Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

16095392 .. 16096774

Gene Structure 1383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G33450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGAGATGTCTAGAGGAAGCAACAGTTTTGACAATAAGAAGCCTAGTTGCCAAAGAGGTCACTGGAGACCTGTTGAAGATGACAATCTCCGGCAACTCGTTGAACAATACGGTCCCAAGAACTGGAATTTTATTGCTCAACATCTCTATGGAAGATCAGGGAAAAGCTGTAGATTAAGATGGTACAACCAACTTGATCCAAACATCACCAAGAAACCCTTCACCGAGGAGGAAGAAGAGAGACTGCTTAAAGCTCATCGGATCCAAGGGAATCGTTGGGCCTCCATAGCCCGACTGTTCCCCGGGAGGACCGACAACGCTGTCAAAAACCATTTTCATGTCATCATGGCTAGACGCAAACGGGAAAACTTCTCTTCCACGGCTACTTCTACGTTCAACCAAACTTGGCATACTGTTTTGAGCCCTAGTTCTAGTCTTACAAGGCTAAATAGATCCCATTTCGGGCTATGGAGGTATCGAAAGGATAAGAGTTGCGGTCTCTGGCCTTACTCTTTTGTTTCACCACCTACGAATGGTCAATTTGGATCTTCATCTGTCTCTAACGTACACCACGAAATTTATCTTGAGAGGAGAAAGTCGAAAGAGTTGGTGGATCCTCAGAATTACACATTTCATGCAGCCACACCAGATCATAAGATGACTTCAAATGAAGATGGACCATCCATGGGAGATGATGGTGAGAAGAACGATGTTACTTTCATTGATTTTCTTGGTGTTGGATTAGCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

250

Amino Acids

28.94

Weight (kDa)

9.53

Isoelectric Point (pI)

52.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	19 - 65	1.5e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	22 - 82	3.9e-19	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	71 - 113	4.1e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	74 - 128	6.2e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	320
AccB7I	CCANNNNNTGG	1 cut(s)	123
AciI	CCGC	1 cut(s)	495
AclWI	GGATC	7 cut(s)	191, 256, 269, 447, 553, 608, 621
AcsI	RAATTY	2 cut(s)	127, 576
AfaI	GTAC	2 cut(s)	185, 567
AfiI	CCNNNNNNNGG	4 cut(s)	123, 462, 533, 686
AgsI	TTSAA	4 cut(s)	77, 104, 397, 666
AjuI	GAANNNNNNNTTGG	2 cut(s)	203, 235
AluBI	AGCT	3 cut(s)	168, 254, 746
AluI	AGCT	3 cut(s)	168, 254, 746
Alw26I	GTCTC	4 cut(s)	61, 235, 503, 562
AlwI	GGATC	7 cut(s)	191, 256, 269, 447, 553, 608, 621
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	2 cut(s)	279, 503
ApeKI	GCWGC	1 cut(s)	638
ApoI	RAATTY	2 cut(s)	127, 576
Asp700I	GAANNNNTTC	1 cut(s)	218
AspS9I	GGNCC	4 cut(s)	113, 279, 309, 677
AsuC2I	CCSGG	2 cut(s)	303, 304
AsuHPI	GGTGA	4 cut(s)	199, 214, 513, 710
AvaI	CYCGRG	1 cut(s)	302
AvaII	GGWCC	3 cut(s)	113, 309, 677
BamHI	GGATCC	2 cut(s)	261, 613
BanII	GRGCYC	1 cut(s)	425
BbvI	GCAGC	1 cut(s)	650
BccI	CCATC	4 cut(s)	174, 668, 688, 689
BceAI	ACGGC	1 cut(s)	396
BcnI	CCSGG	2 cut(s)	303, 304
BcoDI	GTCTC	4 cut(s)	61, 235, 503, 562
BfaI	CTAG	5 cut(s)	12, 45, 351, 426, 432
BfmI	CTRYAG	1 cut(s)	169
BisI	GCNGC	1 cut(s)	639
BlsI	GCNGC	1 cut(s)	640
Bme1390I	CCNGG	2 cut(s)	303, 304
Bme18I	GGWCC	3 cut(s)	113, 309, 677
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	4 cut(s)	113, 279, 309, 677
BmiI	GGNNCC	3 cut(s)	115, 263, 615
BmrFI	CCNGG	2 cut(s)	303, 304
BpmI	CTGGAG	1 cut(s)	85
BpuEI	CTTGAG	1 cut(s)	605
BpuMI	CCSGG	2 cut(s)	303, 304
BsaBI	GATNNNNATC	2 cut(s)	84, 550
BsaI	GGTCTC	2 cut(s)	61, 503
BsaJI	CCNNGG	6 cut(s)	225, 265, 301, 302, 378, 684
Bsc4I	CCNNNNNNNGG	4 cut(s)	123, 462, 533, 686
Bse1I	ACTGG	2 cut(s)	68, 128
Bse8I	GATNNNNATC	2 cut(s)	84, 550
BseDI	CCNNGG	6 cut(s)	225, 265, 301, 302, 378, 684
BseGI	GGATG	1 cut(s)	680
BseJI	GATNNNNATC	2 cut(s)	84, 550
BseLI	CCNNNNNNNGG	4 cut(s)	123, 462, 533, 686
BseMII	CTCAG	1 cut(s)	632
BseNI	ACTGG	2 cut(s)	68, 128
BseRI	GAGGAG	2 cut(s)	242, 604
BseXI	GCAGC	1 cut(s)	650
BshFI	GGCC	2 cut(s)	281, 505
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	2 cut(s)	91, 303
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	4 cut(s)	123, 462, 533, 686
BsmAI	GTCTC	4 cut(s)	61, 235, 503, 562
BsmFI	GGGAC	1 cut(s)	99
BsnI	GGCC	2 cut(s)	281, 505
Bso31I	GGTCTC	2 cut(s)	61, 503
BsoBI	CYCGRG	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	425
Bsp143I	GATC	7 cut(s)	155, 196, 261, 452, 545, 613, 649
Bsp19I	CCATGG	1 cut(s)	684
BspACI	CCGC	1 cut(s)	495
BspANI	GGCC	2 cut(s)	281, 505
BspCNI	CTCAG	1 cut(s)	631
BspLI	GGNNCC	3 cut(s)	115, 263, 615
BspPI	GGATC	7 cut(s)	191, 256, 269, 447, 553, 608, 621
BspTNI	GGTCTC	2 cut(s)	61, 503
BsrI	ACTGG	2 cut(s)	68, 128
BssECI	CCNNGG	6 cut(s)	225, 265, 301, 302, 378, 684
BssMI	GATC	7 cut(s)	155, 196, 261, 452, 545, 613, 649
BssT1I	CCWWGG	2 cut(s)	265, 684
Bst4CI	ACNGT	4 cut(s)	26, 113, 297, 415
Bst6I	CTCTTC	2 cut(s)	231, 379
BstDEI	CTNAG	2 cut(s)	618, 750
BstDSI	CCRYGG	2 cut(s)	378, 684
BstF5I	GGATG	1 cut(s)	680
BstKTI	GATC	7 cut(s)	158, 199, 264, 455, 548, 616, 652
BstMAI	GTCTC	4 cut(s)	61, 235, 503, 562
BstMBI	GATC	7 cut(s)	155, 196, 261, 452, 545, 613, 649
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstSCI	CCNGG	2 cut(s)	301, 302
BstSFI	CTRYAG	1 cut(s)	169
BstV1I	GCAGC	1 cut(s)	650
BstX2I	RGATCY	4 cut(s)	261, 452, 545, 613
BstYI	RGATCY	4 cut(s)	261, 452, 545, 613
BsuRI	GGCC	2 cut(s)	281, 505
BtgI	CCRYGG	2 cut(s)	378, 684
BtsCI	GGATG	1 cut(s)	680
BtsIMutI	CAGTG	1 cut(s)	61
Cfr13I	GGNCC	4 cut(s)	113, 279, 309, 677
Cfr9I	CCCGGG	1 cut(s)	302
CseI	GACGC	1 cut(s)	363
Csp6I	GTAC	2 cut(s)	184, 566
CviAII	CATG	4 cut(s)	338, 346, 635, 685
CviQI	GTAC	2 cut(s)	184, 566
DdeI	CTNAG	2 cut(s)	618, 750
DpnI	GATC	7 cut(s)	157, 198, 263, 454, 547, 615, 651
DpnII	GATC	7 cut(s)	155, 196, 261, 452, 545, 613, 649
DrdI	GACNNNNNNGTC	1 cut(s)	320
DseDI	GACNNNNNNGTC	1 cut(s)	320
Eam1104I	CTCTTC	2 cut(s)	231, 379
EarI	CTCTTC	2 cut(s)	231, 379
Eco130I	CCWWGG	2 cut(s)	265, 684
Eco24I	GRGCYC	1 cut(s)	425
Eco31I	GGTCTC	2 cut(s)	61, 503
Eco47I	GGWCC	3 cut(s)	113, 309, 677
Eco88I	CYCGRG	1 cut(s)	302
EcoT14I	CCWWGG	2 cut(s)	265, 684
EcoT38I	GRGCYC	1 cut(s)	425
ErhI	CCWWGG	2 cut(s)	265, 684
FaeI	CATG	4 cut(s)	341, 349, 638, 688
FaiI	YATR	9 cut(s)	150, 287, 339, 347, 411, 469, 636, 654, 686
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	4 cut(s)	337, 345, 634, 684
Fnu4HI	GCNGC	1 cut(s)	639
FokI	GGATG	1 cut(s)	667
FriOI	GRGCYC	1 cut(s)	425
Fsp4HI	GCNGC	1 cut(s)	639
FspBI	CTAG	5 cut(s)	12, 45, 351, 426, 432
GluI	GCNGC	1 cut(s)	639
GsuI	CTGGAG	1 cut(s)	85
HaeIII	GGCC	2 cut(s)	281, 505
HapII	CCGG	2 cut(s)	91, 303
HgaI	GACGC	1 cut(s)	363
Hin1II	CATG	4 cut(s)	341, 349, 638, 688
HinfI	GANTC	1 cut(s)	271
HpaII	CCGG	2 cut(s)	91, 303
HphI	GGTGA	4 cut(s)	199, 214, 513, 710
Hpy166II	GTNNAC	1 cut(s)	568
Hpy188I	TCNGA	2 cut(s)	261, 621
Hpy188III	TCNNGA	2 cut(s)	12, 584
Hpy8I	GTNNAC	1 cut(s)	568
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	4 cut(s)	26, 113, 297, 415
HpyCH4IV	ACGT	2 cut(s)	392, 564
HpyCH4V	TGCA	1 cut(s)	638
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	2 cut(s)	618, 750
HpySE526I	ACGT	2 cut(s)	392, 564
Hsp92II	CATG	4 cut(s)	341, 349, 638, 688
Kzo9I	GATC	7 cut(s)	155, 196, 261, 452, 545, 613, 649
LpnPI	CCDG	8 cut(s)	49, 84, 104, 109, 144, 316, 487, 660
Lsp1109I	GCAGC	1 cut(s)	650
MaeI	CTAG	5 cut(s)	12, 45, 351, 426, 432
MaeII	ACGT	2 cut(s)	392, 564
MaeIII	GTNAC	2 cut(s)	59, 712
MalI	GATC	7 cut(s)	157, 198, 263, 454, 547, 615, 651
MboI	GATC	7 cut(s)	155, 196, 261, 452, 545, 613, 649
MboII	GAAGA	8 cut(s)	89, 165, 245, 248, 366, 540, 683, 715
MflI	RGATCY	4 cut(s)	261, 452, 545, 613
MhlI	GDGCHC	1 cut(s)	425
MluCI	AATT	4 cut(s)	127, 539, 576, 622
MmeI	TCCRAC	1 cut(s)	718
MnlI	CCTC	9 cut(s)	8, 50, 220, 223, 292, 300, 465, 582, 627
MroXI	GAANNNNTTC	1 cut(s)	218
MseI	TTAA	2 cut(s)	176, 249
MslI	CAYNNNNRTG	2 cut(s)	147, 336
MspI	CCGG	2 cut(s)	91, 303
MspR9I	CCNGG	2 cut(s)	303, 304
MwoI	GCNNNNNNNGC	1 cut(s)	287
NciI	CCSGG	2 cut(s)	303, 304
NcoI	CCATGG	1 cut(s)	684
NdeII	GATC	7 cut(s)	155, 196, 261, 452, 545, 613, 649
NlaIII	CATG	4 cut(s)	341, 349, 638, 688
NlaIV	GGNNCC	3 cut(s)	115, 263, 615
NmuCI	GTSAC	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	1 cut(s)	570
PdmI	GAANNNNTTC	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	271
PflMI	CCANNNNNTGG	1 cut(s)	123
PkrI	GCNGC	1 cut(s)	640
PspN4I	GGNNCC	3 cut(s)	115, 263, 615
PspPI	GGNCC	4 cut(s)	113, 279, 309, 677
PsuI	RGATCY	4 cut(s)	261, 452, 545, 613
RsaI	GTAC	2 cut(s)	185, 567
RsaNI	GTAC	2 cut(s)	184, 566
RseI	CAYNNNNRTG	2 cut(s)	147, 336
SaqAI	TTAA	2 cut(s)	176, 249
SatI	GCNGC	1 cut(s)	639
Sau3AI	GATC	7 cut(s)	155, 196, 261, 452, 545, 613, 649
Sau96I	GGNCC	4 cut(s)	113, 279, 309, 677
ScrFI	CCNGG	2 cut(s)	303, 304
SduI	GDGCHC	1 cut(s)	425
SetI	ASST	9 cut(s)	61, 73, 170, 256, 395, 476, 529, 567, 748
SfcI	CTRYAG	1 cut(s)	169
SinI	GGWCC	3 cut(s)	113, 309, 677
SmaI	CCCGGG	1 cut(s)	304
SmiMI	CAYNNNNRTG	2 cut(s)	147, 336
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	4 cut(s)	127, 539, 576, 622
SsiI	CCGC	1 cut(s)	495
SspMI	CTAG	5 cut(s)	12, 45, 351, 426, 432
StyD4I	CCNGG	2 cut(s)	301, 302
StyI	CCWWGG	2 cut(s)	265, 684
TaaI	ACNGT	4 cut(s)	26, 113, 297, 415
TaiI	ACGT	2 cut(s)	395, 567
TaqI	TCGA	2 cut(s)	478, 599
TaqII	GACCGA	1 cut(s)	326
TasI	AATT	4 cut(s)	127, 539, 576, 622
TfiI	GAWTC	1 cut(s)	271
Tru1I	TTAA	2 cut(s)	176, 249
Tru9I	TTAA	2 cut(s)	176, 249
TscAI	CASTG	1 cut(s)	68
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	1 cut(s)	638
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	5 cut(s)	326, 540, 623, 684, 709
TspMI	CCCGGG	1 cut(s)	302
TspRI	CASTG	1 cut(s)	68
Van91I	CCANNNNNTGG	1 cut(s)	123
VpaK11BI	GGWCC	3 cut(s)	113, 309, 677
XapI	RAATTY	2 cut(s)	127, 576
XbaI	TCTAGA	1 cut(s)	11
XmaI	CCCGGG	1 cut(s)	302
XmnI	GAANNNNTTC	1 cut(s)	218
XspI	CTAG	5 cut(s)	12, 45, 351, 426, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.