Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

10091101 .. 10092224

Gene Structure 1124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G18253.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCGAAAAGGCTGCCATTGATTTTCCTCCTTACTTCACATTTTTTAGTATCGGGAGTGTTGTCCATGAGTATCCTTACCATAGAGAACAAGTGCAATCACACAGTTTGGCCAGTTATCTTCTCATGGAACGTTGACTCACAAGTCTCCCCAACAGGCTTTGCTCTCAGAAGAGGGGAGGCTCGAGCCCTACAGGCGCCATCTTCATGGTACGGTCTTATCTCGGCTAGGACGCTATGCTCCATCGACTCAACAGGAACATTCTCTTGCGCCACAGGAGACTGCGAATCGGGTACGATCGAGTGTCCTGGCAATTACGGTTGGGCTCCGGTGACTTATGTCTACTTTAGAATGAACAGCTACACCATCAGTGTTGAGTACGGTTACAACCTTCCACTAATGGTGGTCCCTTCACAGCGTAGCCGGACATGTATCAGCGCTGGTTGCGTTGTTGAACTGAAAAAGACTTGTCCAAAAGATCTTATGAAAATGTCCAGAGAAAATCTAGTCGCCTGTAGTAGCACGTGCATGGAGTTTGATACTCCGGAGGCTTGTTGCACCCGAGACTTCAAGTCAAAGCAAAACTGCAAGCCGACAGTGTACACGCAGAACTTTGAGCGAGCTTGCCCACTCGCTCATATCTACGCCTATGATGATAACAATAGCACCGTTACATGCCTAAACTCTACTGACTACGTCATCACGTTTTGTCCTTCAAACAAAACTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Thaumatin

Protein Analysis

243

Amino Acids

27.02

Weight (kDa)

7.84

Isoelectric Point (pI)

56.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	30 - 238	5.1e-61	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	143
AccB1I	GGYRCC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	342
AccIII	TCCGGA	1 cut(s)	544
AclI	AACGTT	1 cut(s)	132
AcoI	YGGCCR	1 cut(s)	110
AcvI	CACGTG	1 cut(s)	525
AcyI	GRCGYC	1 cut(s)	197
AfaI	GTAC	4 cut(s)	212, 295, 380, 602
AfeI	AGCGCT	1 cut(s)	439
AflIII	ACRYGT	1 cut(s)	428
AgsI	TTSAA	3 cut(s)	455, 571, 717
AhdI	GACNNNNNGTC	1 cut(s)	571
AjnI	CCWGG	1 cut(s)	307
AluBI	AGCT	2 cut(s)	360, 623
AluI	AGCT	2 cut(s)	360, 623
Alw26I	GTCTC	3 cut(s)	151, 273, 558
Ama87I	CYCGRG	2 cut(s)	183, 561
Aor13HI	TCCGGA	1 cut(s)	544
Aor51HI	AGCGCT	1 cut(s)	439
AoxI	GGCC	1 cut(s)	110
ApeKI	GCWGC	1 cut(s)	13
AspLEI	GCGC	3 cut(s)	199, 272, 440
AspS9I	GGNCC	1 cut(s)	406
AsuHPI	GGTGA	1 cut(s)	343
AvaI	CYCGRG	2 cut(s)	183, 561
AvaII	GGWCC	1 cut(s)	406
BalI	TGGCCA	1 cut(s)	112
BanI	GGYRCC	1 cut(s)	196
BanII	GRGCYC	2 cut(s)	190, 328
BbrPI	CACGTG	1 cut(s)	525
BccI	CCATC	3 cut(s)	208, 251, 374
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	309
BciVI	GTATCC	1 cut(s)	83
BcoDI	GTCTC	3 cut(s)	151, 273, 558
BfaI	CTAG	2 cut(s)	228, 506
BfmI	CTRYAG	2 cut(s)	191, 514
BfoI	RGCGCY	2 cut(s)	200, 441
BfuI	GTATCC	1 cut(s)	83
BglI	GCCNNNNNGGC	1 cut(s)	194
BglII	AGATCT	1 cut(s)	478
BisI	GCNGC	1 cut(s)	14
BlsI	GCNGC	1 cut(s)	15
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	1 cut(s)	406
BmeRI	GACNNNNNGTC	1 cut(s)	571
BmeT110I	CYCGRG	2 cut(s)	183, 561
BmgT120I	GGNCC	1 cut(s)	406
BmiI	GGNNCC	3 cut(s)	198, 327, 408
BmrFI	CCNGG	1 cut(s)	309
BoxI	GACNNNNGTC	1 cut(s)	338
BsaAI	YACGTR	1 cut(s)	525
BsaHI	GRCGYC	1 cut(s)	197
BsaWI	WCCGGW	2 cut(s)	328, 544
Bse1I	ACTGG	1 cut(s)	113
BseAI	TCCGGA	1 cut(s)	544
BseBI	CCWGG	1 cut(s)	309
BseMII	CTCAG	1 cut(s)	181
BseNI	ACTGG	1 cut(s)	113
Bsh1285I	CGRYCG	1 cut(s)	300
BshFI	GGCC	1 cut(s)	112
BshNI	GGYRCC	1 cut(s)	196
BsiEI	CGRYCG	1 cut(s)	300
BsiHKCI	CYCGRG	2 cut(s)	183, 561
BsiSI	CCGG	3 cut(s)	329, 424, 545
BslFI	GGGAC	1 cut(s)	392
BsmAI	GTCTC	3 cut(s)	151, 273, 558
BsmFI	GGGAC	1 cut(s)	392
BsnI	GGCC	1 cut(s)	112
BsoBI	CYCGRG	2 cut(s)	183, 561
Bsp1286I	GDGCHC	2 cut(s)	190, 328
Bsp13I	TCCGGA	1 cut(s)	544
Bsp1407I	TGTACA	1 cut(s)	600
Bsp143I	GATC	2 cut(s)	297, 478
BspANI	GGCC	1 cut(s)	112
BspCNI	CTCAG	1 cut(s)	180
BspEI	TCCGGA	1 cut(s)	544
BspLI	GGNNCC	3 cut(s)	198, 327, 408
BspT107I	GGYRCC	1 cut(s)	196
BsrGI	TGTACA	1 cut(s)	600
BsrI	ACTGG	1 cut(s)	113
BssMI	GATC	2 cut(s)	297, 478
BssNI	GRCGYC	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	6 cut(s)	106, 215, 320, 383, 598, 670
Bst6I	CTCTTC	1 cut(s)	166
BstACI	GRCGYC	1 cut(s)	197
BstAUI	TGTACA	1 cut(s)	600
BstBAI	YACGTR	1 cut(s)	525
BstC8I	GCNNGC	3 cut(s)	590, 621, 625
BstDEI	CTNAG	1 cut(s)	167
BstH2I	RGCGCY	2 cut(s)	200, 441
BstHHI	GCGC	3 cut(s)	199, 272, 440
BstKTI	GATC	2 cut(s)	300, 481
BstMAI	GTCTC	3 cut(s)	151, 273, 558
BstMBI	GATC	2 cut(s)	297, 478
BstMCI	CGRYCG	1 cut(s)	300
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 444
BstNI	CCWGG	1 cut(s)	309
BstNSI	RCATGY	2 cut(s)	432, 678
BstPAI	GACNNNNGTC	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	307
BstSFI	CTRYAG	2 cut(s)	191, 514
BstX2I	RGATCY	1 cut(s)	478
BstXI	CCANNNNNNTGG	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	478
BsuI	GTATCC	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	112
BtsIMutI	CAGTG	2 cut(s)	376, 603
Cac8I	GCNNGC	3 cut(s)	590, 621, 625
CfoI	GCGC	3 cut(s)	199, 272, 440
Cfr13I	GGNCC	1 cut(s)	406
CseI	GACGC	1 cut(s)	241
Csp6I	GTAC	4 cut(s)	211, 294, 379, 601
CviAII	CATG	6 cut(s)	67, 126, 207, 429, 529, 675
CviQI	GTAC	4 cut(s)	211, 294, 379, 601
DdeI	CTNAG	1 cut(s)	167
DinI	GGCGCC	1 cut(s)	198
DpnI	GATC	2 cut(s)	299, 480
DpnII	GATC	2 cut(s)	297, 478
DrdI	GACNNNNNNGTC	1 cut(s)	143
DriI	GACNNNNNGTC	1 cut(s)	571
DseDI	GACNNNNNNGTC	1 cut(s)	143
EaeI	YGGCCR	1 cut(s)	110
Eam1104I	CTCTTC	1 cut(s)	166
Eam1105I	GACNNNNNGTC	1 cut(s)	571
EarI	CTCTTC	1 cut(s)	166
Eco24I	GRGCYC	2 cut(s)	190, 328
Eco47I	GGWCC	1 cut(s)	406
Eco47III	AGCGCT	1 cut(s)	439
Eco72I	CACGTG	1 cut(s)	525
Eco88I	CYCGRG	2 cut(s)	183, 561
EcoRII	CCWGG	1 cut(s)	307
EcoT38I	GRGCYC	2 cut(s)	190, 328
EgeI	GGCGCC	1 cut(s)	198
EheI	GGCGCC	1 cut(s)	198
FaeI	CATG	6 cut(s)	70, 129, 210, 432, 532, 678
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	6 cut(s)	66, 125, 206, 428, 528, 674
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	1 cut(s)	14
FriOI	GRGCYC	2 cut(s)	190, 328
Fsp4HI	GCNGC	1 cut(s)	14
FspBI	CTAG	2 cut(s)	228, 506
GlaI	GCGC	3 cut(s)	198, 271, 439
GluI	GCNGC	1 cut(s)	14
HaeII	RGCGCY	2 cut(s)	200, 441
HaeIII	GGCC	1 cut(s)	112
HapII	CCGG	3 cut(s)	329, 424, 545
HgaI	GACGC	1 cut(s)	241
HhaI	GCGC	3 cut(s)	199, 272, 440
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	6 cut(s)	70, 129, 210, 432, 532, 678
Hin6I	GCGC	3 cut(s)	197, 270, 438
HinP1I	GCGC	3 cut(s)	197, 270, 438
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	3 cut(s)	137, 248, 287
HpaII	CCGG	3 cut(s)	329, 424, 545
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	4 cut(s)	136, 343, 601, 603
Hpy188I	TCNGA	1 cut(s)	170
Hpy188III	TCNNGA	3 cut(s)	54, 495, 545
Hpy8I	GTNNAC	4 cut(s)	136, 343, 601, 603
HpyAV	CCTTC	3 cut(s)	401, 420, 723
HpyCH4III	ACNGT	6 cut(s)	106, 215, 320, 383, 598, 670
HpyCH4IV	ACGT	4 cut(s)	132, 524, 696, 704
HpyCH4V	TGCA	4 cut(s)	96, 528, 558, 588
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 444
HpyF3I	CTNAG	1 cut(s)	167
HpySE526I	ACGT	4 cut(s)	132, 524, 696, 704
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	6 cut(s)	70, 129, 210, 432, 532, 678
HspAI	GCGC	3 cut(s)	197, 270, 438
KasI	GGCGCC	1 cut(s)	196
Kpn2I	TCCGGA	1 cut(s)	544
Kzo9I	GATC	2 cut(s)	297, 478
LmnI	GCTCC	2 cut(s)	245, 331
MaeI	CTAG	2 cut(s)	228, 506
MaeII	ACGT	4 cut(s)	132, 524, 696, 704
MaeIII	GTNAC	3 cut(s)	331, 383, 670
MalI	GATC	2 cut(s)	299, 480
MboI	GATC	2 cut(s)	297, 478
MboII	GAAGA	3 cut(s)	112, 183, 195
MflI	RGATCY	1 cut(s)	478
MhlI	GDGCHC	2 cut(s)	190, 328
MlsI	TGGCCA	1 cut(s)	112
MluCI	AATT	2 cut(s)	313, 727
MluNI	TGGCCA	1 cut(s)	112
Mly113I	GGCGCC	1 cut(s)	197
MlyI	GAGTC	2 cut(s)	131, 242
MnlI	CCTC	4 cut(s)	38, 167, 172, 541
Mox20I	TGGCCA	1 cut(s)	112
MroI	TCCGGA	1 cut(s)	544
MscI	TGGCCA	1 cut(s)	112
MslI	CAYNNNNRTG	2 cut(s)	205, 527
Msp20I	TGGCCA	1 cut(s)	112
MspI	CCGG	3 cut(s)	329, 424, 545
MspR9I	CCNGG	1 cut(s)	309
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	2 cut(s)	194, 444
NarI	GGCGCC	1 cut(s)	197
NdeII	GATC	2 cut(s)	297, 478
NlaIII	CATG	6 cut(s)	70, 129, 210, 432, 532, 678
NlaIV	GGNNCC	3 cut(s)	198, 327, 408
NmeAIII	GCCGAG	1 cut(s)	203
NmuCI	GTSAC	1 cut(s)	331
NspI	RCATGY	2 cut(s)	432, 678
PaeR7I	CTCGAG	1 cut(s)	183
PciI	ACATGT	1 cut(s)	428
PfeI	GAWTC	1 cut(s)	287
PflFI	GACNNNGTC	1 cut(s)	695
PkrI	GCNGC	1 cut(s)	15
Ple19I	CGATCG	1 cut(s)	300
PleI	GAGTC	2 cut(s)	131, 242
PluTI	GGCGCC	1 cut(s)	200
PmaCI	CACGTG	1 cut(s)	525
PmlI	CACGTG	1 cut(s)	525
PpsI	GAGTC	2 cut(s)	131, 242
Ppu21I	YACGTR	1 cut(s)	525
PscI	ACATGT	1 cut(s)	428
PshAI	GACNNNNGTC	1 cut(s)	338
Psp1406I	AACGTT	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	307
PspCI	CACGTG	1 cut(s)	525
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	3 cut(s)	198, 327, 408
PspPI	GGNCC	1 cut(s)	406
PspXI	VCTCGAGB	1 cut(s)	183
PsuI	RGATCY	1 cut(s)	478
PsyI	GACNNNGTC	1 cut(s)	695
PvuI	CGATCG	1 cut(s)	300
RsaI	GTAC	4 cut(s)	212, 295, 380, 602
RsaNI	GTAC	4 cut(s)	211, 294, 379, 601
RseI	CAYNNNNRTG	2 cut(s)	205, 527
SatI	GCNGC	1 cut(s)	14
Sau3AI	GATC	2 cut(s)	297, 478
Sau96I	GGNCC	1 cut(s)	406
SchI	GAGTC	2 cut(s)	131, 242
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	2 cut(s)	190, 328
SetI	ASST	7 cut(s)	135, 362, 393, 527, 625, 699, 707
SfcI	CTRYAG	2 cut(s)	191, 514
SfoI	GGCGCC	1 cut(s)	198
Sfr274I	CTCGAG	1 cut(s)	183
SinI	GGWCC	1 cut(s)	406
SlaI	CTCGAG	1 cut(s)	183
SmiMI	CAYNNNNRTG	2 cut(s)	205, 527
SmlI	CTYRAG	1 cut(s)	183
SmoI	CTYRAG	1 cut(s)	183
Sse9I	AATT	2 cut(s)	313, 727
SspDI	GGCGCC	1 cut(s)	196
SspMI	CTAG	2 cut(s)	228, 506
StyD4I	CCNGG	1 cut(s)	307
TaaI	ACNGT	6 cut(s)	106, 215, 320, 383, 598, 670
TaiI	ACGT	4 cut(s)	135, 527, 699, 707
TaqI	TCGA	3 cut(s)	184, 246, 300
TasI	AATT	2 cut(s)	313, 727
TatI	WGTACW	1 cut(s)	600
TfiI	GAWTC	1 cut(s)	287
TscAI	CASTG	2 cut(s)	376, 603
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	1 cut(s)	13
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	3 cut(s)	195, 368, 500
TspRI	CASTG	2 cut(s)	376, 603
Tth111I	GACNNNGTC	1 cut(s)	695
VpaK11BI	GGWCC	1 cut(s)	406
XceI	RCATGY	2 cut(s)	432, 678
XhoI	CTCGAG	1 cut(s)	183
XmiI	GTMKAC	1 cut(s)	342
XspI	CTAG	2 cut(s)	228, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.