Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

9847933 .. 9850927

Gene Structure 2995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G17695.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGAGCTTTTCCCTTCACAACCTGACTTGTACTTGAAGATCAGCCGAAGAAGAGAAGAAGAACAAGAAAAAGAAAGTCAAGAACTACAAGAACAAGAAGTCGAAAGGAGATTAGGGTTTCAGAGTAAAGCCTCAGATTTAGACAACAAGTCTTCAAATAATCTCATCCACACTCTCCAGTTCACTTCAAACAATGAAGCCACCAAGATTAATAGTAATCAAGAACACAAGGAATCTCTCGATCAAGACTTGAGATCTATTTTTATGATGAGACCAATAAGAGGAATCCCTCTTTACCAGAATCAAGTCCTTGACCACTACTACTACTCATCTACCTCTCCCAATCCTTTCTTCTTCAGTGAAGTCAACGGTCAACATGCTAGTCGTCGCTTAATCACAAACCCTAATTGTAGTTTTAATCTCCACAACCGTCATCGGCGTCAAGCTCAACCGCAGCCGCCAAGATTCACCGCCAAAAGAGGAGTAAGGGCTCCAAGGATGCGGTGGACGACGACCCTCCACGCCCATTTTGTACACGCTGTTCAATTATTGGGTGGTCATGAAAGAGCAACCCCAAAATCAGTACTTGAGCTGATGGATGTGCAAGATCTCACATTGGCTCATGTTAAATCCCATCTACAGATGTATCGAACCATCAAGTCTACTGAAAAACCTACAACGTCATCAGGGCAGTCAGATTGTGAGAATGGATCACAAGTAAACAGTGAGAGAGAAGCAAGAAATCTCACGGGTCTATGGAATAACTCCTCAAGTGAAGCTCGGTTCCAGTTGAAGGCAAAGGCATCATCAGGTGTAGACATTTCATCCAATGAGAATGAATGGAAGAATCGAAGATGTCCAAGCAACGAACGGTTGTCGTCAGATTCGTCAAGCCTTACAGGGACAAGACCAGAGACTGAAACTCCCAATCTTGATTTCACTTTAGCTACACCAAACCTCTCTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

322

Amino Acids

36.92

Weight (kDa)

8.72

Isoelectric Point (pI)

61.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	166 - 217	5.6e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	662, 816
AciI	CCGC	4 cut(s)	452, 458, 471, 502
AclWI	GGATC	1 cut(s)	718
AcuI	CTGAAG	1 cut(s)	340
AcyI	GRCGYC	1 cut(s)	439
AfaI	GTAC	3 cut(s)	32, 534, 585
AfiI	CCNNNNNNNGG	2 cut(s)	281, 793
AgsI	TTSAA	5 cut(s)	37, 156, 189, 545, 793
AhdI	GACNNNNNGTC	1 cut(s)	148
AjuI	GAANNNNNNNTTGG	4 cut(s)	335, 367, 920, 952
AluBI	AGCT	5 cut(s)	7, 446, 592, 779, 947
AluI	AGCT	5 cut(s)	7, 446, 592, 779, 947
Alw26I	GTCTC	2 cut(s)	265, 908
AlwI	GGATC	1 cut(s)	718
AlwNI	CAGNNNCTG	1 cut(s)	917
ApeKI	GCWGC	1 cut(s)	454
AseI	ATTAAT	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	460
BaeI	ACNNNNGTAYC	2 cut(s)	629, 662
BanII	GRGCYC	1 cut(s)	493
BbsI	GAAGAC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	466
BccI	CCATC	3 cut(s)	589, 642, 662
BcoDI	GTCTC	2 cut(s)	265, 908
BfaI	CTAG	1 cut(s)	381
BfmI	CTRYAG	1 cut(s)	638
BglII	AGATCT	2 cut(s)	254, 607
BisI	GCNGC	2 cut(s)	455, 458
BlsI	GCNGC	2 cut(s)	456, 459
BmcAI	AGTACT	1 cut(s)	585
BmeRI	GACNNNNNGTC	1 cut(s)	148
BmiI	GGNNCC	2 cut(s)	492, 785
BmsI	GCATC	2 cut(s)	489, 812
BpiI	GAAGAC	1 cut(s)	144
BpmI	CTGGAG	1 cut(s)	161
BpuEI	CTTGAG	3 cut(s)	271, 608, 754
BsaHI	GRCGYC	1 cut(s)	439
BsaI	GGTCTC	1 cut(s)	265
BsaJI	CCNNGG	1 cut(s)	494
BsaXI	ACNNNNNCTCC	2 cut(s)	907, 937
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 793
Bse1I	ACTGG	2 cut(s)	178, 787
BseDI	CCNNGG	1 cut(s)	494
BseGI	GGATG	4 cut(s)	165, 504, 604, 824
BseLI	CCNNNNNNNGG	2 cut(s)	281, 793
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	2 cut(s)	178, 787
BseRI	GAGGAG	2 cut(s)	495, 757
BseXI	GCAGC	1 cut(s)	466
BslFI	GGGAC	1 cut(s)	916
BslI	CCNNNNNNNGG	2 cut(s)	281, 793
BsmAI	GTCTC	2 cut(s)	265, 908
BsmFI	GGGAC	1 cut(s)	916
Bso31I	GGTCTC	1 cut(s)	265
Bsp1286I	GDGCHC	1 cut(s)	493
Bsp1407I	TGTACA	1 cut(s)	532
Bsp143I	GATC	5 cut(s)	39, 241, 254, 607, 710
BspACI	CCGC	4 cut(s)	452, 458, 471, 502
BspCNI	CTCAG	1 cut(s)	146
BspHI	TCATGA	1 cut(s)	559
BspLI	GGNNCC	2 cut(s)	492, 785
BspPI	GGATC	1 cut(s)	718
BspTNI	GGTCTC	1 cut(s)	265
BsrGI	TGTACA	1 cut(s)	532
BsrI	ACTGG	2 cut(s)	178, 787
BssECI	CCNNGG	1 cut(s)	494
BssMI	GATC	5 cut(s)	39, 241, 254, 607, 710
BssNI	GRCGYC	1 cut(s)	439
BssT1I	CCWWGG	1 cut(s)	494
Bst4CI	ACNGT	4 cut(s)	371, 431, 725, 873
Bst6I	CTCTTC	1 cut(s)	46
BstACI	GRCGYC	1 cut(s)	439
BstAUI	TGTACA	1 cut(s)	532
BstDEI	CTNAG	1 cut(s)	133
BstF5I	GGATG	4 cut(s)	165, 504, 604, 824
BstKTI	GATC	5 cut(s)	42, 244, 257, 610, 713
BstMAI	GTCTC	2 cut(s)	265, 908
BstMBI	GATC	5 cut(s)	39, 241, 254, 607, 710
BstNSI	RCATGY	1 cut(s)	380
BstSFI	CTRYAG	1 cut(s)	638
BstV1I	GCAGC	1 cut(s)	466
BstV2I	GAAGAC	1 cut(s)	144
BstX2I	RGATCY	2 cut(s)	254, 607
BstYI	RGATCY	2 cut(s)	254, 607
BtsCI	GGATG	4 cut(s)	165, 504, 604, 824
BtsIMutI	CAGTG	2 cut(s)	364, 730
CaiI	CAGNNNCTG	1 cut(s)	917
CciI	TCATGA	1 cut(s)	559
CseI	GACGC	1 cut(s)	428
Csp6I	GTAC	3 cut(s)	31, 533, 584
CviAII	CATG	3 cut(s)	377, 560, 623
CviQI	GTAC	3 cut(s)	31, 533, 584
DdeI	CTNAG	1 cut(s)	133
DpnI	GATC	5 cut(s)	41, 243, 256, 609, 712
DpnII	GATC	5 cut(s)	39, 241, 254, 607, 710
DriI	GACNNNNNGTC	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	46
Eam1105I	GACNNNNNGTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	494
Eco24I	GRGCYC	1 cut(s)	493
Eco31I	GGTCTC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	494
EcoT38I	GRGCYC	1 cut(s)	493
ErhI	CCWWGG	1 cut(s)	494
FaeI	CATG	3 cut(s)	380, 563, 626
FaiI	YATR	5 cut(s)	266, 378, 561, 624, 757
FaqI	GGGAC	1 cut(s)	916
FatI	CATG	3 cut(s)	376, 559, 622
FblI	GTMKAC	2 cut(s)	662, 816
Fnu4HI	GCNGC	2 cut(s)	455, 458
FokI	GGATG	4 cut(s)	152, 511, 611, 811
FriOI	GRGCYC	1 cut(s)	493
Fsp4HI	GCNGC	2 cut(s)	455, 458
FspBI	CTAG	1 cut(s)	381
GluI	GCNGC	2 cut(s)	455, 458
GsuI	CTGGAG	1 cut(s)	161
HgaI	GACGC	1 cut(s)	428
Hin1I	GRCGYC	1 cut(s)	439
Hin1II	CATG	3 cut(s)	380, 563, 626
HincII	GTYRAC	2 cut(s)	367, 374
HindII	GTYRAC	2 cut(s)	367, 374
HinfI	GANTC	6 cut(s)	233, 285, 301, 465, 847, 884
HphI	GGTGA	1 cut(s)	460
Hpy166II	GTNNAC	8 cut(s)	183, 367, 374, 507, 535, 663, 721, 817
Hpy188I	TCNGA	4 cut(s)	123, 136, 697, 883
Hpy188III	TCNNGA	6 cut(s)	80, 221, 239, 245, 560, 932
Hpy8I	GTNNAC	8 cut(s)	183, 367, 374, 507, 535, 663, 721, 817
Hpy99I	CGWCG	2 cut(s)	390, 514
HpyAV	CCTTC	2 cut(s)	24, 787
HpyCH4III	ACNGT	4 cut(s)	371, 431, 725, 873
HpyCH4IV	ACGT	1 cut(s)	680
HpyCH4V	TGCA	1 cut(s)	604
HpyF3I	CTNAG	1 cut(s)	133
HpySE526I	ACGT	1 cut(s)	680
Hsp92I	GRCGYC	1 cut(s)	439
Hsp92II	CATG	3 cut(s)	380, 563, 626
Kzo9I	GATC	5 cut(s)	39, 241, 254, 607, 710
LmnI	GCTCC	2 cut(s)	4, 496
LpnPI	CCDG	8 cut(s)	36, 191, 311, 672, 795, 800, 885, 924
Lsp1109I	GCAGC	1 cut(s)	466
LweI	GCATC	2 cut(s)	489, 812
MaeI	CTAG	1 cut(s)	381
MaeII	ACGT	1 cut(s)	680
MalI	GATC	5 cut(s)	41, 243, 256, 609, 712
MboI	GATC	5 cut(s)	39, 241, 254, 607, 710
MflI	RGATCY	2 cut(s)	254, 607
MhlI	GDGCHC	1 cut(s)	493
MluCI	AATT	2 cut(s)	406, 545
MnlI	CCTC	8 cut(s)	142, 275, 300, 346, 473, 527, 778, 968
MseI	TTAA	4 cut(s)	210, 392, 417, 627
NdeII	GATC	5 cut(s)	39, 241, 254, 607, 710
NlaIII	CATG	3 cut(s)	380, 563, 626
NlaIV	GGNNCC	2 cut(s)	492, 785
NspI	RCATGY	1 cut(s)	380
PagI	TCATGA	1 cut(s)	559
PcsI	WCGNNNNNNNCGW	1 cut(s)	884
PfeI	GAWTC	6 cut(s)	233, 285, 301, 465, 847, 884
PkrI	GCNGC	2 cut(s)	456, 459
PshBI	ATTAAT	1 cut(s)	210
PspN4I	GGNNCC	2 cut(s)	492, 785
PsrI	GAACNNNNNNTAC	2 cut(s)	525, 557
PstNI	CAGNNNCTG	1 cut(s)	917
PsuI	RGATCY	2 cut(s)	254, 607
RsaI	GTAC	3 cut(s)	32, 534, 585
RsaNI	GTAC	3 cut(s)	31, 533, 584
SaqAI	TTAA	4 cut(s)	210, 392, 417, 627
SatI	GCNGC	2 cut(s)	455, 458
Sau3AI	GATC	5 cut(s)	39, 241, 254, 607, 710
ScaI	AGTACT	1 cut(s)	585
SduI	GDGCHC	1 cut(s)	493
SfaNI	GCATC	2 cut(s)	489, 812
SfcI	CTRYAG	1 cut(s)	638
SmlI	CTYRAG	3 cut(s)	250, 587, 769
SmoI	CTYRAG	3 cut(s)	250, 587, 769
Sse9I	AATT	2 cut(s)	406, 545
SsiI	CCGC	4 cut(s)	452, 458, 471, 502
SspMI	CTAG	1 cut(s)	381
StyI	CCWWGG	1 cut(s)	494
TaaI	ACNGT	4 cut(s)	371, 431, 725, 873
TaiI	ACGT	1 cut(s)	683
TaqI	TCGA	4 cut(s)	102, 240, 649, 850
TasI	AATT	2 cut(s)	406, 545
TatI	WGTACW	3 cut(s)	30, 532, 583
TauI	GCSGC	1 cut(s)	460
TfiI	GAWTC	6 cut(s)	233, 285, 301, 465, 847, 884
Tru1I	TTAA	4 cut(s)	210, 392, 417, 627
Tru9I	TTAA	4 cut(s)	210, 392, 417, 627
TscAI	CASTG	2 cut(s)	364, 730
TseI	GCWGC	1 cut(s)	454
TspDTI	ATGAA	4 cut(s)	210, 576, 813, 852
TspRI	CASTG	2 cut(s)	364, 730
VspI	ATTAAT	1 cut(s)	210
XceI	RCATGY	1 cut(s)	380
XcmI	CCANNNNNNNNNTGG	1 cut(s)	501
XmiI	GTMKAC	2 cut(s)	662, 816
XspI	CTAG	1 cut(s)	381
ZrmI	AGTACT	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.