AT4G17060
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
N/A
Physical Location & Seq
Reverse (-)
9593381 .. 9595350
1970 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17060.1

Sequence Viewer

Length: 933 bp
ATGGGATTCGCTCCGGTGACTCCGGCAGCCGTAGAAACTTACGATCCCGATGTGGATCATGATGATGAGAGTAACGGTTTGGATGGATTTAGGGTTAGATCGAAGAGGTCTGGGAAGTTTAGCGGTGGTTACTCTGATTCACCTCGAGAAGTAGGAGATGGATATGGGGTTAGATCTAGGGCAAGGAGTAACATGAAAATGTATGGTGGTTTCAAGTCTGAGTTTGATTCAGATCACGATTCAGGAAGTGGATTTGGATTGAAAAGGAAATACAATGGGAATCCAAAGGTTAGTGCTGATTTCGATGCTGATTCTGATGATGAGATTGTGTTAGTCCCCAAGGCAACTAGGCTTAGGACTCATGGCAAGCCTTCCTCTGGTGATTTTAGCCATGGCAGTGGTGGTGGGTTTCCGTTGAAGTCGTTTGGTGATCGGAATTTTGCTTCTCATGGGTTTAAACCTAAGAATTTCAGTAAGCCTGAACCCAATTTCTCTCAGGATCTGGATTATGATGATGAGTTTGATGATGATAGAGCAGAGAGGGAAGGATTCAACCCGAGGATTCAAAGTTCTAGGAGCTCTTCGCGGGTGAATGGCTACAGCAGGAAGGATGGGAGCTATCCTCGAAACACTGGTGCTTCCAATGGCTATGGATCGTCTTCTAGGTTCAAGCATGAGCAAATGAATGCAGCAGCAGAAGTTGAGTCTGACCCGATCGATGAAGTTGTTTCTTCTGTTAAGATGTTGACAGAAATGTTTGTGAGGGTGGAGAATTCGAAGATGGAGATGATGAGAGAGATGGAGAAGTCGAGAATGGAGATGGAGCTGAAGCATTGCCAGATGATGCTTGAGTCACAGCAGCAGATCATAGGCGCGTTTGCTGAAGCGTTGAGCGAGAAAAAGAGCACAAATGCAAGGAGGCCGGTTTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

310

Amino Acids

34.43

Weight (kDa)

5.75

Isoelectric Point (pI)

41.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 586, 875
AciI CCGC 2 cut(s) 123, 586
AclWI GGATC 4 cut(s) 38, 63, 507, 661
AcsI RAATTY 3 cut(s) 436, 466, 772
AcuI CTGAAG 2 cut(s) 848, 903
AfiI CCNNNNNNNGG 1 cut(s) 377
AgsI TTSAA 6 cut(s) 214, 262, 418, 553, 566, 670
AloI GAACNNNNNNTCC 2 cut(s) 553, 585
AluBI AGCT 3 cut(s) 579, 618, 826
AluI AGCT 3 cut(s) 579, 618, 826
Alw21I GWGCWC 2 cut(s) 581, 908
AlwI GGATC 4 cut(s) 38, 63, 507, 661
AlwNI CAGNNNCTG 1 cut(s) 502
Ama87I CYCGRG 2 cut(s) 144, 556
AoxI GGCC 1 cut(s) 920
ApeKI GCWGC 4 cut(s) 26, 689, 692, 859
ApoI RAATTY 3 cut(s) 436, 466, 772
AspLEI GCGC 1 cut(s) 875
AsuHPI GGTGA 5 cut(s) 28, 132, 392, 440, 601
AsuII TTCGAA 1 cut(s) 776
AvaI CYCGRG 2 cut(s) 144, 556
BanII GRGCYC 1 cut(s) 581
BbsI GAAGAC 1 cut(s) 651
Bbv12I GWGCWC 2 cut(s) 581, 908
BbvI GCAGC 4 cut(s) 38, 701, 704, 871
BccI CCATC 6 cut(s) 77, 152, 605, 775, 793, 814
BceAI ACGGC 1 cut(s) 14
BfaI CTAG 4 cut(s) 177, 348, 573, 663
BfmI CTRYAG 1 cut(s) 598
BglII AGATCT 1 cut(s) 173
BisI GCNGC 4 cut(s) 27, 690, 693, 860
BlsI GCNGC 4 cut(s) 28, 691, 694, 861
BmeT110I CYCGRG 2 cut(s) 144, 556
BmsI GCATC 2 cut(s) 295, 834
BpiI GAAGAC 1 cut(s) 651
BplI GAGNNNNNCTC 2 cut(s) 607, 639
Bpu10I CCTNAGC 1 cut(s) 353
Bpu14I TTCGAA 1 cut(s) 776
BpuEI CTTGAG 1 cut(s) 869
Bsa29I ATCGAT 1 cut(s) 717
BsaBI GATNNNNATC 2 cut(s) 54, 231
BsaJI CCNNGG 3 cut(s) 339, 391, 557
BsaWI WCCGGW 1 cut(s) 13
Bsc4I CCNNNNNNNGG 1 cut(s) 377
Bse118I RCCGGY 1 cut(s) 922
Bse1I ACTGG 1 cut(s) 637
Bse3DI GCAATG 1 cut(s) 832
Bse8I GATNNNNATC 2 cut(s) 54, 231
BseCI ATCGAT 1 cut(s) 717
BseDI CCNNGG 3 cut(s) 339, 391, 557
BseGI GGATG 2 cut(s) 88, 616
BseJI GATNNNNATC 2 cut(s) 54, 231
BseLI CCNNNNNNNGG 1 cut(s) 377
BseMI GCAATG 1 cut(s) 832
BseMII CTCAG 2 cut(s) 210, 509
BseNI ACTGG 1 cut(s) 637
BseXI GCAGC 4 cut(s) 38, 701, 704, 871
Bsh1236I CGCG 2 cut(s) 586, 875
Bsh1285I CGRYCG 1 cut(s) 717
BshFI GGCC 1 cut(s) 922
BshVI ATCGAT 1 cut(s) 717
BsiEI CGRYCG 1 cut(s) 717
BsiHKAI GWGCWC 2 cut(s) 581, 908
BsiHKCI CYCGRG 2 cut(s) 144, 556
BsiSI CCGG 3 cut(s) 14, 23, 923
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 1 cut(s) 377
BsmFI GGGAC 1 cut(s) 320
BsmI GAATGC 1 cut(s) 691
BsnI GGCC 1 cut(s) 922
BsoBI CYCGRG 2 cut(s) 144, 556
Bsp119I TTCGAA 1 cut(s) 776
Bsp1286I GDGCHC 2 cut(s) 581, 908
Bsp19I CCATGG 1 cut(s) 391
BspACI CCGC 2 cut(s) 123, 586
BspANI GGCC 1 cut(s) 922
BspCNI CTCAG 2 cut(s) 211, 508
BspDI ATCGAT 1 cut(s) 717
BspFNI CGCG 2 cut(s) 586, 875
BspHI TCATGA 1 cut(s) 58
BspPI GGATC 4 cut(s) 38, 63, 507, 661
BspQI GCTCTTC 1 cut(s) 586
BspT104I TTCGAA 1 cut(s) 776
BsrDI GCAATG 1 cut(s) 832
BsrFI RCCGGY 1 cut(s) 922
BsrI ACTGG 1 cut(s) 637
BssAI RCCGGY 1 cut(s) 922
BssECI CCNNGG 3 cut(s) 339, 391, 557
BssT1I CCWWGG 2 cut(s) 339, 391
Bst4CI ACNGT 1 cut(s) 77
Bst6I CTCTTC 2 cut(s) 98, 586
BstBI TTCGAA 1 cut(s) 776
BstC8I GCNNGC 1 cut(s) 368
BstDEI CTNAG 4 cut(s) 219, 353, 462, 495
BstDSI CCRYGG 1 cut(s) 391
BstF5I GGATG 2 cut(s) 88, 616
BstFNI CGCG 2 cut(s) 586, 875
BstHHI GCGC 1 cut(s) 875
BstMCI CGRYCG 1 cut(s) 717
BstSFI CTRYAG 1 cut(s) 598
BstUI CGCG 2 cut(s) 586, 875
BstV1I GCAGC 4 cut(s) 38, 701, 704, 871
BstV2I GAAGAC 1 cut(s) 651
BstX2I RGATCY 2 cut(s) 173, 499
BstXI CCANNNNNNTGG 1 cut(s) 398
BstYI RGATCY 2 cut(s) 173, 499
Bsu15I ATCGAT 1 cut(s) 717
BsuRI GGCC 1 cut(s) 922
BsuTUI ATCGAT 1 cut(s) 717
BtgI CCRYGG 1 cut(s) 391
BtsCI GGATG 2 cut(s) 88, 616
BtsI GCAGTG 1 cut(s) 403
BtsIMutI CAGTG 2 cut(s) 403, 630
Cac8I GCNNGC 1 cut(s) 368
CaiI CAGNNNCTG 1 cut(s) 502
CciI TCATGA 1 cut(s) 58
CfoI GCGC 1 cut(s) 875
Cfr10I RCCGGY 1 cut(s) 922
ClaI ATCGAT 1 cut(s) 717
CviAII CATG 6 cut(s) 59, 193, 362, 392, 449, 674
DdeI CTNAG 4 cut(s) 219, 353, 462, 495
DraI TTTAAA 1 cut(s) 457
Eam1104I CTCTTC 2 cut(s) 98, 586
EarI CTCTTC 2 cut(s) 98, 586
Ecl136II GAGCTC 1 cut(s) 579
Eco130I CCWWGG 2 cut(s) 339, 391
Eco24I GRGCYC 1 cut(s) 581
Eco53kI GAGCTC 1 cut(s) 579
Eco57I CTGAAG 2 cut(s) 848, 903
Eco88I CYCGRG 2 cut(s) 144, 556
EcoICRI GAGCTC 1 cut(s) 579
EcoRI GAATTC 1 cut(s) 772
EcoT14I CCWWGG 2 cut(s) 339, 391
EcoT38I GRGCYC 1 cut(s) 581
ErhI CCWWGG 2 cut(s) 339, 391
FaeI CATG 6 cut(s) 62, 196, 365, 395, 452, 677
FaqI GGGAC 1 cut(s) 320
FatI CATG 6 cut(s) 58, 192, 361, 391, 448, 673
FauI CCCGC 1 cut(s) 579
Fnu4HI GCNGC 4 cut(s) 27, 690, 693, 860
FokI GGATG 2 cut(s) 95, 623
FriOI GRGCYC 1 cut(s) 581
Fsp4HI GCNGC 4 cut(s) 27, 690, 693, 860
FspBI CTAG 4 cut(s) 177, 348, 573, 663
GlaI GCGC 1 cut(s) 874
GluI GCNGC 4 cut(s) 27, 690, 693, 860
HaeIII GGCC 1 cut(s) 922
HapII CCGG 3 cut(s) 14, 23, 923
HhaI GCGC 1 cut(s) 875
Hin1II CATG 6 cut(s) 62, 196, 365, 395, 452, 677
Hin6I GCGC 1 cut(s) 873
HinP1I GCGC 1 cut(s) 873
HincII GTYRAC 1 cut(s) 747
HindII GTYRAC 1 cut(s) 747
HpaII CCGG 3 cut(s) 14, 23, 923
HphI GGTGA 5 cut(s) 28, 132, 392, 440, 601
Hpy166II GTNNAC 1 cut(s) 747
Hpy188I TCNGA 6 cut(s) 136, 220, 232, 316, 435, 709
Hpy188III TCNNGA 8 cut(s) 47, 59, 146, 236, 243, 497, 503, 810
Hpy8I GTNNAC 1 cut(s) 747
HpyAV CCTTC 3 cut(s) 381, 539, 601
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4V TGCA 2 cut(s) 689, 914
HpyF3I CTNAG 4 cut(s) 219, 353, 462, 495
Hsp92II CATG 6 cut(s) 62, 196, 365, 395, 452, 677
HspAI GCGC 1 cut(s) 873
LguI GCTCTTC 1 cut(s) 586
LmnI GCTCC 4 cut(s) 16, 576, 615, 823
Lsp1109I GCAGC 4 cut(s) 38, 701, 704, 871
LweI GCATC 2 cut(s) 295, 834
MaeI CTAG 4 cut(s) 177, 348, 573, 663
MaeIII GTNAC 5 cut(s) 16, 71, 128, 188, 852
MboII GAAGA 5 cut(s) 115, 573, 651, 723, 790
MflI RGATCY 2 cut(s) 173, 499
MhlI GDGCHC 2 cut(s) 581, 908
MluCI AATT 4 cut(s) 436, 466, 487, 772
MlyI GAGTC 4 cut(s) 13, 352, 713, 860
MnlI CCTC 8 cut(s) 99, 153, 385, 534, 552, 633, 756, 912
MseI TTAA 2 cut(s) 456, 738
MslI CAYNNNNRTG 3 cut(s) 63, 197, 396
MspI CCGG 3 cut(s) 14, 23, 923
MssI GTTTAAAC 1 cut(s) 457
Mva1269I GAATGC 1 cut(s) 691
MvnI CGCG 2 cut(s) 586, 875
NcoI CCATGG 1 cut(s) 391
NlaIII CATG 6 cut(s) 62, 196, 365, 395, 452, 677
NmuCI GTSAC 2 cut(s) 16, 852
NspV TTCGAA 1 cut(s) 776
PaeR7I CTCGAG 1 cut(s) 144
PagI TCATGA 1 cut(s) 58
PciSI GCTCTTC 1 cut(s) 586
PctI GAATGC 1 cut(s) 691
PfeI GAWTC 8 cut(s) 6, 137, 227, 239, 280, 311, 549, 562
PkrI GCNGC 4 cut(s) 28, 691, 694, 861
Ple19I CGATCG 1 cut(s) 717
PleI GAGTC 4 cut(s) 13, 352, 712, 859
PmeI GTTTAAAC 1 cut(s) 457
PpsI GAGTC 4 cut(s) 13, 352, 712, 859
Psp124BI GAGCTC 1 cut(s) 581
PstNI CAGNNNCTG 1 cut(s) 502
PsuI RGATCY 2 cut(s) 173, 499
PvuI CGATCG 1 cut(s) 717
RseI CAYNNNNRTG 3 cut(s) 63, 197, 396
SacI GAGCTC 1 cut(s) 581
SapI GCTCTTC 1 cut(s) 586
SaqAI TTAA 2 cut(s) 456, 738
SatI GCNGC 4 cut(s) 27, 690, 693, 860
SchI GAGTC 4 cut(s) 13, 352, 713, 860
SduI GDGCHC 2 cut(s) 581, 908
SetI ASST 8 cut(s) 110, 145, 291, 463, 581, 620, 668, 828
SfaNI GCATC 2 cut(s) 295, 834
SfcI CTRYAG 1 cut(s) 598
Sfr274I CTCGAG 1 cut(s) 144
SfuI TTCGAA 1 cut(s) 776
SlaI CTCGAG 1 cut(s) 144
SmiMI CAYNNNNRTG 3 cut(s) 63, 197, 396
SmlI CTYRAG 2 cut(s) 144, 848
SmoI CTYRAG 2 cut(s) 144, 848
Sse9I AATT 4 cut(s) 436, 466, 487, 772
SsiI CCGC 2 cut(s) 123, 586
SspMI CTAG 4 cut(s) 177, 348, 573, 663
SstI GAGCTC 1 cut(s) 581
StyI CCWWGG 2 cut(s) 339, 391
TaaI ACNGT 1 cut(s) 77
TaqI TCGA 7 cut(s) 101, 145, 303, 625, 717, 776, 809
TasI AATT 4 cut(s) 436, 466, 487, 772
TfiI GAWTC 8 cut(s) 6, 137, 227, 239, 280, 311, 549, 562
Tru1I TTAA 2 cut(s) 456, 738
Tru9I TTAA 2 cut(s) 456, 738
TscAI CASTG 2 cut(s) 403, 637
TseFI GTSAC 2 cut(s) 16, 852
TseI GCWGC 4 cut(s) 26, 689, 692, 859
Tsp45I GTSAC 2 cut(s) 16, 852
TspDTI ATGAA 3 cut(s) 209, 698, 735
TspGWI ACGGA 1 cut(s) 402
TspRI CASTG 2 cut(s) 403, 637
XapI RAATTY 3 cut(s) 436, 466, 772
XcmI CCANNNNNNNNNTGG 1 cut(s) 398
XhoI CTCGAG 1 cut(s) 144
XspI CTAG 4 cut(s) 177, 348, 573, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.