Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

17388649 .. 17389862

Gene Structure 1214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G36900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGAGACGGCGACTGAAGTGGCCACGGTGGTGTCAACTCCGGCGGTTACGGTTGCGGCGGTGGCGACGAGGAAGAGAGATAAGCCGTATAAAGGGATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCGGAGATAAGAGAGCCTAATAAAAGGTCAAGGATCTGGCTTGGCTCTTACTCTACTCCTGAAGCGGCGGCGCGTGCTTACGACACGGCGGTGTTTTATCTCCGAGGTCCTTCTGCTCGGCTTAACTTCCCGGAGCTTTTAGCCGGAGTGACGGTGACGGGAGGAGGCGGAGGAGGAGTGAACGGTGGTGGAGATATGTCGGCGGCGTATATAAGGAGAAAAGCGGCGGAGGTTGGAGCACAAGTGGATGCGTTAGAAGCGGCGGGGGCGGGAGGGAATCGTCATCATCATCATCATCAACATCAACGTGGTAATCATGATTACGTAGATAATCATAGTGATTATCGTATTAATGATGATCTTATGGAGTGTAGTAGTAAAGAAGGGTTTAAGAGGTGTAATGGATCGTTGGAACGGGTTGATTTAAACAAATTACCCGATCCGGAAACTTCAGATGACGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010941 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

196

Amino Acids

21.36

Weight (kDa)

7.84

Isoelectric Point (pI)

32.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	30 - 78	4.4e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	199
AccIII	TCCGGA	1 cut(s)	568
AclWI	GGATC	3 cut(s)	167, 538, 560
AcoI	YGGCCR	1 cut(s)	21
AcuI	CTGAAG	3 cut(s)	36, 207, 561
AfiI	CCNNNNNNNGG	1 cut(s)	92
AleI	CACNNNNGTG	2 cut(s)	29, 215
AluBI	AGCT	1 cut(s)	262
AluI	AGCT	1 cut(s)	262
Alw21I	GWGCWC	1 cut(s)	367
AlwI	GGATC	3 cut(s)	167, 538, 560
Aor13HI	TCCGGA	1 cut(s)	568
AoxI	GGCC	1 cut(s)	21
AseI	ATTAAT	1 cut(s)	477
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	1 cut(s)	233
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	292
AvaII	GGWCC	1 cut(s)	233
BalI	TGGCCA	1 cut(s)	23
Bbv12I	GWGCWC	1 cut(s)	367
BceAI	ACGGC	3 cut(s)	24, 70, 228
BcnI	CCSGG	1 cut(s)	257
BisI	GCNGC	6 cut(s)	57, 192, 195, 330, 351, 387
BlsI	GCNGC	6 cut(s)	58, 193, 196, 331, 352, 388
Bme1390I	CCNGG	1 cut(s)	257
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmrFI	CCNGG	1 cut(s)	257
BmsI	GCATC	1 cut(s)	364
BpuMI	CCSGG	1 cut(s)	257
BsaAI	YACGTR	1 cut(s)	451
BsaJI	CCNNGG	2 cut(s)	24, 229
BsaWI	WCCGGW	1 cut(s)	568
BsaXI	ACNNNNNCTCC	6 cut(s)	264, 288, 294, 318, 354, 384
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
BseAI	TCCGGA	1 cut(s)	568
BseDI	CCNNGG	2 cut(s)	24, 229
BseGI	GGATG	2 cut(s)	108, 379
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseRI	GAGGAG	3 cut(s)	303, 312, 315
Bsh1236I	CGCG	1 cut(s)	199
BshFI	GGCC	1 cut(s)	23
BsiHKAI	GWGCWC	1 cut(s)	367
BsiSI	CCGG	4 cut(s)	41, 257, 270, 569
BslI	CCNNNNNNNGG	1 cut(s)	92
BsnI	GGCC	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp13I	TCCGGA	1 cut(s)	568
Bsp143I	GATC	4 cut(s)	159, 484, 530, 565
BspANI	GGCC	1 cut(s)	23
BspEI	TCCGGA	1 cut(s)	568
BspFNI	CGCG	1 cut(s)	199
BspHI	TCATGA	1 cut(s)	442
BspPI	GGATC	3 cut(s)	167, 538, 560
BssECI	CCNNGG	2 cut(s)	24, 229
BssMI	GATC	4 cut(s)	159, 484, 530, 565
Bst4CI	ACNGT	4 cut(s)	28, 52, 280, 311
Bst6I	CTCTTC	1 cut(s)	68
BstBAI	YACGTR	1 cut(s)	451
BstC8I	GCNNGC	1 cut(s)	201
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	2 cut(s)	108, 379
BstFNI	CGCG	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	4 cut(s)	162, 487, 533, 568
BstMBI	GATC	4 cut(s)	159, 484, 530, 565
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 200, 383, 392
BstSCI	CCNGG	1 cut(s)	255
BstSNI	TACGTA	1 cut(s)	451
BstUI	CGCG	1 cut(s)	199
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	23
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	108, 379
Cac8I	GCNNGC	1 cut(s)	201
CciI	TCATGA	1 cut(s)	442
CfoI	GCGC	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	233
CviAII	CATG	1 cut(s)	443
CviJI	RGCY	8 cut(s)	23, 85, 142, 166, 171, 247, 262, 269
CviKI_1	RGCY	8 cut(s)	23, 85, 142, 166, 171, 247, 262, 269
DpnI	GATC	4 cut(s)	161, 486, 532, 567
DpnII	GATC	4 cut(s)	159, 484, 530, 565
DraI	TTTAAA	1 cut(s)	552
EaeI	YGGCCR	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
EciI	GGCGGA	3 cut(s)	143, 309, 368
Eco105I	TACGTA	1 cut(s)	451
Eco47I	GGWCC	1 cut(s)	233
Eco57I	CTGAAG	3 cut(s)	36, 207, 561
EcoO109I	RGGNCCY	1 cut(s)	233
FaeI	CATG	1 cut(s)	446
FaiI	YATR	7 cut(s)	90, 323, 336, 338, 444, 462, 491
FatI	CATG	1 cut(s)	442
FauI	CCCGC	2 cut(s)	382, 388
Fnu4HI	GCNGC	6 cut(s)	57, 192, 195, 330, 351, 387
FokI	GGATG	2 cut(s)	115, 386
Fsp4HI	GCNGC	6 cut(s)	57, 192, 195, 330, 351, 387
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	6 cut(s)	57, 192, 195, 330, 351, 387
HaeIII	GGCC	1 cut(s)	23
HapII	CCGG	4 cut(s)	41, 257, 270, 569
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	1 cut(s)	446
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HinfI	GANTC	1 cut(s)	403
HpaII	CCGG	4 cut(s)	41, 257, 270, 569
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	2 cut(s)	36, 307
Hpy188I	TCNGA	2 cut(s)	230, 580
Hpy188III	TCNNGA	3 cut(s)	185, 443, 569
Hpy8I	GTNNAC	2 cut(s)	36, 307
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	2 cut(s)	246, 503
HpyCH4III	ACNGT	4 cut(s)	28, 52, 280, 311
HpyCH4IV	ACGT	2 cut(s)	433, 450
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 200, 383, 392
HpySE526I	ACGT	2 cut(s)	433, 450
Hsp92II	CATG	1 cut(s)	446
HspAI	GCGC	1 cut(s)	197
Kpn2I	TCCGGA	1 cut(s)	568
Kzo9I	GATC	4 cut(s)	159, 484, 530, 565
LmnI	GCTCC	2 cut(s)	259, 362
LpnPI	CCDG	6 cut(s)	54, 148, 198, 270, 283, 582
LweI	GCATC	1 cut(s)	364
MaeII	ACGT	2 cut(s)	433, 450
MaeIII	GTNAC	3 cut(s)	46, 274, 280
MalI	GATC	4 cut(s)	161, 486, 532, 567
MboI	GATC	4 cut(s)	159, 484, 530, 565
MboII	GAAGA	1 cut(s)	85
MflI	RGATCY	1 cut(s)	159
MhlI	GDGCHC	1 cut(s)	367
MlsI	TGGCCA	1 cut(s)	23
MluCI	AATT	1 cut(s)	557
MluNI	TGGCCA	1 cut(s)	23
MmeI	TCCRAC	2 cut(s)	340, 516
Mox20I	TGGCCA	1 cut(s)	23
MroI	TCCGGA	1 cut(s)	568
MscI	TGGCCA	1 cut(s)	23
MseI	TTAA	4 cut(s)	249, 477, 516, 551
MslI	CAYNNNNRTG	3 cut(s)	29, 215, 432
Msp20I	TGGCCA	1 cut(s)	23
MspI	CCGG	4 cut(s)	41, 257, 270, 569
MspR9I	CCNGG	1 cut(s)	257
MvnI	CGCG	1 cut(s)	199
MwoI	GCNNNNNNNGC	4 cut(s)	62, 200, 383, 392
NciI	CCSGG	1 cut(s)	257
NdeII	GATC	4 cut(s)	159, 484, 530, 565
NlaIII	CATG	1 cut(s)	446
NmeAIII	GCCGAG	1 cut(s)	223
NmuCI	GTSAC	2 cut(s)	274, 280
OliI	CACNNNNGTG	2 cut(s)	29, 215
PagI	TCATGA	1 cut(s)	442
PfeI	GAWTC	1 cut(s)	403
PfoI	TCCNGGA	1 cut(s)	255
PkrI	GCNGC	6 cut(s)	58, 193, 196, 331, 352, 388
Ppu21I	YACGTR	1 cut(s)	451
PpuMI	RGGWCCY	1 cut(s)	233
PshBI	ATTAAT	1 cut(s)	477
Psp5II	RGGWCCY	1 cut(s)	233
PspPI	GGNCC	1 cut(s)	233
PspPPI	RGGWCCY	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	159
RseI	CAYNNNNRTG	3 cut(s)	29, 215, 432
SaqAI	TTAA	4 cut(s)	249, 477, 516, 551
SatI	GCNGC	6 cut(s)	57, 192, 195, 330, 351, 387
Sau3AI	GATC	4 cut(s)	159, 484, 530, 565
Sau96I	GGNCC	1 cut(s)	233
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	1 cut(s)	367
SetI	ASST	7 cut(s)	155, 235, 264, 360, 436, 453, 524
SfaNI	GCATC	1 cut(s)	364
SinI	GGWCC	1 cut(s)	233
SmiMI	CAYNNNNRTG	3 cut(s)	29, 215, 432
SnaBI	TACGTA	1 cut(s)	451
Sse9I	AATT	1 cut(s)	557
StyD4I	CCNGG	1 cut(s)	255
TaaI	ACNGT	4 cut(s)	28, 52, 280, 311
TaiI	ACGT	2 cut(s)	436, 453
TasI	AATT	1 cut(s)	557
TauI	GCSGC	6 cut(s)	59, 194, 197, 332, 353, 389
TfiI	GAWTC	1 cut(s)	403
Tru1I	TTAA	4 cut(s)	249, 477, 516, 551
Tru9I	TTAA	4 cut(s)	249, 477, 516, 551
TseFI	GTSAC	2 cut(s)	274, 280
Tsp45I	GTSAC	2 cut(s)	274, 280
VpaK11BI	GGWCC	1 cut(s)	233
VspI	ATTAAT	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.