Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

155610 .. 157601

Gene Structure 1992 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G01380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGACCGACGTAACCCTTTCCAACATCACCACCACCACCATCAGCTTCATCATCACTTGATCCAACAGCAACAGCTTCCTCCGCCGCCGCTGAGCACCACGGCGACGATGGATCCCGGCGGAGGAGGAGGAGGTGGGGAGAGAATCCCACAGTGGAGCATAGAGGAGACAAAGGAGCTTTTGGCTATAAGAGAAGAACTTGATCAAACTTTCATGGAGACCAAACGTAATAAGCTTCTTTGGGAAGTCGTGGCTGCTAAGATGGCCGACAAGGGTTTTGTCCGAAGCGCAGAACAATGTAAGAGCAAGTGGAAGAACCTCGTCACTAGATACAAGGCGTGTGAGACCACTGAGCCAGATGCTATTAGGCAGCAGTTCCCATTCTACAATGAGATTCAGTCGATTTTTGAAGCAAGAATGCAAAGAATGCTGTGGTCAGAAGCCACAGAACCAAGCACTTCCTCGAAGAGAAAACATCATCAATTTTCATCTGATGATGAAGAAGAAGAAGTTGACGAACCAAATCAAGATATCAACGAGGAATTATTGTCTTTAGTAGAGACACAGAAAAGAGAGACAGAAGTGATTACTACTAGTACTTCGACCAATCCAAGAAAACGTGCAAAAAAAGGAAAAGGCGTTGCGAGTGGTACGAAAGCTGAAACTGCGGGTAATACACTAAAAGATATATTGGAGGAGTTTATGAGGCAAACGGTGAAGATGGAAAAGGAATGGAGAGATGCATGGGAGATGAAGGAGATAGAGAGGGAGAAGAGAGAGAAAGAGTGGCGGAGGAGAATGGCGGAGCTAGAGGAGGAAAGAGCCGCCACAGAAAGGAGGTGGATGGAGAGAGAGGAAGAGAGACGGTTGAGAGAAGAAGCTAGGGCTCAGAAGAGAGATTCTCTCATCGATGCTTTGCTTAATAGGCTTAATAGAGATCATAATGATGATCATCATAATCAAGGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016592 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

323

Amino Acids

38.27

Weight (kDa)

6.11

Isoelectric Point (pI)

67.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	51 - 135	6e-23	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	83, 86, 89, 120, 668, 790, 803, 825
AclWI	GGATC	3 cut(s)	55, 107, 120
AcoI	YGGCCR	1 cut(s)	264
AfaI	GTAC	2 cut(s)	598, 652
AfiI	CCNNNNNNNGG	2 cut(s)	122, 834
AgsI	TTSAA	1 cut(s)	410
AhlI	ACTAGT	1 cut(s)	593
AluBI	AGCT	7 cut(s)	46, 76, 178, 235, 659, 808, 881
AluI	AGCT	7 cut(s)	46, 76, 178, 235, 659, 808, 881
Alw21I	GWGCWC	1 cut(s)	98
Alw26I	GTCTC	6 cut(s)	161, 212, 338, 554, 569, 856
AlwI	GGATC	3 cut(s)	55, 107, 120
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	2 cut(s)	254, 370
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AspLEI	GCGC	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	117
AsuHPI	GGTGA	2 cut(s)	20, 727
AvaII	GGWCC	1 cut(s)	4
BamHI	GGATCC	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	889
Bbv12I	GWGCWC	1 cut(s)	98
BbvI	GCAGC	2 cut(s)	241, 382
BccI	CCATC	5 cut(s)	48, 103, 256, 715, 838
BceAI	ACGGC	1 cut(s)	117
BclI	TGATCA	2 cut(s)	202, 949
BcnI	CCSGG	1 cut(s)	117
BcoDI	GTCTC	6 cut(s)	161, 212, 338, 554, 569, 856
BcuI	ACTAGT	1 cut(s)	593
BfaI	CTAG	4 cut(s)	327, 594, 809, 882
BisI	GCNGC	5 cut(s)	86, 89, 255, 371, 825
BlpI	GCTNAGC	1 cut(s)	92
BlsI	GCNGC	5 cut(s)	87, 90, 256, 372, 826
BmcAI	AGTACT	1 cut(s)	598
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	1 cut(s)	117
BmsI	GCATC	3 cut(s)	349, 730, 901
BplI	GAGNNNNNCTC	4 cut(s)	886, 918, 888, 920
Bpu1102I	GCTNAGC	1 cut(s)	92
BpuMI	CCSGG	1 cut(s)	117
Bsa29I	ATCGAT	1 cut(s)	909
BsaBI	GATNNNNATC	1 cut(s)	951
BsaI	GGTCTC	2 cut(s)	212, 338
BsaJI	CCNNGG	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 834
Bse8I	GATNNNNATC	1 cut(s)	951
BseCI	ATCGAT	1 cut(s)	909
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	1 cut(s)	849
BseJI	GATNNNNATC	1 cut(s)	951
BseLI	CCNNNNNNNGG	2 cut(s)	122, 834
BseMII	CTCAG	3 cut(s)	83, 342, 902
BseRI	GAGGAG	7 cut(s)	138, 141, 144, 179, 710, 808, 827
BseXI	GCAGC	2 cut(s)	241, 382
BshFI	GGCC	1 cut(s)	266
BshVI	ATCGAT	1 cut(s)	909
BsiHKAI	GWGCWC	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	117
BslI	CCNNNNNNNGG	2 cut(s)	122, 834
BsmAI	GTCTC	6 cut(s)	161, 212, 338, 554, 569, 856
BsmBI	CGTCTC	1 cut(s)	856
BsmI	GAATGC	2 cut(s)	423, 432
BsnI	GGCC	1 cut(s)	266
Bso31I	GGTCTC	2 cut(s)	212, 338
Bsp1286I	GDGCHC	2 cut(s)	98, 889
Bsp143I	GATC	5 cut(s)	60, 112, 202, 937, 949
Bsp1720I	GCTNAGC	1 cut(s)	92
BspACI	CCGC	8 cut(s)	83, 86, 89, 120, 668, 790, 803, 825
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	3 cut(s)	84, 343, 901
BspDI	ATCGAT	1 cut(s)	909
BspLI	GGNNCC	1 cut(s)	114
BspPI	GGATC	3 cut(s)	55, 107, 120
BspTNI	GGTCTC	2 cut(s)	212, 338
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	5 cut(s)	60, 112, 202, 937, 949
Bst4CI	ACNGT	3 cut(s)	153, 715, 867
Bst6I	CTCTTC	4 cut(s)	461, 767, 852, 887
BstAPI	GCANNNNNTGC	1 cut(s)	427
BstDEI	CTNAG	4 cut(s)	92, 258, 351, 888
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	849
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	5 cut(s)	63, 115, 205, 940, 952
BstMAI	GTCTC	6 cut(s)	161, 212, 338, 554, 569, 856
BstMBI	GATC	5 cut(s)	60, 112, 202, 937, 949
BstMWI	GCNNNNNNNGC	5 cut(s)	82, 263, 427, 665, 925
BstSCI	CCNGG	1 cut(s)	115
BstV1I	GCAGC	2 cut(s)	241, 382
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
Bsu15I	ATCGAT	1 cut(s)	909
BsuRI	GGCC	1 cut(s)	266
BsuTUI	ATCGAT	1 cut(s)	909
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	849
BtsIMutI	CAGTG	2 cut(s)	158, 348
CfoI	GCGC	1 cut(s)	290
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	909
Csp6I	GTAC	2 cut(s)	597, 651
CviAII	CATG	2 cut(s)	214, 744
CviQI	GTAC	2 cut(s)	597, 651
DdeI	CTNAG	4 cut(s)	92, 258, 351, 888
DpnI	GATC	5 cut(s)	62, 114, 204, 939, 951
DpnII	GATC	5 cut(s)	60, 112, 202, 937, 949
EaeI	YGGCCR	1 cut(s)	264
Eam1104I	CTCTTC	4 cut(s)	461, 767, 852, 887
EarI	CTCTTC	4 cut(s)	461, 767, 852, 887
EciI	GGCGGA	4 cut(s)	72, 135, 805, 818
Eco24I	GRGCYC	1 cut(s)	889
Eco31I	GGTCTC	2 cut(s)	212, 338
Eco32I	GATATC	1 cut(s)	532
Eco47I	GGWCC	1 cut(s)	4
EcoRV	GATATC	1 cut(s)	532
EcoT22I	ATGCAT	1 cut(s)	745
EcoT38I	GRGCYC	1 cut(s)	889
Esp3I	CGTCTC	1 cut(s)	856
FaeI	CATG	2 cut(s)	217, 747
FaiI	YATR	8 cut(s)	161, 188, 215, 689, 704, 745, 942, 957
FatI	CATG	2 cut(s)	213, 743
FauI	CCCGC	1 cut(s)	661
FbaI	TGATCA	2 cut(s)	202, 949
Fnu4HI	GCNGC	5 cut(s)	86, 89, 255, 371, 825
FokI	GGATG	1 cut(s)	856
FriOI	GRGCYC	1 cut(s)	889
Fsp4HI	GCNGC	5 cut(s)	86, 89, 255, 371, 825
FspBI	CTAG	4 cut(s)	327, 594, 809, 882
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	5 cut(s)	86, 89, 255, 371, 825
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	1 cut(s)	117
HhaI	GCGC	1 cut(s)	290
Hin1II	CATG	2 cut(s)	217, 747
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	3 cut(s)	144, 394, 899
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	2 cut(s)	20, 727
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188I	TCNGA	4 cut(s)	284, 439, 493, 891
Hpy188III	TCNNGA	1 cut(s)	527
Hpy8I	GTNNAC	1 cut(s)	514
Hpy99I	CGWCG	2 cut(s)	12, 109
HpyAV	CCTTC	1 cut(s)	748
HpyCH4III	ACNGT	3 cut(s)	153, 715, 867
HpyCH4IV	ACGT	3 cut(s)	10, 226, 619
HpyCH4V	TGCA	3 cut(s)	421, 623, 743
HpyF10VI	GCNNNNNNNGC	5 cut(s)	82, 263, 427, 665, 925
HpyF3I	CTNAG	4 cut(s)	92, 258, 351, 888
HpySE526I	ACGT	3 cut(s)	10, 226, 619
Hsp92II	CATG	2 cut(s)	217, 747
HspAI	GCGC	1 cut(s)	288
Ksp22I	TGATCA	2 cut(s)	202, 949
Kzo9I	GATC	5 cut(s)	60, 112, 202, 937, 949
LmnI	GCTCC	3 cut(s)	156, 175, 805
LpnPI	CCDG	2 cut(s)	130, 369
Lsp1109I	GCAGC	2 cut(s)	241, 382
LweI	GCATC	3 cut(s)	349, 730, 901
MaeI	CTAG	4 cut(s)	327, 594, 809, 882
MaeII	ACGT	3 cut(s)	10, 226, 619
MaeIII	GTNAC	2 cut(s)	11, 322
MalI	GATC	5 cut(s)	62, 114, 204, 939, 951
MboI	GATC	5 cut(s)	60, 112, 202, 937, 949
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	2 cut(s)	98, 889
MluCI	AATT	2 cut(s)	482, 542
MmeI	TCCRAC	2 cut(s)	46, 88
Mph1103I	ATGCAT	1 cut(s)	745
MseI	TTAA	2 cut(s)	921, 930
MslI	CAYNNNNRTG	1 cut(s)	945
MspA1I	CMGCKG	1 cut(s)	91
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	1 cut(s)	117
Mva1269I	GAATGC	2 cut(s)	423, 432
MwoI	GCNNNNNNNGC	5 cut(s)	82, 263, 427, 665, 925
NciI	CCSGG	1 cut(s)	117
NdeII	GATC	5 cut(s)	60, 112, 202, 937, 949
NlaIII	CATG	2 cut(s)	217, 747
NlaIV	GGNNCC	1 cut(s)	114
NmuCI	GTSAC	1 cut(s)	322
NsiI	ATGCAT	1 cut(s)	745
PctI	GAATGC	2 cut(s)	423, 432
PfeI	GAWTC	3 cut(s)	144, 394, 899
PkrI	GCNGC	5 cut(s)	87, 90, 256, 372, 826
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	112
RsaI	GTAC	2 cut(s)	598, 652
RsaNI	GTAC	2 cut(s)	597, 651
RseI	CAYNNNNRTG	1 cut(s)	945
SaqAI	TTAA	2 cut(s)	921, 930
SatI	GCNGC	5 cut(s)	86, 89, 255, 371, 825
Sau3AI	GATC	5 cut(s)	60, 112, 202, 937, 949
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	1 cut(s)	598
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	2 cut(s)	98, 889
SfaNI	GCATC	3 cut(s)	349, 730, 901
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	945
SpeI	ACTAGT	1 cut(s)	593
Sse9I	AATT	2 cut(s)	482, 542
SsiI	CCGC	8 cut(s)	83, 86, 89, 120, 668, 790, 803, 825
SspMI	CTAG	4 cut(s)	327, 594, 809, 882
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	3 cut(s)	153, 715, 867
TaiI	ACGT	3 cut(s)	13, 229, 622
TaqI	TCGA	4 cut(s)	401, 464, 602, 909
TaqII	GACCGA	1 cut(s)	21
TasI	AATT	2 cut(s)	482, 542
TatI	WGTACW	1 cut(s)	596
TauI	GCSGC	3 cut(s)	88, 91, 827
TfiI	GAWTC	3 cut(s)	144, 394, 899
Tru1I	TTAA	2 cut(s)	921, 930
Tru9I	TTAA	2 cut(s)	921, 930
TscAI	CASTG	2 cut(s)	158, 355
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	2 cut(s)	254, 370
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	5 cut(s)	38, 202, 477, 513, 767
TspRI	CASTG	2 cut(s)	158, 355
VpaK11BI	GGWCC	1 cut(s)	4
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XspI	CTAG	4 cut(s)	327, 594, 809, 882
ZrmI	AGTACT	1 cut(s)	598
Zsp2I	ATGCAT	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.