AT5G15830
BZIP Family

Basic leucine zipper 43-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
N/A
Physical Location & Seq
Forward (+)
5168194 .. 5169365
1172 bp
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UTR
Exon/CDS
Intron
AT5G15830.1

Sequence Viewer

Length: 561 bp
ATGCAGCCAAATTATGATAGCTCAAGTCTTAACAACATGCAACAACAAGACTACTTCAACTTGAACAACTACTACAACAACTTAAACCCTTCAACCAATAACAACAACCTCAATATCCTCCAATACCCTCAAATTCAAGAACTCAACCTACAATCTCCGGTAAGCAACAACTCCACAACTTCCGATGACGCAACTGAAGAAATCTTCGTCATCAACGAGAGGAAGCAAAGACGTATGGTATCTAACAGAGAGTCAGCAAGAAGATCAAGAATGAGAAAGCAAAGACACTTAGATGAGCTTCTCTCACAGGTTGCTTGGCTTCGAAGCGAGAACCACCAGCTTTTAGATAAGCTTAACCAAGTCTCCGACAACAATGATCTTGTTATTCAAGAGAACTCGAGTCTTAAAGAAGAAAACTTGGAGCTTCGTCAGGTTATCACATCCATGAAGAAGCTTGGAGGAGGCATACATGACAAATATTCTTCTCCGTCGTCTATGGATGAATTGGATCAAGACTTTTCTTCTATCACAGATGATCCAAGAACTCATCATCCATCATGA

Protein Analysis

186

Amino Acids

21.66

Weight (kDa)

5.2

Isoelectric Point (pI)

68.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 73 - 121 9.9e-09 Basic region leucine zipper
bZIP_1 PF00170 74 - 125 1.6e-12 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 516, 530
AcsI RAATTY 1 cut(s) 132
AcuI CTGAAG 1 cut(s) 216
AgsI TTSAA 5 cut(s) 58, 64, 93, 137, 389
AloI GAACNNNNNNTCC 1 cut(s) 535
AluBI AGCT 6 cut(s) 21, 298, 340, 352, 424, 454
AluI AGCT 6 cut(s) 21, 298, 340, 352, 424, 454
Alw26I GTCTC 1 cut(s) 367
AlwI GGATC 2 cut(s) 516, 530
Ama87I CYCGRG 1 cut(s) 397
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 132
AsuII TTCGAA 1 cut(s) 322
AvaI CYCGRG 1 cut(s) 397
BbvI GCAGC 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 367
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
BmeT110I CYCGRG 1 cut(s) 397
BplI GAGNNNNNCTC 2 cut(s) 287, 319
Bpu14I TTCGAA 1 cut(s) 322
BpuEI CTTGAG 1 cut(s) 7
BsaWI WCCGGW 1 cut(s) 157
BsaXI ACNNNNNCTCC 2 cut(s) 347, 377
BseGI GGATG 3 cut(s) 440, 505, 550
BseRI GAGGAG 1 cut(s) 474
BseXI GCAGC 1 cut(s) 16
BsiHKCI CYCGRG 1 cut(s) 397
BsiSI CCGG 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 367
BsoBI CYCGRG 1 cut(s) 397
Bsp119I TTCGAA 1 cut(s) 322
Bsp143I GATC 4 cut(s) 263, 376, 508, 535
BspHI TCATGA 1 cut(s) 557
BspPI GGATC 2 cut(s) 516, 530
BspT104I TTCGAA 1 cut(s) 322
BssMI GATC 4 cut(s) 263, 376, 508, 535
BstBI TTCGAA 1 cut(s) 322
BstDEI CTNAG 1 cut(s) 289
BstF5I GGATG 3 cut(s) 440, 505, 550
BstKTI GATC 4 cut(s) 266, 379, 511, 538
BstMAI GTCTC 1 cut(s) 367
BstMBI GATC 4 cut(s) 263, 376, 508, 535
BstNSI RCATGY 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 16
BtsCI GGATG 3 cut(s) 440, 505, 550
CciI TCATGA 1 cut(s) 557
CseI GACGC 1 cut(s) 197
CviAII CATG 4 cut(s) 37, 445, 470, 558
CviJI RGCY 8 cut(s) 7, 21, 298, 319, 340, 352, 424, 454
CviKI_1 RGCY 8 cut(s) 7, 21, 298, 319, 340, 352, 424, 454
DdeI CTNAG 1 cut(s) 289
DpnI GATC 4 cut(s) 265, 378, 510, 537
DpnII GATC 4 cut(s) 263, 376, 508, 535
Eco57I CTGAAG 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 397
FaeI CATG 4 cut(s) 40, 448, 473, 561
FaiI YATR 8 cut(s) 15, 38, 236, 446, 467, 471, 497, 559
FatI CATG 4 cut(s) 36, 444, 469, 557
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 3 cut(s) 427, 512, 537
Fsp4HI GCNGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 5
HapII CCGG 1 cut(s) 158
HgaI GACGC 1 cut(s) 197
Hin1II CATG 4 cut(s) 40, 448, 473, 561
HindIII AAGCTT 2 cut(s) 350, 452
HinfI GANTC 2 cut(s) 251, 400
HpaII CCGG 1 cut(s) 158
Hpy188I TCNGA 2 cut(s) 184, 367
Hpy188III TCNNGA 5 cut(s) 137, 267, 389, 512, 558
Hpy99I CGWCG 1 cut(s) 493
HpyAV CCTTC 1 cut(s) 99
HpyCH4IV ACGT 1 cut(s) 232
HpyCH4V TGCA 2 cut(s) 4, 40
HpyF3I CTNAG 1 cut(s) 289
HpySE526I ACGT 1 cut(s) 232
Hsp92II CATG 4 cut(s) 40, 448, 473, 561
Kzo9I GATC 4 cut(s) 263, 376, 508, 535
LmnI GCTCC 1 cut(s) 421
LpnPI CCDG 4 cut(s) 171, 293, 350, 416
Lsp1109I GCAGC 1 cut(s) 16
MaeII ACGT 1 cut(s) 232
MalI GATC 4 cut(s) 265, 378, 510, 537
MboI GATC 4 cut(s) 263, 376, 508, 535
MboII GAAGA 7 cut(s) 196, 209, 273, 422, 460, 474, 513
MluCI AATT 3 cut(s) 10, 132, 503
MlyI GAGTC 2 cut(s) 260, 409
MmeI TCCRAC 1 cut(s) 390
MnlI CCTC 6 cut(s) 119, 128, 138, 213, 452, 455
MseI TTAA 4 cut(s) 30, 83, 354, 405
MslI CAYNNNNRTG 2 cut(s) 291, 443
MspI CCGG 1 cut(s) 158
NdeII GATC 4 cut(s) 263, 376, 508, 535
NlaIII CATG 4 cut(s) 40, 448, 473, 561
NspI RCATGY 1 cut(s) 40
NspV TTCGAA 1 cut(s) 322
PaeR7I CTCGAG 1 cut(s) 397
PagI TCATGA 1 cut(s) 557
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 2 cut(s) 259, 408
PpsI GAGTC 2 cut(s) 259, 408
PspXI VCTCGAGB 1 cut(s) 397
PsrI GAACNNNNNNTAC 4 cut(s) 56, 88, 132, 164
RseI CAYNNNNRTG 2 cut(s) 291, 443
SaqAI TTAA 4 cut(s) 30, 83, 354, 405
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 4 cut(s) 263, 376, 508, 535
SchI GAGTC 2 cut(s) 260, 409
Sfr274I CTCGAG 1 cut(s) 397
SfuI TTCGAA 1 cut(s) 322
SlaI CTCGAG 1 cut(s) 397
SmiMI CAYNNNNRTG 2 cut(s) 291, 443
SmlI CTYRAG 2 cut(s) 22, 397
SmoI CTYRAG 2 cut(s) 22, 397
Sse9I AATT 3 cut(s) 10, 132, 503
SspI AATATT 1 cut(s) 479
TaiI ACGT 1 cut(s) 235
TaqI TCGA 2 cut(s) 322, 398
TasI AATT 3 cut(s) 10, 132, 503
Tru1I TTAA 4 cut(s) 30, 83, 354, 405
Tru9I TTAA 4 cut(s) 30, 83, 354, 405
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 2 cut(s) 461, 516
TspGWI ACGGA 1 cut(s) 477
XapI RAATTY 1 cut(s) 132
XceI RCATGY 1 cut(s) 40
XhoI CTCGAG 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.