Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

16521861 .. 16523230

Gene Structure 1370 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G34590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGAATCGTCGTCGTCGGGAACAACTTCGTCGACGATTCAAACGTCGTCAGGATCGGAGGAGAGTCTCATGGAGCAGAGGAAACGTAAACGGATGCTCTCAAACCGTGAATCTGCAAGGAGATCAAGAATGAAGAAACAAAAGCTCCTAGACGATCTAACGGCTCAGGTTAATCATCTGAAAAAAGAGAACACGGAGATCGTGACAAGTGTCAGCATCACAACGCAACACTACCTAACCGTTGAAGCAGAGAACTCTGTTCTCAGAGCTCAGCTTGATGAACTTAACCACAGGCTCCAATCTCTCAACGACATCATCGAGTTCCTCGACAGTAGCAACAACAACAACAACAACAACATGGGCATGTGTTCGAACCCTCTGGTTGGTTTGGAGTGTGATGATTTCTTCGTGAATCAGATGAACATGTCTTATATTATGAACCAGCCTCTCATGGCGTCTTCTGATGCTTTAATGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0007275 GO:0008150 GO:0009743 GO:0009744 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032055 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033554 GO:0034248 GO:0034249 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043555 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0080149 GO:0090351 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

159

Amino Acids

18.04

Weight (kDa)

5.38

Isoelectric Point (pI)

58.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	25 - 67	2.1e-06	Basic region leucine zipper
bZIP_1	PF00170	26 - 67	2.5e-09	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	32
AclWI	GGATC	1 cut(s)	61
AcyI	GRCGYC	1 cut(s)	455
AfiI	CCNNNNNNNGG	1 cut(s)	383
AflIII	ACRYGT	1 cut(s)	423
AgsI	TTSAA	2 cut(s)	41, 245
AluBI	AGCT	3 cut(s)	145, 269, 274
AluI	AGCT	3 cut(s)	145, 269, 274
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	1 cut(s)	61
Asp700I	GAANNNNTTC	1 cut(s)	25
AsuII	TTCGAA	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	450
Bbv12I	GWGCWC	1 cut(s)	271
BceAI	ACGGC	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	1 cut(s)	149
BlpI	GCTNAGC	1 cut(s)	270
BmiI	GGNNCC	1 cut(s)	296
BmsI	GCATC	3 cut(s)	84, 225, 454
BoxI	GACNNNNGTC	1 cut(s)	209
BpiI	GAAGAC	1 cut(s)	450
Bpu10I	CCTNAGC	1 cut(s)	165
Bpu1102I	GCTNAGC	1 cut(s)	270
Bpu14I	TTCGAA	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	455
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
BseGI	GGATG	1 cut(s)	99
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMII	CTCAG	3 cut(s)	179, 277, 284
BseRI	GAGGAG	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	271
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	1 cut(s)	71
Bsp119I	TTCGAA	1 cut(s)	371
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	4 cut(s)	53, 122, 154, 198
Bsp1720I	GCTNAGC	1 cut(s)	270
BspCNI	CTCAG	3 cut(s)	178, 276, 283
BspLI	GGNNCC	1 cut(s)	296
BspPI	GGATC	1 cut(s)	61
BspT104I	TTCGAA	1 cut(s)	371
BssMI	GATC	4 cut(s)	53, 122, 154, 198
BssNI	GRCGYC	1 cut(s)	455
Bst4CI	ACNGT	3 cut(s)	107, 241, 332
BstACI	GRCGYC	1 cut(s)	455
BstBI	TTCGAA	1 cut(s)	371
BstDEI	CTNAG	3 cut(s)	165, 263, 270
BstF5I	GGATG	1 cut(s)	99
BstKTI	GATC	4 cut(s)	56, 125, 157, 201
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	4 cut(s)	53, 122, 154, 198
BstNSI	RCATGY	2 cut(s)	367, 427
BstPAI	GACNNNNGTC	1 cut(s)	209
BstV2I	GAAGAC	1 cut(s)	450
BtsCI	GGATG	1 cut(s)	99
CseI	GACGC	1 cut(s)	444
CviAII	CATG	5 cut(s)	70, 358, 364, 424, 451
CviJI	RGCY	6 cut(s)	145, 164, 269, 274, 295, 445
CviKI_1	RGCY	6 cut(s)	145, 164, 269, 274, 295, 445
DdeI	CTNAG	3 cut(s)	165, 263, 270
DpnI	GATC	4 cut(s)	55, 124, 156, 200
DpnII	GATC	4 cut(s)	53, 122, 154, 198
Ecl136II	GAGCTC	1 cut(s)	269
Eco24I	GRGCYC	1 cut(s)	271
Eco53kI	GAGCTC	1 cut(s)	269
EcoICRI	GAGCTC	1 cut(s)	269
EcoT38I	GRGCYC	1 cut(s)	271
FaeI	CATG	5 cut(s)	73, 361, 367, 427, 454
FaiI	YATR	7 cut(s)	71, 359, 365, 425, 432, 437, 452
FatI	CATG	5 cut(s)	69, 357, 363, 423, 450
FblI	GTMKAC	1 cut(s)	32
FokI	GGATG	1 cut(s)	106
FriOI	GRGCYC	1 cut(s)	271
FspBI	CTAG	1 cut(s)	149
HgaI	GACGC	1 cut(s)	444
Hin1I	GRCGYC	1 cut(s)	455
Hin1II	CATG	5 cut(s)	73, 361, 367, 427, 454
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	5 cut(s)	5, 37, 64, 110, 412
Hpy166II	GTNNAC	2 cut(s)	33, 89
Hpy188I	TCNGA	5 cut(s)	58, 180, 266, 417, 463
Hpy188III	TCNNGA	5 cut(s)	18, 51, 126, 202, 409
Hpy8I	GTNNAC	2 cut(s)	33, 89
Hpy99I	CGWCG	6 cut(s)	13, 16, 19, 34, 37, 49
HpyCH4III	ACNGT	3 cut(s)	107, 241, 332
HpyCH4IV	ACGT	2 cut(s)	44, 85
HpyCH4V	TGCA	1 cut(s)	116
HpyF3I	CTNAG	3 cut(s)	165, 263, 270
HpySE526I	ACGT	2 cut(s)	44, 85
Hsp92I	GRCGYC	1 cut(s)	455
Hsp92II	CATG	5 cut(s)	73, 361, 367, 427, 454
Kzo9I	GATC	4 cut(s)	53, 122, 154, 198
LmnI	GCTCC	3 cut(s)	73, 150, 300
LpnPI	CCDG	5 cut(s)	36, 152, 277, 365, 455
LweI	GCATC	3 cut(s)	84, 225, 454
MaeI	CTAG	1 cut(s)	149
MaeII	ACGT	2 cut(s)	44, 85
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	4 cut(s)	55, 124, 156, 200
MboI	GATC	4 cut(s)	53, 122, 154, 198
MboII	GAAGA	3 cut(s)	145, 397, 450
MhlI	GDGCHC	1 cut(s)	271
MlyI	GAGTC	1 cut(s)	73
MnlI	CCTC	5 cut(s)	52, 72, 335, 387, 456
MroXI	GAANNNNTTC	1 cut(s)	25
MseI	TTAA	4 cut(s)	171, 285, 470, 478
MslI	CAYNNNNRTG	1 cut(s)	362
NdeII	GATC	4 cut(s)	53, 122, 154, 198
NlaIII	CATG	5 cut(s)	73, 361, 367, 427, 454
NlaIV	GGNNCC	1 cut(s)	296
NmuCI	GTSAC	1 cut(s)	202
NspI	RCATGY	2 cut(s)	367, 427
NspV	TTCGAA	1 cut(s)	371
PciI	ACATGT	1 cut(s)	423
PcsI	WCGNNNNNNNCGW	3 cut(s)	41, 315, 324
PdmI	GAANNNNTTC	1 cut(s)	25
PfeI	GAWTC	4 cut(s)	5, 37, 110, 412
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
PscI	ACATGT	1 cut(s)	423
PshAI	GACNNNNGTC	1 cut(s)	209
Psp124BI	GAGCTC	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	296
RseI	CAYNNNNRTG	1 cut(s)	362
SacI	GAGCTC	1 cut(s)	271
SalI	GTCGAC	1 cut(s)	31
SaqAI	TTAA	4 cut(s)	171, 285, 470, 478
Sau3AI	GATC	4 cut(s)	53, 122, 154, 198
SchI	GAGTC	1 cut(s)	73
SduI	GDGCHC	1 cut(s)	271
SetI	ASST	7 cut(s)	47, 88, 147, 171, 237, 271, 276
SfaNI	GCATC	3 cut(s)	84, 225, 454
SfuI	TTCGAA	1 cut(s)	371
SgrDI	CGTCGACG	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	362
SspMI	CTAG	1 cut(s)	149
SstI	GAGCTC	1 cut(s)	271
TaaI	ACNGT	3 cut(s)	107, 241, 332
TaiI	ACGT	2 cut(s)	47, 88
TaqI	TCGA	4 cut(s)	32, 318, 327, 371
TfiI	GAWTC	4 cut(s)	5, 37, 110, 412
Tru1I	TTAA	4 cut(s)	171, 285, 470, 478
Tru9I	TTAA	4 cut(s)	171, 285, 470, 478
TseFI	GTSAC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	4 cut(s)	146, 294, 434, 452
TspGWI	ACGGA	2 cut(s)	106, 209
XceI	RCATGY	2 cut(s)	367, 427
XmiI	GTMKAC	1 cut(s)	32
XmnI	GAANNNNTTC	1 cut(s)	25
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.