Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

9831077 .. 9833138

Gene Structure 2062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G17660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGAATTGTCTGTTCTTGTTCATGTCCAAGAAACCAAAATCCAGAGGAAATATGGAGAAAGAGAAAAAAAACATAAGAGGAAGAGAGTTCTTGCAAAAGTCAGCTCCAGAATTAACGACGAGAAAGACAACTTTGTCGTTCAATCTCCCAACACCAAGATCTCTGCCATCTCCAACGAGTATCAAAGACTTGTACACAGACAGAGAACAAAATCAAAATCAAAACCTGAGGGTTTTTTCTTTCAAGGAACTGAGTGACGCCACTTGTGAGTTTAGCAGGAAGCTAAAGATCGGAGAAGGTGGCTTTGGTAGTGTCTATAAAGCCACCATTAACAATCCCACCGTAGGAGATTCTCATTCTTCTCCACTTACCGTAGCCGTTAAGAAACTCAATAGACAAAGTCTACAGGGTCACAAGCAATGGCTAGCAGAGGTTCACTTTTTGGGAGTGGTGAATCACCCTAACGTTGTGAGGCTCTTAGGGTATTGCTCAGAGGACAGAGAGAGACTTTTGGTTTACGAGTTGATGTCTAATCGCAGCTTGGAGGATCATCTCTTCACTCTAAGAACCTTAACGTTGTCGTGGAAACAAAGGCTCGAGATCATGCTTGGTGCAGCTCAAGGATTGGCTTATTTGCACGAAATCCAGGTAATATACAGAGACTTCAAATCATCAAATGTGCTATTAAATGAAGAATTCCATCCGAAATTATCCGATTTTGGTCTCGCTAGAGAAGGTCCCGAAGGAGACAATACTCACGTTACAACCGCAAGAGTTGGAACAGACGGCTATGCCGCTCCCGAGTATGTAATAACCGGTCACCTCAAGACACATTGCGATGTATATAGCTTTGGAGTTGTTTTGTACGAAATTATCACTGGTCGTCGCACATTGGAACGAATGAAACCTTTAGCTGAACAAAAGCTTCTAGAATGGGTCAAAAAATATCCTATTAATAGCAAAAGATTCAAAATGATCGTTGACTCCAAGCTATGCAATAAGTATCCAATTGCTATGGTCAGGAGAGTGGCTAAATTGGCTGATCATTGTGTGAACAAGATCGATAAAGAAAGACCTACCATGGCCTTTGTCGTCGAAAGTCTTACGAATATCATTGAGGAATCAAATTCTGAAGATATGGGAAGTTCTGTTGGCATTAGAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

388

Amino Acids

44.22

Weight (kDa)

9.35

Isoelectric Point (pI)

37.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	92 - 365	1.6e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	95 - 368	2.6e-48	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	133
AccBSI	CCGCTC	1 cut(s)	797
AccI	GTMKAC	1 cut(s)	403
AciI	CCGC	2 cut(s)	768, 795
AclI	AACGTT	2 cut(s)	465, 575
AclWI	GGATC	1 cut(s)	555
AcsI	RAATTY	2 cut(s)	695, 1126
AcuI	CTGAAG	1 cut(s)	1152
AcyI	GRCGYC	1 cut(s)	258
AfaI	GTAC	2 cut(s)	194, 866
AfiI	CCNNNNNNNGG	1 cut(s)	344
AgeI	ACCGGT	1 cut(s)	815
AgsI	TTSAA	4 cut(s)	142, 244, 667, 970
AjnI	CCWGG	1 cut(s)	645
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AluBI	AGCT	8 cut(s)	104, 283, 540, 617, 849, 914, 925, 991
AluI	AGCT	8 cut(s)	104, 283, 540, 617, 849, 914, 925, 991
Alw26I	GTCTC	4 cut(s)	499, 654, 728, 741
AlwI	GGATC	1 cut(s)	555
Ama87I	CYCGRG	2 cut(s)	596, 800
AoxI	GGCC	1 cut(s)	1083
ApeKI	GCWGC	2 cut(s)	537, 614
ApoI	RAATTY	2 cut(s)	695, 1126
AseI	ATTAAT	1 cut(s)	954
AsiGI	ACCGGT	1 cut(s)	815
AspS9I	GGNCC	1 cut(s)	737
AsuHPI	GGTGA	3 cut(s)	449, 463, 812
AsuNHI	GCTAGC	1 cut(s)	424
AvaI	CYCGRG	2 cut(s)	596, 800
AvaII	GGWCC	1 cut(s)	737
AxyI	CCTNAGG	1 cut(s)	227
BbvI	GCAGC	2 cut(s)	549, 626
BccI	CCATC	2 cut(s)	175, 708
BceAI	ACGGC	2 cut(s)	362, 802
BciT130I	CCWGG	1 cut(s)	647
BciVI	GTATCC	1 cut(s)	1014
BclI	TGATCA	1 cut(s)	1042
BcoDI	GTCTC	4 cut(s)	499, 654, 728, 741
BfaI	CTAG	4 cut(s)	425, 729, 929, 1165
BfmI	CTRYAG	1 cut(s)	404
BfuI	GTATCC	1 cut(s)	1014
BglII	AGATCT	1 cut(s)	158
BisI	GCNGC	3 cut(s)	538, 615, 795
BlsI	GCNGC	3 cut(s)	539, 616, 796
Bme1390I	CCNGG	1 cut(s)	647
Bme18I	GGWCC	1 cut(s)	737
BmeT110I	CYCGRG	2 cut(s)	596, 800
BmgT120I	GGNCC	1 cut(s)	737
BmiI	GGNNCC	1 cut(s)	739
BmrFI	CCNGG	1 cut(s)	647
BmtI	GCTAGC	1 cut(s)	428
BpmI	CTGGAG	1 cut(s)	90
BpuEI	CTTGAG	2 cut(s)	603, 809
Bsa29I	ATCGAT	1 cut(s)	1062
BsaHI	GRCGYC	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	728
BsaJI	CCNNGG	1 cut(s)	1080
BsaWI	WCCGGW	1 cut(s)	815
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
Bse118I	RCCGGY	1 cut(s)	815
Bse1I	ACTGG	1 cut(s)	883
Bse21I	CCTNAGG	1 cut(s)	227
Bse3DI	GCAATG	2 cut(s)	425, 832
BseBI	CCWGG	1 cut(s)	647
BseCI	ATCGAT	1 cut(s)	1062
BseDI	CCNNGG	1 cut(s)	1080
BseGI	GGATG	1 cut(s)	700
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseMI	GCAATG	2 cut(s)	425, 832
BseMII	CTCAG	3 cut(s)	218, 242, 504
BseNI	ACTGG	1 cut(s)	883
BseXI	GCAGC	2 cut(s)	549, 626
BsgI	GTGCAG	1 cut(s)	633
BshFI	GGCC	1 cut(s)	1085
BshTI	ACCGGT	1 cut(s)	815
BshVI	ATCGAT	1 cut(s)	1062
BsiHKCI	CYCGRG	2 cut(s)	596, 800
BsiSI	CCGG	1 cut(s)	816
BslFI	GGGAC	1 cut(s)	723
BslI	CCNNNNNNNGG	1 cut(s)	344
BsmAI	GTCTC	4 cut(s)	499, 654, 728, 741
BsmFI	GGGAC	1 cut(s)	723
BsnI	GGCC	1 cut(s)	1085
Bso31I	GGTCTC	1 cut(s)	728
BsoBI	CYCGRG	2 cut(s)	596, 800
Bsp1407I	TGTACA	1 cut(s)	192
Bsp143I	GATC	7 cut(s)	158, 288, 547, 600, 975, 1042, 1059
Bsp19I	CCATGG	1 cut(s)	1080
BspACI	CCGC	2 cut(s)	768, 795
BspANI	GGCC	1 cut(s)	1085
BspCNI	CTCAG	3 cut(s)	219, 243, 503
BspDI	ATCGAT	1 cut(s)	1062
BspLI	GGNNCC	1 cut(s)	739
BspOI	GCTAGC	1 cut(s)	428
BspPI	GGATC	1 cut(s)	555
BspTNI	GGTCTC	1 cut(s)	728
BsrBI	CCGCTC	1 cut(s)	797
BsrDI	GCAATG	2 cut(s)	425, 832
BsrFI	RCCGGY	1 cut(s)	815
BsrGI	TGTACA	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	883
BssAI	RCCGGY	1 cut(s)	815
BssECI	CCNNGG	1 cut(s)	1080
BssMI	GATC	7 cut(s)	158, 288, 547, 600, 975, 1042, 1059
BssNI	GRCGYC	1 cut(s)	258
BssT1I	CCWWGG	1 cut(s)	1080
Bst2UI	CCWGG	1 cut(s)	647
Bst4CI	ACNGT	2 cut(s)	343, 373
Bst6I	CTCTTC	2 cut(s)	76, 560
BstACI	GRCGYC	1 cut(s)	258
BstAUI	TGTACA	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	426
BstDEI	CTNAG	5 cut(s)	227, 251, 478, 490, 563
BstDSI	CCRYGG	1 cut(s)	1080
BstEII	GGTNACC	1 cut(s)	818
BstF5I	GGATG	1 cut(s)	700
BstKTI	GATC	7 cut(s)	161, 291, 550, 603, 978, 1045, 1062
BstMAI	GTCTC	4 cut(s)	499, 654, 728, 741
BstMBI	GATC	7 cut(s)	158, 288, 547, 600, 975, 1042, 1059
BstMWI	GCNNNNNNNGC	2 cut(s)	1037, 1161
BstNI	CCWGG	1 cut(s)	647
BstPI	GGTNACC	1 cut(s)	818
BstSCI	CCNGG	1 cut(s)	645
BstSFI	CTRYAG	1 cut(s)	404
BstV1I	GCAGC	2 cut(s)	549, 626
BstX2I	RGATCY	1 cut(s)	158
BstYI	RGATCY	1 cut(s)	158
Bsu15I	ATCGAT	1 cut(s)	1062
Bsu36I	CCTNAGG	1 cut(s)	227
BsuI	GTATCC	1 cut(s)	1014
BsuRI	GGCC	1 cut(s)	1085
BsuTUI	ATCGAT	1 cut(s)	1062
BtgI	CCRYGG	1 cut(s)	1080
BtgZI	GCGATG	1 cut(s)	852
BtsCI	GGATG	1 cut(s)	700
BtsIMutI	CAGTG	1 cut(s)	876
Cac8I	GCNNGC	1 cut(s)	426
Cfr10I	RCCGGY	1 cut(s)	815
Cfr13I	GGNCC	1 cut(s)	737
ClaI	ATCGAT	1 cut(s)	1062
CseI	GACGC	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	193, 865
CspAI	ACCGGT	1 cut(s)	815
CviAII	CATG	3 cut(s)	22, 604, 1081
CviQI	GTAC	2 cut(s)	193, 865
DdeI	CTNAG	5 cut(s)	227, 251, 478, 490, 563
DpnI	GATC	7 cut(s)	160, 290, 549, 602, 977, 1044, 1061
DpnII	GATC	7 cut(s)	158, 288, 547, 600, 975, 1042, 1059
DrdI	GACNNNNNNGTC	1 cut(s)	133
DseDI	GACNNNNNNGTC	1 cut(s)	133
Eam1104I	CTCTTC	2 cut(s)	76, 560
EarI	CTCTTC	2 cut(s)	76, 560
Eco130I	CCWWGG	1 cut(s)	1080
Eco31I	GGTCTC	1 cut(s)	728
Eco47I	GGWCC	1 cut(s)	737
Eco57I	CTGAAG	1 cut(s)	1152
Eco81I	CCTNAGG	1 cut(s)	227
Eco88I	CYCGRG	2 cut(s)	596, 800
Eco91I	GGTNACC	1 cut(s)	818
EcoO109I	RGGNCCY	1 cut(s)	737
EcoO65I	GGTNACC	1 cut(s)	818
EcoRI	GAATTC	1 cut(s)	695
EcoRII	CCWGG	1 cut(s)	645
EcoT14I	CCWWGG	1 cut(s)	1080
ErhI	CCWWGG	1 cut(s)	1080
FaeI	CATG	3 cut(s)	25, 607, 1084
FaqI	GGGAC	1 cut(s)	723
FatI	CATG	3 cut(s)	21, 603, 1080
FbaI	TGATCA	1 cut(s)	1042
FblI	GTMKAC	1 cut(s)	403
Fnu4HI	GCNGC	3 cut(s)	538, 615, 795
FokI	GGATG	1 cut(s)	687
Fsp4HI	GCNGC	3 cut(s)	538, 615, 795
FspBI	CTAG	4 cut(s)	425, 729, 929, 1165
GluI	GCNGC	3 cut(s)	538, 615, 795
GsuI	CTGGAG	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	1085
HapII	CCGG	1 cut(s)	816
HgaI	GACGC	1 cut(s)	266
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	3 cut(s)	25, 607, 1084
HincII	GTYRAC	1 cut(s)	982
HindII	GTYRAC	1 cut(s)	982
HindIII	AAGCTT	1 cut(s)	923
HinfI	GANTC	5 cut(s)	350, 454, 966, 983, 1121
HpaII	CCGG	1 cut(s)	816
HphI	GGTGA	3 cut(s)	449, 463, 812
Hpy166II	GTNNAC	6 cut(s)	195, 404, 436, 517, 982, 1054
Hpy188I	TCNGA	5 cut(s)	293, 493, 705, 715, 1132
Hpy188III	TCNNGA	8 cut(s)	42, 107, 598, 740, 800, 826, 929, 1021
Hpy8I	GTNNAC	6 cut(s)	195, 404, 436, 517, 982, 1054
Hpy99I	CGWCG	3 cut(s)	121, 888, 1097
HpyAV	CCTTC	3 cut(s)	290, 728, 737
HpyCH4III	ACNGT	2 cut(s)	343, 373
HpyCH4IV	ACGT	3 cut(s)	465, 575, 759
HpyCH4V	TGCA	4 cut(s)	94, 614, 637, 996
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1037, 1161
HpyF3I	CTNAG	5 cut(s)	227, 251, 478, 490, 563
HpySE526I	ACGT	3 cut(s)	465, 575, 759
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	3 cut(s)	25, 607, 1084
Ksp22I	TGATCA	1 cut(s)	1042
Kzo9I	GATC	7 cut(s)	158, 288, 547, 600, 975, 1042, 1059
LmnI	GCTCC	2 cut(s)	109, 802
Lsp1109I	GCAGC	2 cut(s)	549, 626
MaeI	CTAG	4 cut(s)	425, 729, 929, 1165
MaeII	ACGT	3 cut(s)	465, 575, 759
MaeIII	GTNAC	4 cut(s)	254, 410, 760, 818
MalI	GATC	7 cut(s)	160, 290, 549, 602, 977, 1044, 1061
MbiI	CCGCTC	1 cut(s)	797
MboI	GATC	7 cut(s)	158, 288, 547, 600, 975, 1042, 1059
MboII	GAAGA	5 cut(s)	93, 351, 547, 704, 1145
MfeI	CAATTG	1 cut(s)	1008
MflI	RGATCY	1 cut(s)	158
MluCI	AATT	8 cut(s)	4, 110, 695, 707, 870, 1008, 1034, 1126
MlyI	GAGTC	1 cut(s)	977
MmeI	TCCRAC	2 cut(s)	197, 757
MseI	TTAA	6 cut(s)	113, 330, 381, 572, 686, 954
MslI	CAYNNNNRTG	1 cut(s)	837
MspI	CCGG	1 cut(s)	816
MspR9I	CCNGG	1 cut(s)	647
MunI	CAATTG	1 cut(s)	1008
MvaI	CCWGG	1 cut(s)	647
MwoI	GCNNNNNNNGC	2 cut(s)	1037, 1161
NcoI	CCATGG	1 cut(s)	1080
NdeII	GATC	7 cut(s)	158, 288, 547, 600, 975, 1042, 1059
NheI	GCTAGC	1 cut(s)	424
NlaIII	CATG	3 cut(s)	25, 607, 1084
NlaIV	GGNNCC	1 cut(s)	739
NmuCI	GTSAC	3 cut(s)	254, 410, 818
PaeR7I	CTCGAG	1 cut(s)	596
PfeI	GAWTC	4 cut(s)	350, 454, 966, 1121
PflFI	GACNNNGTC	1 cut(s)	399
PinAI	ACCGGT	1 cut(s)	815
PkrI	GCNGC	3 cut(s)	539, 616, 796
PleI	GAGTC	1 cut(s)	977
PpsI	GAGTC	1 cut(s)	977
PpuMI	RGGWCCY	1 cut(s)	737
PshBI	ATTAAT	1 cut(s)	954
Psp1406I	AACGTT	2 cut(s)	465, 575
Psp5II	RGGWCCY	1 cut(s)	737
Psp6I	CCWGG	1 cut(s)	645
PspEI	GGTNACC	1 cut(s)	818
PspGI	CCWGG	1 cut(s)	645
PspN4I	GGNNCC	1 cut(s)	739
PspPI	GGNCC	1 cut(s)	737
PspPPI	RGGWCCY	1 cut(s)	737
PsuI	RGATCY	1 cut(s)	158
PsyI	GACNNNGTC	1 cut(s)	399
RsaI	GTAC	2 cut(s)	194, 866
RsaNI	GTAC	2 cut(s)	193, 865
RseI	CAYNNNNRTG	1 cut(s)	837
SaqAI	TTAA	6 cut(s)	113, 330, 381, 572, 686, 954
SatI	GCNGC	3 cut(s)	538, 615, 795
Sau3AI	GATC	7 cut(s)	158, 288, 547, 600, 975, 1042, 1059
Sau96I	GGNCC	1 cut(s)	737
SchI	GAGTC	1 cut(s)	977
ScrFI	CCNGG	1 cut(s)	647
SfcI	CTRYAG	1 cut(s)	404
Sfr274I	CTCGAG	1 cut(s)	596
SinI	GGWCC	1 cut(s)	737
SlaI	CTCGAG	1 cut(s)	596
SmiMI	CAYNNNNRTG	1 cut(s)	837
SmlI	CTYRAG	3 cut(s)	596, 618, 824
SmoI	CTYRAG	3 cut(s)	596, 618, 824
Sse9I	AATT	8 cut(s)	4, 110, 695, 707, 870, 1008, 1034, 1126
SsiI	CCGC	2 cut(s)	768, 795
SspMI	CTAG	4 cut(s)	425, 729, 929, 1165
StyD4I	CCNGG	1 cut(s)	645
StyI	CCWWGG	1 cut(s)	1080
TaaI	ACNGT	2 cut(s)	343, 373
TaiI	ACGT	3 cut(s)	468, 578, 762
TaqI	TCGA	3 cut(s)	597, 1062, 1095
TasI	AATT	8 cut(s)	4, 110, 695, 707, 870, 1008, 1034, 1126
TatI	WGTACW	1 cut(s)	192
TauI	GCSGC	1 cut(s)	797
TfiI	GAWTC	4 cut(s)	350, 454, 966, 1121
Tru1I	TTAA	6 cut(s)	113, 330, 381, 572, 686, 954
Tru9I	TTAA	6 cut(s)	113, 330, 381, 572, 686, 954
TscAI	CASTG	1 cut(s)	883
TseFI	GTSAC	3 cut(s)	254, 410, 818
TseI	GCWGC	2 cut(s)	537, 614
Tsp45I	GTSAC	3 cut(s)	254, 410, 818
TspDTI	ATGAA	4 cut(s)	10, 17, 705, 917
TspRI	CASTG	1 cut(s)	883
Tth111I	GACNNNGTC	1 cut(s)	399
VpaK11BI	GGWCC	1 cut(s)	737
VspI	ATTAAT	1 cut(s)	954
XapI	RAATTY	2 cut(s)	695, 1126
XbaI	TCTAGA	1 cut(s)	928
XcmI	CCANNNNNNNNNTGG	1 cut(s)	49
XhoI	CTCGAG	1 cut(s)	596
XmiI	GTMKAC	1 cut(s)	403
XspI	CTAG	4 cut(s)	425, 729, 929, 1165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.