Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

6116024 .. 6117041

Gene Structure 1018 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G18450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGAAGAAGAGCAACCTCCGGCCAAGAAACGAAACATGGGGAGATCTAGAAAAGGTTGCATGAAAGGTAAAGGCGGTCCAGAGAACGCCACGTGTACTTTCCGTGGAGTTAGGCAACGGACTTGGGGTAAATGGGTGGCTGAGATCCGTGAGCCTAACCGTGGGACTCGTCTCTGGCTCGGCACGTTTAATACCTCGGTCGAGGCCGCCATGGCTTACGATGAAGCCGCTAAGAAACTCTATGGACACGAGGCTAAACTCAACTTGGTGCACCCACAACAACAACAACAAGTAGTAGTGAACAGAAACTTGTCTTTTTCTGGCCACGGGTCGGGTTCTTGGGCTTATAATAAGAAGCTCGATATGGTTCATGGGTTGGACCTTGGTCTCGGCCAGGCAAGTTGTTCACGAGGTTCTTGCTCAGAGAGATCGAGTTTTCTACAAGAAGATGATGATCATAGTCATAATCGATGTTCGTCTTCAAGTGGTTCGAATCTTTGTTGGTTATTACCTAAACAAAGTGATTCACAAGATCAAGAGACCGTTAATGCTACGACTAGTTATGGCGGTGAAGGCGGTGGTGGCTCTACGTTAACGTTTTCGACCAATTTGAAACCAAAGAATTTGATGAGTCAGAATTATGGATTATACAATGGAGCTTGGTCTAGGTTTCTTGTGGGGCAAGAAAAGAAGACGGAACATGACGTGTCATCGTCGTGTGGATCGTCGGACAACAAGGAGAGTATGTTGGTTCCTAGTTGCGGCGGAGAGAGGATGCATAGGCCGGAGTTGGAAGAGCGAACAGGATATTTGGAAATGGATGATCTTTTGGAGATTGATGATTTAGGTTTGTTGATTGGCAAAAATGGAGATTTCAAGAATTGGTGTTGTGAAGAGTTTCAACATCCATGGAATTGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

307

Amino Acids

34.23

Weight (kDa)

6.32

Isoelectric Point (pI)

53.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	34 - 83	3.9e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	348
AciI	CCGC	7 cut(s)	75, 207, 228, 567, 576, 762, 765
AclI	AACGTT	1 cut(s)	596
AclWI	GGATC	2 cut(s)	139, 730
AcoI	YGGCCR	3 cut(s)	21, 322, 391
AcsI	RAATTY	1 cut(s)	622
AcvI	CACGTG	1 cut(s)	93
AfaI	GTAC	1 cut(s)	97
AfiI	CCNNNNNNNGG	3 cut(s)	161, 331, 761
AflIII	ACRYGT	2 cut(s)	92, 705
AgsI	TTSAA	4 cut(s)	483, 613, 877, 902
AhlI	ACTAGT	1 cut(s)	557
AjiI	CACGTC	1 cut(s)	706
AjnI	CCWGG	1 cut(s)	393
AluBI	AGCT	2 cut(s)	358, 659
AluI	AGCT	2 cut(s)	358, 659
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	3 cut(s)	176, 392, 533
Alw44I	GTGCAC	1 cut(s)	269
AlwI	GGATC	2 cut(s)	139, 730
AoxI	GGCC	5 cut(s)	21, 204, 322, 391, 782
ApaLI	GTGCAC	1 cut(s)	269
ApoI	RAATTY	1 cut(s)	622
Asp700I	GAANNNNTTC	2 cut(s)	897, 917
AspS9I	GGNCC	2 cut(s)	77, 379
AsuHPI	GGTGA	1 cut(s)	581
AsuII	TTCGAA	1 cut(s)	491
AvaII	GGWCC	2 cut(s)	77, 379
BaeGI	GKGCMC	1 cut(s)	273
BalI	TGGCCA	1 cut(s)	324
BauI	CACGAG	2 cut(s)	248, 408
BbrPI	CACGTG	1 cut(s)	93
BbsI	GAAGAC	2 cut(s)	471, 698
Bbv12I	GWGCWC	1 cut(s)	273
BcgI	CGANNNNNNTGC	2 cut(s)	399, 433
BciT130I	CCWGG	1 cut(s)	395
BclI	TGATCA	1 cut(s)	454
BcoDI	GTCTC	3 cut(s)	176, 392, 533
BcuI	ACTAGT	1 cut(s)	557
BfaI	CTAG	4 cut(s)	48, 558, 666, 756
BglI	GCCNNNNNGGC	1 cut(s)	212
BglII	AGATCT	1 cut(s)	44
BisI	GCNGC	3 cut(s)	207, 228, 763
BlsI	GCNGC	3 cut(s)	208, 229, 764
Bme1390I	CCNGG	1 cut(s)	395
Bme18I	GGWCC	2 cut(s)	77, 379
BmgBI	CACGTC	1 cut(s)	706
BmgT120I	GGNCC	2 cut(s)	77, 379
BmiI	GGNNCC	1 cut(s)	753
BmrFI	CCNGG	1 cut(s)	395
BmsI	GCATC	1 cut(s)	765
BoxI	GACNNNNGTC	1 cut(s)	384
BpiI	GAAGAC	2 cut(s)	471, 698
Bpu14I	TTCGAA	1 cut(s)	491
Bsa29I	ATCGAT	1 cut(s)	469
BsaAI	YACGTR	1 cut(s)	93
BsaBI	GATNNNNATC	1 cut(s)	453
BsaI	GGTCTC	2 cut(s)	392, 533
BsaJI	CCNNGG	7 cut(s)	103, 160, 195, 210, 325, 382, 908
BsaXI	ACNNNNNCTCC	2 cut(s)	731, 761
Bsc4I	CCNNNNNNNGG	3 cut(s)	161, 331, 761
Bse8I	GATNNNNATC	1 cut(s)	453
BseBI	CCWGG	1 cut(s)	395
BseCI	ATCGAT	1 cut(s)	469
BseDI	CCNNGG	7 cut(s)	103, 160, 195, 210, 325, 382, 908
BseGI	GGATG	3 cut(s)	780, 826, 904
BseJI	GATNNNNATC	1 cut(s)	453
BseLI	CCNNNNNNNGG	3 cut(s)	161, 331, 761
BseMII	CTCAG	2 cut(s)	132, 435
BseSI	GKGCMC	1 cut(s)	273
Bsh1285I	CGRYCG	1 cut(s)	201
BshFI	GGCC	5 cut(s)	23, 206, 324, 393, 784
BshVI	ATCGAT	1 cut(s)	469
BsiEI	CGRYCG	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	273
BsiSI	CCGG	2 cut(s)	20, 785
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	3 cut(s)	161, 331, 761
BsmAI	GTCTC	3 cut(s)	176, 392, 533
BsmBI	CGTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	178
BsnI	GGCC	5 cut(s)	23, 206, 324, 393, 784
Bso31I	GGTCTC	2 cut(s)	392, 533
Bsp119I	TTCGAA	1 cut(s)	491
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	7 cut(s)	44, 144, 428, 454, 532, 722, 823
Bsp19I	CCATGG	2 cut(s)	210, 908
BspACI	CCGC	7 cut(s)	75, 207, 228, 567, 576, 762, 765
BspANI	GGCC	5 cut(s)	23, 206, 324, 393, 784
BspCNI	CTCAG	2 cut(s)	133, 434
BspDI	ATCGAT	1 cut(s)	469
BspLI	GGNNCC	1 cut(s)	753
BspPI	GGATC	2 cut(s)	139, 730
BspQI	GCTCTTC	2 cut(s)	3, 789
BspT104I	TTCGAA	1 cut(s)	491
BspTNI	GGTCTC	2 cut(s)	392, 533
BssECI	CCNNGG	7 cut(s)	103, 160, 195, 210, 325, 382, 908
BssMI	GATC	7 cut(s)	44, 144, 428, 454, 532, 722, 823
BssSI	CACGAG	2 cut(s)	248, 408
BssT1I	CCWWGG	3 cut(s)	210, 382, 908
Bst2BI	CACGAG	2 cut(s)	248, 408
Bst2UI	CCWGG	1 cut(s)	395
Bst4CI	ACNGT	2 cut(s)	161, 544
Bst6I	CTCTTC	3 cut(s)	3, 789, 888
BstBAI	YACGTR	1 cut(s)	93
BstBI	TTCGAA	1 cut(s)	491
BstDEI	CTNAG	3 cut(s)	141, 231, 421
BstDSI	CCRYGG	5 cut(s)	103, 160, 210, 325, 908
BstF5I	GGATG	3 cut(s)	780, 826, 904
BstKTI	GATC	7 cut(s)	47, 147, 431, 457, 535, 725, 826
BstMAI	GTCTC	3 cut(s)	176, 392, 533
BstMBI	GATC	7 cut(s)	44, 144, 428, 454, 532, 722, 823
BstMCI	CGRYCG	1 cut(s)	201
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 573, 582
BstNI	CCWGG	1 cut(s)	395
BstPAI	GACNNNNGTC	1 cut(s)	384
BstSCI	CCNGG	1 cut(s)	393
BstSLI	GKGCMC	1 cut(s)	273
BstV2I	GAAGAC	2 cut(s)	471, 698
BstX2I	RGATCY	2 cut(s)	44, 144
BstXI	CCANNNNNNTGG	1 cut(s)	915
BstYI	RGATCY	2 cut(s)	44, 144
Bsu15I	ATCGAT	1 cut(s)	469
BsuRI	GGCC	5 cut(s)	23, 206, 324, 393, 784
BsuTUI	ATCGAT	1 cut(s)	469
BtgI	CCRYGG	5 cut(s)	103, 160, 210, 325, 908
BtrI	CACGTC	1 cut(s)	706
BtsCI	GGATG	3 cut(s)	780, 826, 904
Cfr13I	GGNCC	2 cut(s)	77, 379
ClaI	ATCGAT	1 cut(s)	469
Csp6I	GTAC	1 cut(s)	96
CviAII	CATG	6 cut(s)	37, 61, 211, 371, 701, 909
CviQI	GTAC	1 cut(s)	96
DdeI	CTNAG	3 cut(s)	141, 231, 421
DpnI	GATC	7 cut(s)	46, 146, 430, 456, 534, 724, 825
DpnII	GATC	7 cut(s)	44, 144, 428, 454, 532, 722, 823
EaeI	YGGCCR	3 cut(s)	21, 322, 391
Eam1104I	CTCTTC	3 cut(s)	3, 789, 888
EarI	CTCTTC	3 cut(s)	3, 789, 888
EciI	GGCGGA	1 cut(s)	780
Eco130I	CCWWGG	3 cut(s)	210, 382, 908
Eco31I	GGTCTC	2 cut(s)	392, 533
Eco47I	GGWCC	2 cut(s)	77, 379
Eco72I	CACGTG	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	393
EcoT14I	CCWWGG	3 cut(s)	210, 382, 908
EcoT22I	ATGCAT	1 cut(s)	780
ErhI	CCWWGG	3 cut(s)	210, 382, 908
Esp3I	CGTCTC	1 cut(s)	176
FaeI	CATG	6 cut(s)	40, 64, 214, 374, 704, 912
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	6 cut(s)	36, 60, 210, 370, 700, 908
FbaI	TGATCA	1 cut(s)	454
Fnu4HI	GCNGC	3 cut(s)	207, 228, 763
FokI	GGATG	3 cut(s)	787, 833, 891
Fsp4HI	GCNGC	3 cut(s)	207, 228, 763
FspBI	CTAG	4 cut(s)	48, 558, 666, 756
GluI	GCNGC	3 cut(s)	207, 228, 763
HaeIII	GGCC	5 cut(s)	23, 206, 324, 393, 784
HapII	CCGG	2 cut(s)	20, 785
Hin1II	CATG	6 cut(s)	40, 64, 214, 374, 704, 912
HincII	GTYRAC	1 cut(s)	594
HindII	GTYRAC	1 cut(s)	594
HinfI	GANTC	4 cut(s)	166, 493, 524, 631
HpaI	GTTAAC	1 cut(s)	594
HpaII	CCGG	2 cut(s)	20, 785
HphI	GGTGA	1 cut(s)	581
Hpy166II	GTNNAC	5 cut(s)	96, 271, 301, 407, 594
Hpy188I	TCNGA	4 cut(s)	424, 636, 730, 923
Hpy188III	TCNNGA	5 cut(s)	48, 80, 408, 536, 877
Hpy8I	GTNNAC	5 cut(s)	96, 271, 301, 407, 594
Hpy99I	CGWCG	2 cut(s)	718, 730
HpyAV	CCTTC	1 cut(s)	566
HpyCH4III	ACNGT	2 cut(s)	161, 544
HpyCH4IV	ACGT	5 cut(s)	92, 185, 590, 596, 705
HpyCH4V	TGCA	3 cut(s)	60, 271, 778
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 573, 582
HpyF3I	CTNAG	3 cut(s)	141, 231, 421
HpySE526I	ACGT	5 cut(s)	92, 185, 590, 596, 705
Hsp92II	CATG	6 cut(s)	40, 64, 214, 374, 704, 912
Ksp22I	TGATCA	1 cut(s)	454
KspAI	GTTAAC	1 cut(s)	594
Kzo9I	GATC	7 cut(s)	44, 144, 428, 454, 532, 722, 823
LguI	GCTCTTC	2 cut(s)	3, 789
LmnI	GCTCC	1 cut(s)	656
LpnPI	CCDG	8 cut(s)	33, 93, 160, 306, 380, 407, 789, 798
LweI	GCATC	1 cut(s)	765
MaeI	CTAG	4 cut(s)	48, 558, 666, 756
MaeII	ACGT	5 cut(s)	92, 185, 590, 596, 705
MalI	GATC	7 cut(s)	46, 146, 430, 456, 534, 724, 825
MboI	GATC	7 cut(s)	44, 144, 428, 454, 532, 722, 823
MboII	GAAGA	7 cut(s)	17, 20, 458, 471, 703, 806, 905
MflI	RGATCY	2 cut(s)	44, 144
MhlI	GDGCHC	1 cut(s)	273
MlsI	TGGCCA	1 cut(s)	324
MluCI	AATT	5 cut(s)	607, 622, 637, 880, 913
MluNI	TGGCCA	1 cut(s)	324
MlyI	GAGTC	2 cut(s)	160, 640
MmeI	TCCRAC	3 cut(s)	357, 708, 771
MnlI	CCTC	6 cut(s)	27, 196, 205, 244, 404, 765
Mox20I	TGGCCA	1 cut(s)	324
Mph1103I	ATGCAT	1 cut(s)	780
MroXI	GAANNNNTTC	2 cut(s)	897, 917
MscI	TGGCCA	1 cut(s)	324
MseI	TTAA	3 cut(s)	189, 546, 593
MslI	CAYNNNNRTG	1 cut(s)	715
Msp20I	TGGCCA	1 cut(s)	324
MspI	CCGG	2 cut(s)	20, 785
MspR9I	CCNGG	1 cut(s)	395
MvaI	CCWGG	1 cut(s)	395
MwoI	GCNNNNNNNGC	3 cut(s)	212, 573, 582
NcoI	CCATGG	2 cut(s)	210, 908
NdeII	GATC	7 cut(s)	44, 144, 428, 454, 532, 722, 823
NlaIII	CATG	6 cut(s)	40, 64, 214, 374, 704, 912
NlaIV	GGNNCC	1 cut(s)	753
NmeAIII	GCCGAG	2 cut(s)	159, 369
NsiI	ATGCAT	1 cut(s)	780
NspV	TTCGAA	1 cut(s)	491
PciSI	GCTCTTC	2 cut(s)	3, 789
PcsI	WCGNNNNNNNCGW	1 cut(s)	722
PdmI	GAANNNNTTC	2 cut(s)	897, 917
PfeI	GAWTC	2 cut(s)	493, 524
PkrI	GCNGC	3 cut(s)	208, 229, 764
PleI	GAGTC	2 cut(s)	160, 639
PmaCI	CACGTG	1 cut(s)	93
PmlI	CACGTG	1 cut(s)	93
PpsI	GAGTC	2 cut(s)	160, 639
Ppu21I	YACGTR	1 cut(s)	93
PshAI	GACNNNNGTC	1 cut(s)	384
PsiI	TTATAA	1 cut(s)	348
Psp1406I	AACGTT	1 cut(s)	596
Psp6I	CCWGG	1 cut(s)	393
PspCI	CACGTG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	393
PspN4I	GGNNCC	1 cut(s)	753
PspPI	GGNCC	2 cut(s)	77, 379
PsuI	RGATCY	2 cut(s)	44, 144
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
RseI	CAYNNNNRTG	1 cut(s)	715
SapI	GCTCTTC	2 cut(s)	3, 789
SaqAI	TTAA	3 cut(s)	189, 546, 593
SatI	GCNGC	3 cut(s)	207, 228, 763
Sau3AI	GATC	7 cut(s)	44, 144, 428, 454, 532, 722, 823
Sau96I	GGNCC	2 cut(s)	77, 379
SchI	GAGTC	2 cut(s)	160, 640
ScrFI	CCNGG	1 cut(s)	395
SduI	GDGCHC	1 cut(s)	273
SfaNI	GCATC	1 cut(s)	765
SfuI	TTCGAA	1 cut(s)	491
SinI	GGWCC	2 cut(s)	77, 379
SmiMI	CAYNNNNRTG	1 cut(s)	715
SpeI	ACTAGT	1 cut(s)	557
Sse9I	AATT	5 cut(s)	607, 622, 637, 880, 913
SsiI	CCGC	7 cut(s)	75, 207, 228, 567, 576, 762, 765
SspMI	CTAG	4 cut(s)	48, 558, 666, 756
StyD4I	CCNGG	1 cut(s)	393
StyI	CCWWGG	3 cut(s)	210, 382, 908
TaaI	ACNGT	2 cut(s)	161, 544
TaiI	ACGT	5 cut(s)	95, 188, 593, 599, 708
TaqI	TCGA	6 cut(s)	201, 360, 431, 469, 491, 602
TaqII	GACCGA	1 cut(s)	187
TasI	AATT	5 cut(s)	607, 622, 637, 880, 913
TatI	WGTACW	1 cut(s)	95
TauI	GCSGC	3 cut(s)	209, 230, 765
TfiI	GAWTC	2 cut(s)	493, 524
Tru1I	TTAA	3 cut(s)	189, 546, 593
Tru9I	TTAA	3 cut(s)	189, 546, 593
TspDTI	ATGAA	3 cut(s)	77, 237, 359
TspGWI	ACGGA	4 cut(s)	92, 133, 137, 710
VneI	GTGCAC	1 cut(s)	269
VpaK11BI	GGWCC	2 cut(s)	77, 379
XapI	RAATTY	1 cut(s)	622
XbaI	TCTAGA	1 cut(s)	47
XmnI	GAANNNNTTC	2 cut(s)	897, 917
XspI	CTAG	4 cut(s)	48, 558, 666, 756
Zsp2I	ATGCAT	1 cut(s)	780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.