AT5G17800
MYB Family

myb domain protein 56

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
N/A
Physical Location & Seq
Forward (+)
5877113 .. 5879331
2219 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17800.1

Sequence Viewer

Length: 972 bp
ATGAATCCAAATCTCCTTGAGAAAGATCTAAGAGGTAAGGAAACTACAAATGGGTCAATAAGATACAAAGAAGCAAACAACTTCAGATCTCTACCAAACTCACACACTGCTGCTTGTAAAACTTCACTCAACAACCCCTCTATCTCTAGAAACCATCCTCACAACAAATCAGCCTCAGTCTTGGAGTCGGAAGATGAACATGGGAACGAGAGAGGTGAAAACGAAAAGAGTTTAAGAATGAGGGGCAAAAGTGGAATTAACACAAAAGTATGCTCACGAGGACACTGGAGACCAACAGAAGATGCTAAACTCAAGGAGCTTGTTGCCCAGTTTGGTCCCCAAAACTGGAACTTGATTTCTAACCACCTTCTTGGTAGATCAGGCAAGAGTTGTAGATTGAGATGGTTTAACCAACTAGACCCAAGGATTAACAAGAGAGCCTTCACGGAGGAAGAAGAGTTTAGGCTGTTAGCAGCTCATCGAGCCTATGGCAACAAGTGGGCTTTGATCTCTCGTCTCTTTCCAGGTCGTACCGATAACGCTGTCAAGAACCATTGGCACGTCATCATGGCTCGACGGACTAGAGAAAGCCAAAGACAACGTCAACAGCCTCCTCCGACGTTGTCAAGAGACGCTGAAATGACGGTTTCGTCCTCTTGCCGCTACAATCAAGGTAAGTTCATCAATGAAGAAGATGACGACGACGATGTGTCAGCTGTCTCTACTTGTACGACGGAGCTCTCTCTCACTCCGCCTTCTTCAGCTTACCAGCCTCGCTTCTTTAATTACGATAGTACCCTTGCATCAGGCAAAGATGGTCAGTGTGTGCAGAGAGCAGAAGTAAATGGCATATATGGTAAAAAGATGGACCATCAAAATCACCACACAATCTCAGTCAGTGAAAGAAAGGTGGAGATGAAGATGAGGAGTGGCTATTACTACTTTGATTTTCTTGGAGTTGGAGCTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000987 GO:0000988 GO:0000989 GO:0001012 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0001935 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008283 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009741 GO:0009751 GO:0009753 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035670 GO:0040008 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048532 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048585 GO:0048586 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050673 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051302 GO:0051704 GO:0051707 GO:0051716 GO:0051782 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071396 GO:0071407 GO:0071495 GO:0080050 GO:0080060 GO:0080090 GO:0080113 GO:0090567 GO:0097159 GO:0097305 GO:0098542 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1904961 GO:1990837 GO:2000022 GO:2000026 GO:2000028 GO:2000031 GO:2000112 GO:2000241 GO:2000242 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

323

Amino Acids

36.89

Weight (kDa)

9.39

Isoelectric Point (pI)

43.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 93 - 139 7.6e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 96 - 156 6.3e-16 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 145 - 187 3.2e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 148 - 195 1.4e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 649
AciI CCGC 2 cut(s) 661, 752
AcuI CTGAAG 2 cut(s) 67, 744
AfaI GTAC 3 cut(s) 532, 730, 796
AfiI CCNNNNNNNGG 1 cut(s) 345
AhdI GACNNNNNGTC 1 cut(s) 709
AjiI CACGTC 1 cut(s) 562
AjnI CCWGG 1 cut(s) 523
AluBI AGCT 6 cut(s) 319, 476, 716, 739, 764, 965
AluI AGCT 6 cut(s) 319, 476, 716, 739, 764, 965
Alw21I GWGCWC 1 cut(s) 741
Alw26I GTCTC 4 cut(s) 283, 521, 624, 724
ApeKI GCWGC 2 cut(s) 110, 473
ArsI GACNNNNNNTTYG 2 cut(s) 586, 618
AspS9I GGNCC 2 cut(s) 335, 868
AsuHPI GGTGA 2 cut(s) 227, 872
AvaII GGWCC 2 cut(s) 335, 868
BaeI ACNNNNGTAYC 2 cut(s) 778, 811
BanII GRGCYC 1 cut(s) 741
BauI CACGAG 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 741
BbvI GCAGC 2 cut(s) 97, 485
BccI CCATC 5 cut(s) 162, 396, 809, 859, 879
BciT130I CCWGG 1 cut(s) 525
BcoDI GTCTC 4 cut(s) 283, 521, 624, 724
BfaI CTAG 3 cut(s) 147, 416, 582
BglII AGATCT 2 cut(s) 25, 86
BisI GCNGC 3 cut(s) 111, 474, 661
BlsI GCNGC 3 cut(s) 112, 475, 662
Bme1390I CCNGG 1 cut(s) 525
Bme18I GGWCC 2 cut(s) 335, 868
BmeRI GACNNNNNGTC 1 cut(s) 709
BmgBI CACGTC 1 cut(s) 562
BmgT120I GGNCC 2 cut(s) 335, 868
BmiI GGNNCC 1 cut(s) 337
BmrFI CCNGG 1 cut(s) 525
BmrI ACTGGG 1 cut(s) 322
BmsI GCATC 2 cut(s) 292, 812
BmuI ACTGGG 1 cut(s) 322
BpmI CTGGAG 1 cut(s) 307
BpuEI CTTGAG 2 cut(s) 38, 296
BsaI GGTCTC 1 cut(s) 283
BsaJI CCNNGG 1 cut(s) 422
Bsc4I CCNNNNNNNGG 1 cut(s) 345
Bse1I ACTGG 3 cut(s) 290, 328, 350
BseBI CCWGG 1 cut(s) 525
BseDI CCNNGG 1 cut(s) 422
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 1 cut(s) 345
BseMII CTCAG 2 cut(s) 189, 906
BseNI ACTGG 3 cut(s) 290, 328, 350
BseRI GAGGAG 2 cut(s) 603, 940
BseXI GCAGC 2 cut(s) 97, 485
BsgI GTGCAG 1 cut(s) 848
BsiHKAI GWGCWC 1 cut(s) 741
BslFI GGGAC 1 cut(s) 321
BslI CCNNNNNNNGG 1 cut(s) 345
BsmAI GTCTC 4 cut(s) 283, 521, 624, 724
BsmBI CGTCTC 2 cut(s) 521, 624
BsmFI GGGAC 1 cut(s) 321
Bso31I GGTCTC 1 cut(s) 283
Bsp1286I GDGCHC 1 cut(s) 741
Bsp143I GATC 4 cut(s) 25, 86, 377, 507
BspACI CCGC 2 cut(s) 661, 752
BspCNI CTCAG 2 cut(s) 188, 905
BspLI GGNNCC 1 cut(s) 337
BspTNI GGTCTC 1 cut(s) 283
BsrI ACTGG 3 cut(s) 290, 328, 350
BssECI CCNNGG 1 cut(s) 422
BssMI GATC 4 cut(s) 25, 86, 377, 507
BssSI CACGAG 1 cut(s) 276
BssT1I CCWWGG 1 cut(s) 422
Bst2BI CACGAG 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 525
Bst4CI ACNGT 1 cut(s) 646
Bst6I CTCTTC 1 cut(s) 450
BstDEI CTNAG 3 cut(s) 29, 175, 892
BstF5I GGATG 1 cut(s) 154
BstKTI GATC 4 cut(s) 28, 89, 380, 510
BstMAI GTCTC 4 cut(s) 283, 521, 624, 724
BstMBI GATC 4 cut(s) 25, 86, 377, 507
BstMWI GCNNNNNNNGC 1 cut(s) 482
BstNI CCWGG 1 cut(s) 525
BstSCI CCNGG 1 cut(s) 523
BstV1I GCAGC 2 cut(s) 97, 485
BstX2I RGATCY 2 cut(s) 25, 86
BstXI CCANNNNNNTGG 1 cut(s) 371
BstYI RGATCY 2 cut(s) 25, 86
BtrI CACGTC 1 cut(s) 562
BtsCI GGATG 1 cut(s) 154
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 4 cut(s) 105, 283, 827, 904
Cfr13I GGNCC 2 cut(s) 335, 868
CseI GACGC 1 cut(s) 641
Csp6I GTAC 3 cut(s) 531, 729, 795
CviAII CATG 2 cut(s) 200, 568
CviQI GTAC 3 cut(s) 531, 729, 795
DdeI CTNAG 3 cut(s) 29, 175, 892
DpnI GATC 4 cut(s) 27, 88, 379, 509
DpnII GATC 4 cut(s) 25, 86, 377, 507
DrdI GACNNNNNNGTC 1 cut(s) 649
DriI GACNNNNNGTC 1 cut(s) 709
DseDI GACNNNNNNGTC 1 cut(s) 649
Eam1104I CTCTTC 1 cut(s) 450
Eam1105I GACNNNNNGTC 1 cut(s) 709
EarI CTCTTC 1 cut(s) 450
EciI GGCGGA 1 cut(s) 741
Ecl136II GAGCTC 1 cut(s) 739
Eco130I CCWWGG 1 cut(s) 422
Eco24I GRGCYC 1 cut(s) 741
Eco31I GGTCTC 1 cut(s) 283
Eco47I GGWCC 2 cut(s) 335, 868
Eco53kI GAGCTC 1 cut(s) 739
Eco57I CTGAAG 2 cut(s) 67, 744
EcoICRI GAGCTC 1 cut(s) 739
EcoRII CCWGG 1 cut(s) 523
EcoT14I CCWWGG 1 cut(s) 422
EcoT38I GRGCYC 1 cut(s) 741
ErhI CCWWGG 1 cut(s) 422
Esp3I CGTCTC 2 cut(s) 521, 624
FaeI CATG 2 cut(s) 203, 571
FaiI YATR 7 cut(s) 201, 271, 489, 569, 851, 853, 855
FalI AAGNNNNNCTT 2 cut(s) 425, 457
FaqI GGGAC 1 cut(s) 321
FatI CATG 2 cut(s) 199, 567
Fnu4HI GCNGC 3 cut(s) 111, 474, 661
FokI GGATG 1 cut(s) 141
FriOI GRGCYC 1 cut(s) 741
Fsp4HI GCNGC 3 cut(s) 111, 474, 661
FspBI CTAG 3 cut(s) 147, 416, 582
GluI GCNGC 3 cut(s) 111, 474, 661
GsuI CTGGAG 1 cut(s) 307
HgaI GACGC 1 cut(s) 641
Hin1II CATG 2 cut(s) 203, 571
HincII GTYRAC 1 cut(s) 605
HindII GTYRAC 1 cut(s) 605
HinfI GANTC 2 cut(s) 4, 185
HphI GGTGA 2 cut(s) 227, 872
Hpy166II GTNNAC 1 cut(s) 605
Hpy188I TCNGA 3 cut(s) 86, 190, 618
Hpy188III TCNNGA 5 cut(s) 147, 276, 547, 627, 969
Hpy8I GTNNAC 1 cut(s) 605
Hpy99I CGWCG 5 cut(s) 579, 622, 704, 707, 736
HpyAV CCTTC 3 cut(s) 377, 451, 765
HpyCH4III ACNGT 1 cut(s) 646
HpyCH4IV ACGT 3 cut(s) 561, 601, 620
HpyCH4V TGCA 2 cut(s) 803, 829
HpyF10VI GCNNNNNNNGC 1 cut(s) 482
HpyF3I CTNAG 3 cut(s) 29, 175, 892
HpySE526I ACGT 3 cut(s) 561, 601, 620
Hsp92II CATG 2 cut(s) 203, 571
Kzo9I GATC 4 cut(s) 25, 86, 377, 507
LmnI GCTCC 3 cut(s) 316, 736, 962
LpnPI CCDG 8 cut(s) 271, 331, 341, 366, 510, 537, 782, 792
Lsp1109I GCAGC 2 cut(s) 97, 485
LweI GCATC 2 cut(s) 292, 812
MaeI CTAG 3 cut(s) 147, 416, 582
MaeII ACGT 3 cut(s) 561, 601, 620
MalI GATC 4 cut(s) 27, 88, 379, 509
MboI GATC 4 cut(s) 25, 86, 377, 507
MboII GAAGA 8 cut(s) 203, 311, 464, 467, 701, 704, 750, 931
MflI RGATCY 2 cut(s) 25, 86
MhlI GDGCHC 1 cut(s) 741
MluCI AATT 2 cut(s) 255, 784
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 3 cut(s) 168, 641, 940
MseI TTAA 5 cut(s) 233, 258, 408, 429, 783
MspA1I CMGCKG 1 cut(s) 716
MspR9I CCNGG 1 cut(s) 525
MvaI CCWGG 1 cut(s) 525
MwoI GCNNNNNNNGC 1 cut(s) 482
NdeII GATC 4 cut(s) 25, 86, 377, 507
NlaIII CATG 2 cut(s) 203, 571
NlaIV GGNNCC 1 cut(s) 337
PfeI GAWTC 1 cut(s) 4
PflFI GACNNNGTC 2 cut(s) 600, 622
PkrI GCNGC 3 cut(s) 112, 475, 662
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
Psp124BI GAGCTC 1 cut(s) 741
Psp6I CCWGG 1 cut(s) 523
PspGI CCWGG 1 cut(s) 523
PspN4I GGNNCC 1 cut(s) 337
PspPI GGNCC 2 cut(s) 335, 868
PsuI RGATCY 2 cut(s) 25, 86
PsyI GACNNNGTC 2 cut(s) 600, 622
PvuII CAGCTG 1 cut(s) 716
RsaI GTAC 3 cut(s) 532, 730, 796
RsaNI GTAC 3 cut(s) 531, 729, 795
SacI GAGCTC 1 cut(s) 741
SaqAI TTAA 5 cut(s) 233, 258, 408, 429, 783
SatI GCNGC 3 cut(s) 111, 474, 661
Sau3AI GATC 4 cut(s) 25, 86, 377, 507
Sau96I GGNCC 2 cut(s) 335, 868
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 525
SduI GDGCHC 1 cut(s) 741
SfaNI GCATC 2 cut(s) 292, 812
SinI GGWCC 2 cut(s) 335, 868
SmlI CTYRAG 2 cut(s) 17, 311
SmoI CTYRAG 2 cut(s) 17, 311
Sse9I AATT 2 cut(s) 255, 784
SsiI CCGC 2 cut(s) 661, 752
SspMI CTAG 3 cut(s) 147, 416, 582
SstI GAGCTC 1 cut(s) 741
StyD4I CCNGG 1 cut(s) 523
StyI CCWWGG 1 cut(s) 422
TaaI ACNGT 1 cut(s) 646
TaiI ACGT 3 cut(s) 564, 604, 623
TaqI TCGA 2 cut(s) 481, 574
TasI AATT 2 cut(s) 255, 784
TauI GCSGC 1 cut(s) 663
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 5 cut(s) 233, 258, 408, 429, 783
Tru9I TTAA 5 cut(s) 233, 258, 408, 429, 783
TscAI CASTG 4 cut(s) 112, 290, 827, 904
TseI GCWGC 2 cut(s) 110, 473
TspDTI ATGAA 5 cut(s) 17, 210, 670, 702, 932
TspGWI ACGGA 3 cut(s) 461, 592, 749
TspRI CASTG 4 cut(s) 112, 290, 827, 904
Tth111I GACNNNGTC 2 cut(s) 600, 622
VpaK11BI GGWCC 2 cut(s) 335, 868
XbaI TCTAGA 1 cut(s) 146
XspI CTAG 3 cut(s) 147, 416, 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.