Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

5438165 .. 5440433

Gene Structure 2269 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G16600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGGGAGGCAACCATGTTGTGACAAAGTAGGGTTAAAGAAAGGGCCATGGACTATTGAAGAAGACAAGAAGCTCATCAACTTCATCCTCACCAATGGCCATTGCTGTTGGAGAGCTCTTCCCAAGCTTTCTGGACTATTGCGGTGTGGTAAAAGCTGCAGATTAAGATGGATAAATTATTTAAGACCTGATTTAAAAAGAGGTCTTTTATCAGAATATGAAGAACAAAAGGTCATTAATCTCCATGCGCAACTTGGCAATAGATGGTCAAAGATTGCCTCTCATCTACCAGGAAGAACTGATAATGAAATAAAGAACCATTGGAACACACACATAAAGAAAAAGCTAAGGAAAATGGGTATTGACCCTTTGACCCATAAGCCTCTCTCTGAACAAGAAGCTTCACAACAAGCTCAAGGGAGAAAGAAAAGTTTAGTGCCTCATGATGACAAGAACCCAAAACAAGATCAACAAACCAAAGACGAACAAGAACAACATCAATTAGAGCAAGCTTTGGAGAAGAACAACACATCAGTGTCTGGTGATGGGTTTTGCATTGATGAAGTCCCATTGCTCAATCCACATGAGATCTTGATCGACATCTCTTCTTCTCATCATCATCATTCTAATGATGATAATGTCAATATCAACACTAGTAAATTTACTTCTCCTTCTTCCTCTTCCTCTTCTACGTCGTCGTGTATATCATCAGTAGTACCGGGTGATGAGTTCTCCAAGTTTTTTGATGAAATGGAGATTCTTGACCTCAAGTGGCTTTCATCCGATGATTCTTTAGGGGACGATATTAGCAAAGACGGCAAGTTCAACAACAGTACTGTTGATACGATGAACTTGTGGGACATCAATGATTTGAGCAGCTTGGATATGTTTATGAATGAACATGATGATGGTTTTATTGGAAATGGAAATGGATGTTCAAGAATGGTTTTAGATCAAGATTCATGGACATTTGATCTCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0001158 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0035326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0047484 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1901000 GO:1901002 GO:1901363 GO:1902679 GO:1903338 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

327

Amino Acids

37.11

Weight (kDa)

5.77

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	8.9e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	71 - 111	1.5e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 118	1.6e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	249
AciI	CCGC	1 cut(s)	142
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	659
AfaI	GTAC	2 cut(s)	717, 835
AgsI	TTSAA	3 cut(s)	59, 826, 939
AhlI	ACTAGT	1 cut(s)	653
AjnI	CCWGG	1 cut(s)	289
AleI	CACNNNNGTG	1 cut(s)	533
AluBI	AGCT	9 cut(s)	73, 116, 127, 156, 346, 401, 413, 512, 879
AluI	AGCT	9 cut(s)	73, 116, 127, 156, 346, 401, 413, 512, 879
Alw21I	GWGCWC	1 cut(s)	118
AlwNI	CAGNNNCTG	1 cut(s)	539
AoxI	GGCC	2 cut(s)	44, 97
ApeKI	GCWGC	2 cut(s)	156, 876
ApoI	RAATTY	1 cut(s)	659
AseI	ATTAAT	1 cut(s)	237
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	1 cut(s)	44
AsuC2I	CCSGG	1 cut(s)	720
AsuHPI	GGTGA	3 cut(s)	82, 554, 734
BalI	TGGCCA	1 cut(s)	99
BanII	GRGCYC	1 cut(s)	118
BarI	GAAGNNNNNNTAC	2 cut(s)	649, 681
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	2 cut(s)	143, 888
BccI	CCATC	4 cut(s)	162, 258, 539, 902
BceAI	ACGGC	1 cut(s)	832
BciT130I	CCWGG	1 cut(s)	291
BcnI	CCSGG	1 cut(s)	720
BcuI	ACTAGT	1 cut(s)	653
BfaI	CTAG	2 cut(s)	654, 982
BfmI	CTRYAG	1 cut(s)	157
BglII	AGATCT	1 cut(s)	588
BisI	GCNGC	2 cut(s)	157, 877
BlsI	GCNGC	2 cut(s)	158, 878
BmcAI	AGTACT	1 cut(s)	835
Bme1390I	CCNGG	2 cut(s)	291, 720
BmgT120I	GGNCC	1 cut(s)	44
BmrFI	CCNGG	2 cut(s)	291, 720
BpiI	GAAGAC	1 cut(s)	69
Bpu10I	CCTNAGC	1 cut(s)	347
BpuEI	CTTGAG	2 cut(s)	399, 752
BpuMI	CCSGG	1 cut(s)	720
BsaBI	GATNNNNATC	2 cut(s)	593, 599
BsaJI	CCNNGG	1 cut(s)	47
Bse3DI	GCAATG	2 cut(s)	100, 569
Bse8I	GATNNNNATC	2 cut(s)	593, 599
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	3 cut(s)	84, 779, 938
BseJI	GATNNNNATC	2 cut(s)	593, 599
BseMI	GCAATG	2 cut(s)	100, 569
BseRI	GAGGAG	1 cut(s)	968
BseXI	GCAGC	2 cut(s)	143, 888
BshFI	GGCC	2 cut(s)	46, 99
BsiHKAI	GWGCWC	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	719
BslFI	GGGAC	3 cut(s)	551, 812, 872
BsmFI	GGGAC	3 cut(s)	551, 812, 872
BsnI	GGCC	2 cut(s)	46, 99
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	5 cut(s)	466, 588, 594, 952, 973
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	1 cut(s)	142
BspANI	GGCC	2 cut(s)	46, 99
BspHI	TCATGA	1 cut(s)	442
BspMAI	CTGCAG	1 cut(s)	161
BspQI	GCTCTTC	1 cut(s)	123
BsrDI	GCAATG	2 cut(s)	100, 569
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	5 cut(s)	466, 588, 594, 952, 973
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	833, 838
Bst6I	CTCTTC	4 cut(s)	123, 610, 685, 691
BstC8I	GCNNGC	1 cut(s)	510
BstDEI	CTNAG	1 cut(s)	347
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	3 cut(s)	84, 779, 938
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	5 cut(s)	469, 591, 597, 955, 976
BstMBI	GATC	5 cut(s)	466, 588, 594, 952, 973
BstMWI	GCNNNNNNNGC	1 cut(s)	816
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	2 cut(s)	289, 718
BstSFI	CTRYAG	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	143, 888
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	588
BstYI	RGATCY	1 cut(s)	588
BsuRI	GGCC	2 cut(s)	46, 99
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	3 cut(s)	84, 779, 938
BtsIMutI	CAGTG	1 cut(s)	540
Cac8I	GCNNGC	1 cut(s)	510
CaiI	CAGNNNCTG	1 cut(s)	539
CciI	TCATGA	1 cut(s)	442
CfoI	GCGC	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	2 cut(s)	716, 834
CviAII	CATG	7 cut(s)	15, 48, 245, 443, 584, 902, 963
CviQI	GTAC	2 cut(s)	716, 834
DdeI	CTNAG	1 cut(s)	347
DpnI	GATC	5 cut(s)	468, 590, 596, 954, 975
DpnII	GATC	5 cut(s)	466, 588, 594, 952, 973
DraI	TTTAAA	1 cut(s)	195
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	4 cut(s)	123, 610, 685, 691
EarI	CTCTTC	4 cut(s)	123, 610, 685, 691
Ecl136II	GAGCTC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	118
Eco53kI	GAGCTC	1 cut(s)	116
EcoICRI	GAGCTC	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	7 cut(s)	18, 51, 248, 446, 587, 905, 966
FaqI	GGGAC	3 cut(s)	551, 812, 872
FatI	CATG	7 cut(s)	14, 47, 244, 442, 583, 901, 962
Fnu4HI	GCNGC	2 cut(s)	157, 877
FokI	GGATG	3 cut(s)	71, 766, 945
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	2 cut(s)	157, 877
FspBI	CTAG	2 cut(s)	654, 982
FspI	TGCGCA	1 cut(s)	249
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	2 cut(s)	157, 877
HaeIII	GGCC	2 cut(s)	46, 99
HapII	CCGG	1 cut(s)	719
HhaI	GCGC	1 cut(s)	250
Hin1II	CATG	7 cut(s)	18, 51, 248, 446, 587, 905, 966
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HindIII	AAGCTT	3 cut(s)	125, 399, 510
HinfI	GANTC	3 cut(s)	757, 788, 959
HpaII	CCGG	1 cut(s)	719
HphI	GGTGA	3 cut(s)	82, 554, 734
Hpy188I	TCNGA	3 cut(s)	214, 391, 784
Hpy188III	TCNNGA	6 cut(s)	132, 443, 592, 761, 939, 956
Hpy99I	CGWCG	2 cut(s)	697, 700
HpyAV	CCTTC	1 cut(s)	681
HpyCH4III	ACNGT	2 cut(s)	833, 838
HpyCH4IV	ACGT	1 cut(s)	692
HpyCH4V	TGCA	2 cut(s)	159, 555
HpyF10VI	GCNNNNNNNGC	1 cut(s)	816
HpyF3I	CTNAG	1 cut(s)	347
HpySE526I	ACGT	1 cut(s)	692
Hsp92II	CATG	7 cut(s)	18, 51, 248, 446, 587, 905, 966
HspAI	GCGC	1 cut(s)	248
Kzo9I	GATC	5 cut(s)	466, 588, 594, 952, 973
LguI	GCTCTTC	1 cut(s)	123
LpnPI	CCDG	6 cut(s)	117, 201, 276, 303, 525, 732
Lsp1109I	GCAGC	2 cut(s)	143, 888
MaeI	CTAG	2 cut(s)	654, 982
MaeII	ACGT	1 cut(s)	692
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	5 cut(s)	468, 590, 596, 954, 975
MboI	GATC	5 cut(s)	466, 588, 594, 952, 973
MflI	RGATCY	1 cut(s)	588
MhlI	GDGCHC	1 cut(s)	118
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	3 cut(s)	175, 500, 659
MluNI	TGGCCA	1 cut(s)	99
MmeI	TCCRAC	1 cut(s)	89
MnlI	CCTC	8 cut(s)	98, 194, 289, 393, 450, 688, 694, 776
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	5 cut(s)	35, 164, 182, 194, 237
MslI	CAYNNNNRTG	3 cut(s)	533, 627, 906
Msp20I	TGGCCA	1 cut(s)	99
MspI	CCGG	1 cut(s)	719
MspR9I	CCNGG	2 cut(s)	291, 720
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	816
NciI	CCSGG	1 cut(s)	720
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	5 cut(s)	466, 588, 594, 952, 973
NlaIII	CATG	7 cut(s)	18, 51, 248, 446, 587, 905, 966
NmuCI	GTSAC	1 cut(s)	20
NsbI	TGCGCA	1 cut(s)	249
OliI	CACNNNNGTG	1 cut(s)	533
PagI	TCATGA	1 cut(s)	442
PciSI	GCTCTTC	1 cut(s)	123
PfeI	GAWTC	3 cut(s)	757, 788, 959
PkrI	GCNGC	2 cut(s)	158, 878
PshBI	ATTAAT	1 cut(s)	237
Psp124BI	GAGCTC	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspPI	GGNCC	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	161
PstNI	CAGNNNCTG	1 cut(s)	539
PsuI	RGATCY	1 cut(s)	588
RsaI	GTAC	2 cut(s)	717, 835
RsaNI	GTAC	2 cut(s)	716, 834
RseI	CAYNNNNRTG	3 cut(s)	533, 627, 906
SacI	GAGCTC	1 cut(s)	118
SapI	GCTCTTC	1 cut(s)	123
SaqAI	TTAA	5 cut(s)	35, 164, 182, 194, 237
SatI	GCNGC	2 cut(s)	157, 877
Sau3AI	GATC	5 cut(s)	466, 588, 594, 952, 973
Sau96I	GGNCC	1 cut(s)	44
ScaI	AGTACT	1 cut(s)	835
ScrFI	CCNGG	2 cut(s)	291, 720
SduI	GDGCHC	1 cut(s)	118
SfcI	CTRYAG	1 cut(s)	157
SmiMI	CAYNNNNRTG	3 cut(s)	533, 627, 906
SmlI	CTYRAG	2 cut(s)	414, 767
SmoI	CTYRAG	2 cut(s)	414, 767
SpeI	ACTAGT	1 cut(s)	653
Sse9I	AATT	3 cut(s)	175, 500, 659
SsiI	CCGC	1 cut(s)	142
SspMI	CTAG	2 cut(s)	654, 982
SstI	GAGCTC	1 cut(s)	118
StyD4I	CCNGG	2 cut(s)	289, 718
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	2 cut(s)	833, 838
TaiI	ACGT	1 cut(s)	695
TaqI	TCGA	1 cut(s)	597
TasI	AATT	3 cut(s)	175, 500, 659
TatI	WGTACW	1 cut(s)	833
TfiI	GAWTC	3 cut(s)	757, 788, 959
Tru1I	TTAA	5 cut(s)	35, 164, 182, 194, 237
Tru9I	TTAA	5 cut(s)	35, 164, 182, 194, 237
TscAI	CASTG	1 cut(s)	540
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	2 cut(s)	156, 876
Tsp45I	GTSAC	1 cut(s)	20
TspRI	CASTG	1 cut(s)	540
VspI	ATTAAT	1 cut(s)	237
XapI	RAATTY	1 cut(s)	659
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XspI	CTAG	2 cut(s)	654, 982
ZrmI	AGTACT	1 cut(s)	835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.