Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

18271198 .. 18272129

Gene Structure 932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G39250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGCATCAAGCTCAATGTCTTCTCAGAGCTCTGGCTCGTGGACTGCTAAGCAGAACAAAGCCTTTGAGCAGGCTCTAGCAACCTATGACCAGGACACTCCTAACCGTTGGCAAAATGTTGCCAAAGTCGTGGGTGGAAAAACAACAGAGGAGGTAAAGAGACACTACGAACTCTTAGTGCAAGACATCAACAGCATAGAGAACGGTCATGTTCCATTCCCAAACTACAGGACTAGTGGAGGCTGCACTAATGGCAGGCTTAGTCAGGAGGAAAAAAGGATGAGAAACATGAGGCTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0010114 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0061649 GO:0065007 GO:0080090 GO:0140030 GO:0140035 GO:0140036 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

100

Amino Acids

11.3

Weight (kDa)

9.25

Isoelectric Point (pI)

79.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	12 - 56	7.2e-08	Myb-like DNA-binding domain
Myb_DNA-binding_2	PF23082	13 - 59	1.2e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AhlI	ACTAGT	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	90
AluBI	AGCT	2 cut(s)	12, 30
AluI	AGCT	2 cut(s)	12, 30
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	1 cut(s)	154
ApeKI	GCWGC	2 cut(s)	243, 295
BanII	GRGCYC	1 cut(s)	32
BauI	CACGAG	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	230, 282
BciT130I	CCWGG	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	154
BcuI	ACTAGT	1 cut(s)	233
BfaI	CTAG	2 cut(s)	77, 234
BfmI	CTRYAG	2 cut(s)	226, 296
BisI	GCNGC	2 cut(s)	244, 296
BlpI	GCTNAGC	1 cut(s)	48
BlsI	GCNGC	2 cut(s)	245, 297
Bme1390I	CCNGG	1 cut(s)	92
BmrFI	CCNGG	1 cut(s)	92
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	12
Bpu1102I	GCTNAGC	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	92
BseGI	GGATG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	38
BseRI	GAGGAG	1 cut(s)	164
BseXI	GCAGC	2 cut(s)	230, 282
BsgI	GTGCAG	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	154
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp1720I	GCTNAGC	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	37
BspMAI	CTGCAG	1 cut(s)	300
BssSI	CACGAG	1 cut(s)	37
Bst2BI	CACGAG	1 cut(s)	37
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	2 cut(s)	107, 206
BstC8I	GCNNGC	2 cut(s)	72, 257
BstDEI	CTNAG	4 cut(s)	24, 48, 175, 260
BstF5I	GGATG	1 cut(s)	285
BstMAI	GTCTC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	1 cut(s)	252
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	90
BstSFI	CTRYAG	2 cut(s)	226, 296
BstV1I	GCAGC	2 cut(s)	230, 282
BstV2I	GAAGAC	1 cut(s)	12
BstXI	CCANNNNNNTGG	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	285
Cac8I	GCNNGC	2 cut(s)	72, 257
CviAII	CATG	2 cut(s)	209, 289
CviJI	RGCY	8 cut(s)	12, 30, 36, 62, 74, 243, 259, 295
CviKI_1	RGCY	8 cut(s)	12, 30, 36, 62, 74, 243, 259, 295
DdeI	CTNAG	4 cut(s)	24, 48, 175, 260
Ecl136II	GAGCTC	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	32
Eco53kI	GAGCTC	1 cut(s)	30
EcoICRI	GAGCTC	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	32
FaeI	CATG	2 cut(s)	212, 292
FaiI	YATR	4 cut(s)	87, 197, 210, 290
FatI	CATG	2 cut(s)	208, 288
Fnu4HI	GCNGC	2 cut(s)	244, 296
FokI	GGATG	1 cut(s)	292
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	2 cut(s)	244, 296
FspBI	CTAG	2 cut(s)	77, 234
GluI	GCNGC	2 cut(s)	244, 296
Hin1II	CATG	2 cut(s)	212, 292
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	1 cut(s)	42
HpyCH4III	ACNGT	2 cut(s)	107, 206
HpyCH4V	TGCA	3 cut(s)	181, 246, 298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	252
HpyF3I	CTNAG	4 cut(s)	24, 48, 175, 260
Hsp92II	CATG	2 cut(s)	212, 292
LpnPI	CCDG	7 cut(s)	18, 56, 77, 104, 214, 241, 251
Lsp1109I	GCAGC	2 cut(s)	230, 282
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	2 cut(s)	77, 234
MboII	GAAGA	1 cut(s)	12
MhlI	GDGCHC	1 cut(s)	32
MnlI	CCTC	5 cut(s)	142, 145, 233, 262, 285
MspR9I	CCNGG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	1 cut(s)	252
NlaIII	CATG	2 cut(s)	212, 292
PkrI	GCNGC	2 cut(s)	245, 297
Psp124BI	GAGCTC	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PstI	CTGCAG	1 cut(s)	300
SacI	GAGCTC	1 cut(s)	32
SatI	GCNGC	2 cut(s)	244, 296
ScrFI	CCNGG	1 cut(s)	92
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	4 cut(s)	14, 32, 86, 156
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	2 cut(s)	226, 296
SpeI	ACTAGT	1 cut(s)	233
SspMI	CTAG	2 cut(s)	77, 234
SstI	GAGCTC	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	90
TaaI	ACNGT	2 cut(s)	107, 206
TseI	GCWGC	2 cut(s)	243, 295
XspI	CTAG	2 cut(s)	77, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.