI CCGC 3 cut(s) 36, 350, 510
BspANI GGCC 1 cut(s) 741
BspLI GGNNCC 1 cut(s) 27
BspMAI CTGCAG 1 cut(s) 143
BssECI CCNNGG 2 cut(s) 29, 743
BssMI GATC 5 cut(s) 57, 189, 291, 462, 535
BssT1I CCWWGG 2 cut(s) 29, 743
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 2 cut(s) 50, 80
BstAPI GCANNNNNTGC 1 cut(s) 138
BstBAI YACGTR 1 cut(s) 263
BstDEI CTNAG 3 cut(s) 146, 164, 231
BstDSI CCRYGG 1 cut(s) 29
BstF5I GGATG 1 cut(s) 688
BstKTI GATC 5 cut(s) 60, 192, 294, 465, 538
BstMAI GTCTC 2 cut(s) 106, 374
BstMBI GATC 5 cut(s) 57, 189, 291, 462, 535
BstMWI GCNNNNNNNGC 3 cut(s) 138, 728, 731
BstNI CCWGG 1 cut(s) 273
BstSCI CCNGG 1 cut(s) 271
BstSFI CTRYAG 1 cut(s) 139
BstV1I GCAGC 3 cut(s) 125, 709, 718
BstV2I GAAGAC 2 cut(s) 51, 654
BsuRI GGCC 1 cut(s) 741
BtgI CCRYGG 1 cut(s) 29
BtgZI GCGATG 1 cut(s) 519
BtsCI GGATG 1 cut(s) 688
Cfr13I GGNCC 3 cut(s) 26, 33, 740
CviAII CATG 4 cut(s) 30, 200, 679, 698
CviJI RGCY 7 cut(s) 138, 223, 334, 567, 722, 741, 751
CviKI_1 RGCY 7 cut(s) 138, 223, 334, 567, 722, 741, 751
DdeI CTNAG 3 cut(s) 146, 164, 231
DpnI GATC 5 cut(s) 59, 191, 293, 464, 537
DpnII GATC 5 cut(s) 57, 189, 291, 462, 535
Eco130I CCWWGG 2 cut(s) 29, 743
Eco47I GGWCC 2 cut(s) 26, 33
EcoRII CCWGG 1 cut(s) 271
EcoT14I CCWWGG 2 cut(s) 29, 743
ErhI CCWWGG 2 cut(s) 29, 743
Esp3I CGTCTC 1 cut(s) 374
FaeI CATG 4 cut(s) 33, 203, 682, 701
FalI AAGNNNNNCTT 2 cut(s) 36, 68
FaqI GGGAC 1 cut(s) 677
FatI CATG 4 cut(s) 29, 199, 678, 697
FauNDI CATATG 1 cut(s) 659
FbaI TGATCA 1 cut(s) 535
Fnu4HI GCNGC 3 cut(s) 139, 723, 732
FokI GGATG 1 cut(s) 695
Fsp4HI GCNGC 3 cut(s) 139, 723, 732
GluI GCNGC 3 cut(s) 139, 723, 732
HaeIII GGCC 1 cut(s) 741
Hin1II CATG 4 cut(s) 33, 203, 682, 701
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HinfI GANTC 2 cut(s) 364, 772
HphI GGTGA 4 cut(s) 92, 166, 527, 781
Hpy166II GTNNAC 4 cut(s) 76, 252, 269, 619
Hpy188III TCNNGA 4 cut(s) 178, 295, 319, 533
Hpy8I GTNNAC 4 cut(s) 76, 252, 269, 619
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 2 cut(s) 50, 80
HpyCH4IV ACGT 2 cut(s) 66, 262
HpyCH4V TGCA 3 cut(s) 141, 260, 415
HpyF10VI GCNNNNNNNGC 3 cut(s) 138, 728, 731
HpyF3I CTNAG 3 cut(s) 146, 164, 231
HpySE526I ACGT 2 cut(s) 66, 262
Hsp92II CATG 4 cut(s) 33, 203, 682, 701
Ksp22I TGATCA 1 cut(s) 535
Kzo9I GATC 5 cut(s) 57, 189, 291, 462, 535
LmnI GCTCC 1 cut(s) 589
LpnPI CCDG 7 cut(s) 99, 183, 258, 285, 546, 627, 639
Lsp1109I GCAGC 3 cut(s) 125, 709, 718
LweI GCATC 1 cut(s) 619
MaeII ACGT 2 cut(s) 66, 262
MaeIII GTNAC 1 cut(s) 594
MalI GATC 5 cut(s) 59, 191, 293, 464, 537
MboI GATC 5 cut(s) 57, 189, 291, 462, 535
MboII GAAGA 8 cut(s) 20, 53, 56, 215, 288, 367, 491, 659
MfeI CAATTG 1 cut(s) 255
MluCI AATT 3 cut(s) 157, 255, 577
MlyI GAGTC 1 cut(s) 373
MmeI TCCRAC 1 cut(s) 71
MnlI CCTC 3 cut(s) 176, 185, 580
MseI TTAA 1 cut(s) 784
MspR9I CCNGG 1 cut(s) 273
MunI CAATTG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 273
MwoI GCNNNNNNNGC 3 cut(s) 138, 728, 731
NcoI CCATGG 1 cut(s) 29
NdeI CATATG 1 cut(s) 659
NdeII GATC 5 cut(s) 57, 189, 291, 462, 535
NlaIII CATG 4 cut(s) 33, 203, 682, 701
NlaIV GGNNCC 1 cut(s) 27
PfeI GAWTC 1 cut(s) 772
PflMI CCANNNNNTGG 1 cut(s) 766
PkrI GCNGC 3 cut(s) 140, 724, 733
PleI GAGTC 1 cut(s) 372
PpsI GAGTC 1 cut(s) 372
Ppu21I YACGTR 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspN4I GGNNCC 1 cut(s) 27
PspPI GGNCC 3 cut(s) 26, 33, 740
PstI CTGCAG 1 cut(s) 143
SaqAI TTAA 1 cut(s) 784
SatI GCNGC 3 cut(s) 139, 723, 732
Sau3AI GATC 5 cut(s) 57, 189, 291, 462, 535
Sau96I GGNCC 3 cut(s) 26, 33, 740
SchI GAGTC 1 cut(s) 373
ScrFI CCNGG 1 cut(s) 273
SfaNI GCATC 1 cut(s) 619
SfcI CTRYAG 1 cut(s) 139
SinI GGWCC 2 cut(s) 26, 33
SmlI CTYRAG 2 cut(s) 176, 218
SmoI CTYRAG 2 cut(s) 176, 218
Sse9I AATT 3 cut(s) 157, 255, 577
SsiI CCGC 3 cut(s) 36, 350, 510
StyD4I CCNGG 1 cut(s) 271
StyI CCWWGG 2 cut(s) 29, 743
TaaI ACNGT 2 cut(s) 50, 80
TaiI ACGT 2 cut(s) 69, 265
TaqI TCGA 3 cut(s) 60, 441, 477
TasI AATT 3 cut(s) 157, 255, 577
TfiI GAWTC 1 cut(s) 772
Tru1I TTAA 1 cut(s) 784
Tru9I TTAA 1 cut(s) 784
TseI GCWGC 3 cut(s) 138, 722, 731
TspDTI ATGAA 5 cut(s) 216, 470, 540, 570, 656
TspGWI ACGGA 1 cut(s) 59
Van91I CCANNNNNTGG 1 cut(s) 766
VpaK11BI GGWCC 2 cut(s) 26, 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.