AT5G01200
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
N/A
Physical Location & Seq
Forward (+)
76872 .. 78543
1672 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G01200.1

Sequence Viewer

Length: 804 bp
ATGTCATCGTCGACGATGTACAGAGGAGTTAATATGTTTTCACCGGCAAACACAAACTGGATTTTTCAAGAAGTCAGAGAAGCCACGTGGACGGCGGAGGAGAACAAACGGTTCGAGAAAGCTCTCGCTTATCTGGACGACAAAGACAATCTTGAGAGCTGGTCCAAGATCGCAGATTTGATTCCCGGCAAAACAGTAGCTGACGTCATTAAACGATACAAGGAGCTAGAGGATGATGTCAGCGACATCGAAGCCGGACTTATCCCCATTCCGGGATACGGCGGCGACGCCTCCTCCGCTGCAAACAGTGACTATTTCTTTGGTCTAGAAAACTCCAGCTACGGTTATGATTACGTCGTTGGAGGAAAGAGGAGTTCGCCGGCGATGACTGATTGTTTTAGGTCTCCGATGCCGGAAAAGGAGAGGAAGAAAGGAGTTCCGTGGACCGAGGACGAACACCTACGATTTCTGATGGGTTTGAAGAAATATGGAAAAGGAGATTGGAGAAACATAGCAAAAAGCTTTGTGACGACTCGAACGCCGACGCAAGTCGCTTCACACGCTCAGAAATATTTTCTTCGACAACTCACAGATGGTAAAGACAAAAGACGATCAAGTATTCACGATATCACCACTGTTAACATCCCTGACGCAGACGCATCCGCAACCGCCACGACCGCTGACGTAGCACTCTCTCCTACTCCAGCCAATTCTTTTGACGTTTTCCTTCAGCCAAATCCTCATTACAGTTTCGCGTCTGCGTCTGCGTCTAGCTATTATAATGCGTTTCCGCAGTGGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

267

Amino Acids

29.84

Weight (kDa)

5.66

Isoelectric Point (pI)

49.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 29 - 75 4.5e-08 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 146 - 192 7.6e-13 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 780
AatII GACGTC 1 cut(s) 207
AccI GTMKAC 1 cut(s) 11
AccII CGCG 1 cut(s) 755
AciI CCGC 7 cut(s) 95, 282, 297, 663, 669, 678, 791
AcuI CTGAAG 1 cut(s) 713
AcvI CACGTG 1 cut(s) 87
AcyI GRCGYC 2 cut(s) 204, 288
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 3 cut(s) 271, 272, 278
AgsI TTSAA 2 cut(s) 68, 481
AjuI GAANNNNNNNTTGG 2 cut(s) 484, 516
AluBI AGCT 7 cut(s) 122, 159, 200, 226, 339, 522, 774
AluI AGCT 7 cut(s) 122, 159, 200, 226, 339, 522, 774
Alw26I GTCTC 1 cut(s) 408
AlwNI CAGNNNCTG 1 cut(s) 200
ApeKI GCWGC 1 cut(s) 299
ArsI GACNNNNNNTTYG 2 cut(s) 302, 334
AspS9I GGNCC 2 cut(s) 162, 444
AsuC2I CCSGG 2 cut(s) 186, 273
AsuHPI GGTGA 2 cut(s) 33, 622
AvaII GGWCC 2 cut(s) 162, 444
BbrPI CACGTG 1 cut(s) 87
BbvI GCAGC 1 cut(s) 286
BccI CCATC 2 cut(s) 466, 587
BceAI ACGGC 2 cut(s) 108, 295
BciVI GTATCC 1 cut(s) 269
BcnI CCSGG 2 cut(s) 186, 273
BcoDI GTCTC 1 cut(s) 408
BfaI CTAG 3 cut(s) 227, 326, 771
BfuI GTATCC 1 cut(s) 269
BisI GCNGC 2 cut(s) 283, 300
BlsI GCNGC 2 cut(s) 284, 301
Bme1390I CCNGG 2 cut(s) 186, 273
Bme18I GGWCC 2 cut(s) 162, 444
BmgT120I GGNCC 2 cut(s) 162, 444
BmrFI CCNGG 2 cut(s) 186, 273
BmsI GCATC 2 cut(s) 399, 668
BoxI GACNNNNGTC 1 cut(s) 548
BpmI CTGGAG 2 cut(s) 319, 687
BpuEI CTTGAG 1 cut(s) 173
BpuMI CCSGG 2 cut(s) 186, 273
BsaAI YACGTR 1 cut(s) 87
BsaHI GRCGYC 2 cut(s) 204, 288
BsaI GGTCTC 1 cut(s) 408
BsaJI CCNNGG 2 cut(s) 440, 447
BsaXI ACNNNNNCTCC 2 cut(s) 278, 308
Bsc4I CCNNNNNNNGG 3 cut(s) 271, 272, 278
Bse118I RCCGGY 2 cut(s) 43, 379
Bse1I ACTGG 1 cut(s) 62
BseDI CCNNGG 2 cut(s) 440, 447
BseGI GGATG 3 cut(s) 238, 642, 659
BseLI CCNNNNNNNGG 3 cut(s) 271, 272, 278
BseMII CTCAG 1 cut(s) 578
BseNI ACTGG 1 cut(s) 62
BseRI GAGGAG 4 cut(s) 39, 113, 283, 385
BseXI GCAGC 1 cut(s) 286
Bsh1236I CGCG 1 cut(s) 755
Bsh1285I CGRYCG 1 cut(s) 678
BsiEI CGRYCG 1 cut(s) 678
BsiSI CCGG 6 cut(s) 44, 186, 255, 272, 380, 413
BslI CCNNNNNNNGG 3 cut(s) 271, 272, 278
BsmAI GTCTC 1 cut(s) 408
Bso31I GGTCTC 1 cut(s) 408
Bsp1407I TGTACA 1 cut(s) 18
Bsp143I GATC 2 cut(s) 168, 611
BspACI CCGC 7 cut(s) 95, 282, 297, 663, 669, 678, 791
BspCNI CTCAG 1 cut(s) 577
BspFNI CGCG 1 cut(s) 755
BspTNI GGTCTC 1 cut(s) 408
BsrFI RCCGGY 2 cut(s) 43, 379
BsrGI TGTACA 1 cut(s) 18
BsrI ACTGG 1 cut(s) 62
BssAI RCCGGY 2 cut(s) 43, 379
BssECI CCNNGG 2 cut(s) 440, 447
BssMI GATC 2 cut(s) 168, 611
BssNI GRCGYC 2 cut(s) 204, 288
Bst4CI ACNGT 6 cut(s) 111, 196, 308, 344, 637, 749
BstACI GRCGYC 2 cut(s) 204, 288
BstAUI TGTACA 1 cut(s) 18
BstBAI YACGTR 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 381
BstDEI CTNAG 1 cut(s) 564
BstDSI CCRYGG 1 cut(s) 440
BstF5I GGATG 3 cut(s) 238, 642, 659
BstFNI CGCG 1 cut(s) 755
BstKTI GATC 2 cut(s) 171, 614
BstMAI GTCTC 1 cut(s) 408
BstMBI GATC 2 cut(s) 168, 611
BstMCI CGRYCG 1 cut(s) 678
BstMWI GCNNNNNNNGC 4 cut(s) 296, 560, 677, 686
BstPAI GACNNNNGTC 1 cut(s) 548
BstSCI CCNGG 2 cut(s) 184, 271
BstUI CGCG 1 cut(s) 755
BstV1I GCAGC 1 cut(s) 286
BsuI GTATCC 1 cut(s) 269
BtgI CCRYGG 1 cut(s) 440
BtgZI GCGATG 1 cut(s) 398
BtsCI GGATG 3 cut(s) 238, 642, 659
BtsI GCAGTG 1 cut(s) 800
BtsIMutI CAGTG 3 cut(s) 313, 633, 800
Cac8I GCNNGC 1 cut(s) 381
CaiI CAGNNNCTG 1 cut(s) 200
Cfr10I RCCGGY 2 cut(s) 43, 379
Cfr13I GGNCC 2 cut(s) 162, 444
CseI GACGC 7 cut(s) 296, 553, 659, 665, 744, 750, 756
Csp6I GTAC 1 cut(s) 19
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 1 cut(s) 564
DpnI GATC 2 cut(s) 170, 613
DpnII GATC 2 cut(s) 168, 611
EciI GGCGGA 1 cut(s) 110
Eco31I GGTCTC 1 cut(s) 408
Eco32I GATATC 1 cut(s) 628
Eco47I GGWCC 2 cut(s) 162, 444
Eco57I CTGAAG 1 cut(s) 713
Eco72I CACGTG 1 cut(s) 87
EcoRV GATATC 1 cut(s) 628
FaiI YATR 5 cut(s) 35, 348, 489, 512, 780
FalI AAGNNNNNCTT 4 cut(s) 135, 167, 243, 275
FblI GTMKAC 1 cut(s) 11
Fnu4HI GCNGC 2 cut(s) 283, 300
FokI GGATG 3 cut(s) 245, 629, 646
Fsp4HI GCNGC 2 cut(s) 283, 300
FspBI CTAG 3 cut(s) 227, 326, 771
GluI GCNGC 2 cut(s) 283, 300
GsuI CTGGAG 2 cut(s) 319, 687
HapII CCGG 6 cut(s) 44, 186, 255, 272, 380, 413
HgaI GACGC 7 cut(s) 296, 553, 659, 665, 744, 750, 756
Hin1I GRCGYC 2 cut(s) 204, 288
HincII GTYRAC 2 cut(s) 12, 640
HindII GTYRAC 2 cut(s) 12, 640
HindIII AAGCTT 1 cut(s) 520
HinfI GANTC 2 cut(s) 181, 532
HpaI GTTAAC 1 cut(s) 640
HpaII CCGG 6 cut(s) 44, 186, 255, 272, 380, 413
HphI GGTGA 2 cut(s) 33, 622
Hpy166II GTNNAC 4 cut(s) 12, 90, 444, 640
Hpy188I TCNGA 4 cut(s) 77, 408, 471, 567
Hpy188III TCNNGA 6 cut(s) 68, 115, 134, 152, 326, 623
Hpy8I GTNNAC 4 cut(s) 12, 90, 444, 640
Hpy99I CGWCG 5 cut(s) 13, 16, 290, 359, 547
HpyAV CCTTC 1 cut(s) 737
HpyCH4III ACNGT 6 cut(s) 111, 196, 308, 344, 637, 749
HpyCH4IV ACGT 5 cut(s) 86, 204, 354, 684, 720
HpyCH4V TGCA 1 cut(s) 302
HpyF10VI GCNNNNNNNGC 4 cut(s) 296, 560, 677, 686
HpyF3I CTNAG 1 cut(s) 564
HpySE526I ACGT 5 cut(s) 86, 204, 354, 684, 720
Hsp92I GRCGYC 2 cut(s) 204, 288
KroI GCCGGC 1 cut(s) 379
KroNI GCCGGC 1 cut(s) 381
KspAI GTTAAC 1 cut(s) 640
Kzo9I GATC 2 cut(s) 168, 611
LmnI GCTCC 1 cut(s) 223
Lsp1109I GCAGC 1 cut(s) 286
LweI GCATC 2 cut(s) 399, 668
MaeI CTAG 3 cut(s) 227, 326, 771
MaeII ACGT 5 cut(s) 86, 204, 354, 684, 720
MaeIII GTNAC 2 cut(s) 308, 526
MalI GATC 2 cut(s) 170, 613
MboI GATC 2 cut(s) 168, 611
MboII GAAGA 3 cut(s) 439, 493, 569
MluCI AATT 1 cut(s) 709
MlyI GAGTC 1 cut(s) 526
MmeI TCCRAC 1 cut(s) 340
MreI CGCCGGCG 1 cut(s) 379
MroNI GCCGGC 1 cut(s) 379
MseI TTAA 4 cut(s) 30, 210, 639, 802
MspA1I CMGCKG 2 cut(s) 299, 680
MspI CCGG 6 cut(s) 44, 186, 255, 272, 380, 413
MspR9I CCNGG 2 cut(s) 186, 273
MvnI CGCG 1 cut(s) 755
MwoI GCNNNNNNNGC 4 cut(s) 296, 560, 677, 686
NaeI GCCGGC 1 cut(s) 381
NciI CCSGG 2 cut(s) 186, 273
NdeII GATC 2 cut(s) 168, 611
NgoMIV GCCGGC 1 cut(s) 379
NmuCI GTSAC 2 cut(s) 308, 526
PdiI GCCGGC 1 cut(s) 381
PfeI GAWTC 1 cut(s) 181
PfoI TCCNGGA 1 cut(s) 271
PkrI GCNGC 2 cut(s) 284, 301
PleI GAGTC 1 cut(s) 526
PmaCI CACGTG 1 cut(s) 87
PmlI CACGTG 1 cut(s) 87
PpsI GAGTC 1 cut(s) 526
Ppu21I YACGTR 1 cut(s) 87
PshAI GACNNNNGTC 1 cut(s) 548
PsiI TTATAA 1 cut(s) 780
PspCI CACGTG 1 cut(s) 87
PspPI GGNCC 2 cut(s) 162, 444
PstNI CAGNNNCTG 1 cut(s) 200
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SalI GTCGAC 1 cut(s) 10
SaqAI TTAA 4 cut(s) 30, 210, 639, 802
SatI GCNGC 2 cut(s) 283, 300
Sau3AI GATC 2 cut(s) 168, 611
Sau96I GGNCC 2 cut(s) 162, 444
SchI GAGTC 1 cut(s) 526
ScrFI CCNGG 2 cut(s) 186, 273
SfaNI GCATC 2 cut(s) 399, 668
SgrAI CRCCGGYG 1 cut(s) 379
SgrDI CGTCGACG 1 cut(s) 10
SinI GGWCC 2 cut(s) 162, 444
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 1 cut(s) 709
SsiI CCGC 7 cut(s) 95, 282, 297, 663, 669, 678, 791
SspI AATATT 1 cut(s) 572
SspMI CTAG 3 cut(s) 227, 326, 771
StyD4I CCNGG 2 cut(s) 184, 271
TaaI ACNGT 6 cut(s) 111, 196, 308, 344, 637, 749
TaiI ACGT 5 cut(s) 89, 207, 357, 687, 723
TaqI TCGA 5 cut(s) 11, 114, 249, 535, 580
TaqII GACCGA 1 cut(s) 461
TasI AATT 1 cut(s) 709
TatI WGTACW 1 cut(s) 18
TauI GCSGC 1 cut(s) 285
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 4 cut(s) 30, 210, 639, 802
Tru9I TTAA 4 cut(s) 30, 210, 639, 802
TscAI CASTG 3 cut(s) 313, 640, 800
TseFI GTSAC 2 cut(s) 308, 526
TseI GCWGC 1 cut(s) 299
Tsp45I GTSAC 2 cut(s) 308, 526
TspGWI ACGGA 1 cut(s) 429
TspRI CASTG 3 cut(s) 313, 640, 800
VpaK11BI GGWCC 2 cut(s) 162, 444
XbaI TCTAGA 1 cut(s) 325
XmiI GTMKAC 1 cut(s) 11
XspI CTAG 3 cut(s) 227, 326, 771
ZraI GACGTC 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.