AT4G24600

Calcium-dependent protein kinase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
N/A
Physical Location & Seq
Forward (+)
12699973 .. 12700478
506 bp
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UTR
Exon/CDS
Intron
AT4G24600.1

Sequence Viewer

Length: 375 bp
ATGGAGAAAGATCCAGATTTCGCAGTCTCTCTGTTGTGGGATGGTGAAAACACCCCTGTTGAGGTTGATCAGGTAGATAATTTGATAAACAACATTGAAGCTTCTGTGAGAACTGCTGACCCAAGATATCATCTTGCTCAAAGGAAGGTTCTAGTGGGACATGAAAATCTCGACTTTATCAAGGAGAATGAAAAGTCTCTACAGGTACAAGGTTTCCGCTTGATCAAACCACCCTATCGAGAGCGTAAATGCGTCATATGTGATGGTTCAGTTCAAACATCACGTCACAAACGCTACCCTTACGAGCGGCCTTATGACGTAGCTGACAGACTAATACTACAAGAATTACTTGTGCAAAAGTTGCTATGTTTTTAA

Protein Analysis

124

Amino Acids

14.53

Weight (kDa)

5.92

Isoelectric Point (pI)

27.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 307
AciI CCGC 2 cut(s) 217, 307
AclWI GGATC 1 cut(s) 5
AfaI GTAC 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 61
AgsI TTSAA 2 cut(s) 98, 275
AjiI CACGTC 1 cut(s) 284
AluBI AGCT 2 cut(s) 101, 323
AluI AGCT 2 cut(s) 101, 323
Alw26I GTCTC 2 cut(s) 31, 201
AlwI GGATC 1 cut(s) 5
AoxI GGCC 1 cut(s) 308
ArsI GACNNNNNNTTYG 2 cut(s) 268, 300
AsuHPI GGTGA 1 cut(s) 56
BccI CCATC 2 cut(s) 35, 257
BclI TGATCA 2 cut(s) 67, 222
BcoDI GTCTC 2 cut(s) 31, 201
BfaI CTAG 1 cut(s) 152
BfmI CTRYAG 1 cut(s) 200
BisI GCNGC 1 cut(s) 308
BlsI GCNGC 1 cut(s) 309
BmgBI CACGTC 1 cut(s) 284
Bsc4I CCNNNNNNNGG 1 cut(s) 61
BseGI GGATG 1 cut(s) 46
BseLI CCNNNNNNNGG 1 cut(s) 61
BshFI GGCC 1 cut(s) 310
BslFI GGGAC 1 cut(s) 171
BslI CCNNNNNNNGG 1 cut(s) 61
BsmAI GTCTC 2 cut(s) 31, 201
BsmFI GGGAC 1 cut(s) 171
BsnI GGCC 1 cut(s) 310
Bsp143I GATC 3 cut(s) 10, 67, 222
BspACI CCGC 2 cut(s) 217, 307
BspANI GGCC 1 cut(s) 310
BspPI GGATC 1 cut(s) 5
BsrBI CCGCTC 1 cut(s) 307
BssMI GATC 3 cut(s) 10, 67, 222
BstAPI GCANNNNNTGC 1 cut(s) 361
BstF5I GGATG 1 cut(s) 46
BstKTI GATC 3 cut(s) 13, 70, 225
BstMAI GTCTC 2 cut(s) 31, 201
BstMBI GATC 3 cut(s) 10, 67, 222
BstMWI GCNNNNNNNGC 1 cut(s) 361
BstSFI CTRYAG 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BsuRI GGCC 1 cut(s) 310
BtrI CACGTC 1 cut(s) 284
BtsCI GGATG 1 cut(s) 46
CseI GACGC 1 cut(s) 241
Csp6I GTAC 1 cut(s) 206
CviAII CATG 1 cut(s) 161
CviJI RGCY 3 cut(s) 101, 310, 323
CviKI_1 RGCY 3 cut(s) 101, 310, 323
CviQI GTAC 1 cut(s) 206
DpnI GATC 3 cut(s) 12, 69, 224
DpnII GATC 3 cut(s) 10, 67, 222
Eco32I GATATC 1 cut(s) 128
EcoRV GATATC 1 cut(s) 128
FaeI CATG 1 cut(s) 164
FaiI YATR 5 cut(s) 162, 257, 259, 315, 367
FalI AAGNNNNNCTT 2 cut(s) 333, 365
FaqI GGGAC 1 cut(s) 171
FatI CATG 1 cut(s) 160
FauNDI CATATG 1 cut(s) 257
FbaI TGATCA 2 cut(s) 67, 222
Fnu4HI GCNGC 1 cut(s) 308
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 308
FspBI CTAG 1 cut(s) 152
GluI GCNGC 1 cut(s) 308
HaeIII GGCC 1 cut(s) 310
HgaI GACGC 1 cut(s) 241
Hin1II CATG 1 cut(s) 164
HindIII AAGCTT 1 cut(s) 99
HphI GGTGA 1 cut(s) 56
Hpy188III TCNNGA 3 cut(s) 14, 170, 239
HpyAV CCTTC 1 cut(s) 139
HpyCH4IV ACGT 2 cut(s) 283, 318
HpyCH4V TGCA 1 cut(s) 355
HpyF10VI GCNNNNNNNGC 1 cut(s) 361
HpySE526I ACGT 2 cut(s) 283, 318
Hsp92II CATG 1 cut(s) 164
Ksp22I TGATCA 2 cut(s) 67, 222
Kzo9I GATC 3 cut(s) 10, 67, 222
LpnPI CCDG 4 cut(s) 27, 56, 69, 188
MaeI CTAG 1 cut(s) 152
MaeII ACGT 2 cut(s) 283, 318
MaeIII GTNAC 1 cut(s) 284
MalI GATC 3 cut(s) 12, 69, 224
MbiI CCGCTC 1 cut(s) 307
MboI GATC 3 cut(s) 10, 67, 222
MflI RGATCY 1 cut(s) 10
MluCI AATT 2 cut(s) 79, 344
MnlI CCTC 1 cut(s) 55
MseI TTAA 1 cut(s) 373
MwoI GCNNNNNNNGC 1 cut(s) 361
NdeI CATATG 1 cut(s) 257
NdeII GATC 3 cut(s) 10, 67, 222
NlaIII CATG 1 cut(s) 164
NmuCI GTSAC 1 cut(s) 284
PkrI GCNGC 1 cut(s) 309
PsuI RGATCY 1 cut(s) 10
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
SaqAI TTAA 1 cut(s) 373
SatI GCNGC 1 cut(s) 308
Sau3AI GATC 3 cut(s) 10, 67, 222
SetI ASST 9 cut(s) 66, 75, 103, 150, 207, 214, 286, 321, 325
SfcI CTRYAG 1 cut(s) 200
Sse9I AATT 2 cut(s) 79, 344
SsiI CCGC 2 cut(s) 217, 307
SspMI CTAG 1 cut(s) 152
TaiI ACGT 2 cut(s) 286, 321
TaqI TCGA 2 cut(s) 171, 238
TasI AATT 2 cut(s) 79, 344
TauI GCSGC 1 cut(s) 310
Tru1I TTAA 1 cut(s) 373
Tru9I TTAA 1 cut(s) 373
TseFI GTSAC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 2 cut(s) 177, 204
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.