Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

7258037 .. 7259568

Gene Structure 1532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G21960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGATGCATCCCCAAAGTACACAGGTGTACGGAAGAGGAAGTGGGGAAAATGGGTGGCTGAGATTCGTCTCCCCAACAGCCGTGACAGGATCTGGTTAGGCTCTTTCGACTCTGCTGAGAAGGCGGCGCGTGCTTTCGACGCGGCTCTTTACTGTCTTCGTGGCCCCGGAGCACGCTTCAACTTCCCCGACAATCCTCCGGAGATTCCCGGTGGTCGTTCTCTGACGCCGCAGCAGATTCAGGTCGTAGCTAGCCGTTTCGCCTGCGAGGAGGAGCTACTACCACCGGAACAACATCATCCGTCACCGCCACGTGGCGACCATAATACCGAGGAAGAAGTGATAATTTCGGCACGTGGGGAAATTAATAGTGGTAGTGGTGGGCCTACGTTAGGGCAAGTTGGGGAAGATAATAACAACGAGGGTAATAGTAATGACACGTCGTCGTATTGGCCTTTAATATGGGAGGAGGAGAATTTTGTAGGTCCTCCTAACTCAGATCATGAGTTCGGTTTTTTCACAGATGATTCAACCAATTTGTACTTCCCGACACAACAACAACAACAACATCAGCTCTCGTCTGATTTTTACTATGATGGAGCTTGTGAAGATGATTTCTCTCATTACAATATTAACCTTTGGAATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002213 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009611 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

216

Amino Acids

24.4

Weight (kDa)

4.64

Isoelectric Point (pI)

58.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	5 - 55	8e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	130, 143
AccIII	TCCGGA	1 cut(s)	199
AciI	CCGC	4 cut(s)	125, 143, 230, 308
AclWI	GGATC	1 cut(s)	98
AcsI	RAATTY	2 cut(s)	475, 643
AcvI	CACGTG	2 cut(s)	314, 356
AcyI	GRCGYC	1 cut(s)	227
AfaI	GTAC	3 cut(s)	20, 30, 542
AfiI	CCNNNNNNNGG	2 cut(s)	314, 392
AflIII	ACRYGT	1 cut(s)	438
AgsI	TTSAA	2 cut(s)	181, 531
AhdI	GACNNNNNGTC	1 cut(s)	442
AjiI	CACGTC	1 cut(s)	441
AjuI	GAANNNNNNNTTGG	2 cut(s)	527, 559
AluBI	AGCT	4 cut(s)	251, 277, 574, 602
AluI	AGCT	4 cut(s)	251, 277, 574, 602
Alw21I	GWGCWC	1 cut(s)	175
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	1 cut(s)	98
AlwNI	CAGNNNCTG	1 cut(s)	93
Aor13HI	TCCGGA	1 cut(s)	199
AoxI	GGCC	3 cut(s)	163, 383, 452
ApeKI	GCWGC	1 cut(s)	232
ApoI	RAATTY	2 cut(s)	475, 643
AseI	ATTAAT	1 cut(s)	366
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	3 cut(s)	164, 383, 485
AsuC2I	CCSGG	2 cut(s)	168, 210
AsuHPI	GGTGA	1 cut(s)	297
AsuNHI	GCTAGC	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	485
BbrPI	CACGTG	2 cut(s)	314, 356
BbsI	GAAGAC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	1 cut(s)	590
BceAI	ACGGC	2 cut(s)	66, 240
BcnI	CCSGG	2 cut(s)	168, 210
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	1 cut(s)	252
BisI	GCNGC	4 cut(s)	126, 144, 230, 233
BlsI	GCNGC	4 cut(s)	127, 145, 231, 234
Bme1390I	CCNGG	2 cut(s)	168, 210
Bme18I	GGWCC	1 cut(s)	485
BmeRI	GACNNNNNGTC	1 cut(s)	442
BmgBI	CACGTC	1 cut(s)	441
BmgT120I	GGNCC	3 cut(s)	164, 383, 485
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	2 cut(s)	168, 210
BmsI	GCATC	1 cut(s)	17
BmtI	GCTAGC	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	149
BpuMI	CCSGG	2 cut(s)	168, 210
BsaAI	YACGTR	2 cut(s)	314, 356
BsaHI	GRCGYC	1 cut(s)	227
BsaJI	CCNNGG	2 cut(s)	166, 330
BsaWI	WCCGGW	2 cut(s)	199, 286
Bsc4I	CCNNNNNNNGG	2 cut(s)	314, 392
BseAI	TCCGGA	1 cut(s)	199
BseDI	CCNNGG	2 cut(s)	166, 330
BseGI	GGATG	3 cut(s)	8, 10, 298
BseLI	CCNNNNNNNGG	2 cut(s)	314, 392
BseMII	CTCAG	3 cut(s)	51, 108, 510
BseRI	GAGGAG	4 cut(s)	284, 287, 482, 485
BseXI	GCAGC	1 cut(s)	244
Bsh1236I	CGCG	2 cut(s)	130, 143
BshFI	GGCC	3 cut(s)	165, 385, 454
BsiHKAI	GWGCWC	1 cut(s)	175
BsiSI	CCGG	4 cut(s)	168, 200, 210, 287
BslI	CCNNNNNNNGG	2 cut(s)	314, 392
BsmAI	GTCTC	1 cut(s)	74
BsmBI	CGTCTC	1 cut(s)	74
BsnI	GGCC	3 cut(s)	165, 385, 454
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp13I	TCCGGA	1 cut(s)	199
Bsp143I	GATC	2 cut(s)	90, 499
BspACI	CCGC	4 cut(s)	125, 143, 230, 308
BspANI	GGCC	3 cut(s)	165, 385, 454
BspCNI	CTCAG	3 cut(s)	52, 109, 509
BspEI	TCCGGA	1 cut(s)	199
BspFNI	CGCG	2 cut(s)	130, 143
BspHI	TCATGA	1 cut(s)	502
BspLI	GGNNCC	1 cut(s)	166
BspOI	GCTAGC	1 cut(s)	255
BspPI	GGATC	1 cut(s)	98
BssECI	CCNNGG	2 cut(s)	166, 330
BssMI	GATC	2 cut(s)	90, 499
BssNI	GRCGYC	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	155
Bst6I	CTCTTC	1 cut(s)	29
BstACI	GRCGYC	1 cut(s)	227
BstBAI	YACGTR	2 cut(s)	314, 356
BstC8I	GCNNGC	4 cut(s)	132, 175, 253, 265
BstDEI	CTNAG	3 cut(s)	60, 117, 496
BstENI	CCTNNNNNAGG	1 cut(s)	390
BstF5I	GGATG	3 cut(s)	8, 10, 298
BstFNI	CGCG	2 cut(s)	130, 143
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	2 cut(s)	93, 502
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	2 cut(s)	90, 499
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 131, 140
BstSCI	CCNGG	2 cut(s)	166, 208
BstUI	CGCG	2 cut(s)	130, 143
BstV1I	GCAGC	1 cut(s)	244
BstV2I	GAAGAC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
BsuRI	GGCC	3 cut(s)	165, 385, 454
BtrI	CACGTC	1 cut(s)	441
BtsCI	GGATG	3 cut(s)	8, 10, 298
Cac8I	GCNNGC	4 cut(s)	132, 175, 253, 265
CaiI	CAGNNNCTG	1 cut(s)	93
CciI	TCATGA	1 cut(s)	502
CfoI	GCGC	1 cut(s)	130
Cfr13I	GGNCC	3 cut(s)	164, 383, 485
CseI	GACGC	2 cut(s)	149, 235
Csp6I	GTAC	3 cut(s)	19, 29, 541
CviAII	CATG	1 cut(s)	503
CviQI	GTAC	3 cut(s)	19, 29, 541
DdeI	CTNAG	3 cut(s)	60, 117, 496
DpnI	GATC	2 cut(s)	92, 501
DpnII	GATC	2 cut(s)	90, 499
DriI	GACNNNNNGTC	1 cut(s)	442
Eam1104I	CTCTTC	1 cut(s)	29
Eam1105I	GACNNNNNGTC	1 cut(s)	442
EarI	CTCTTC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	485
Eco72I	CACGTG	2 cut(s)	314, 356
EcoNI	CCTNNNNNAGG	1 cut(s)	390
EcoO109I	RGGNCCY	1 cut(s)	485
EcoT22I	ATGCAT	1 cut(s)	10
Esp3I	CGTCTC	1 cut(s)	74
FaeI	CATG	1 cut(s)	506
FaiI	YATR	4 cut(s)	324, 463, 504, 594
FatI	CATG	1 cut(s)	502
Fnu4HI	GCNGC	4 cut(s)	126, 144, 230, 233
FokI	GGATG	2 cut(s)	17, 285
Fsp4HI	GCNGC	4 cut(s)	126, 144, 230, 233
FspBI	CTAG	1 cut(s)	252
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	4 cut(s)	126, 144, 230, 233
HaeIII	GGCC	3 cut(s)	165, 385, 454
HapII	CCGG	4 cut(s)	168, 200, 210, 287
HgaI	GACGC	2 cut(s)	149, 235
HhaI	GCGC	1 cut(s)	130
Hin1I	GRCGYC	1 cut(s)	227
Hin1II	CATG	1 cut(s)	506
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HinfI	GANTC	5 cut(s)	64, 110, 205, 238, 527
HpaII	CCGG	4 cut(s)	168, 200, 210, 287
HphI	GGTGA	1 cut(s)	297
Hpy166II	GTNNAC	2 cut(s)	21, 29
Hpy188I	TCNGA	4 cut(s)	225, 499, 583, 650
Hpy188III	TCNNGA	3 cut(s)	200, 503, 547
Hpy8I	GTNNAC	2 cut(s)	21, 29
Hpy99I	CGWCG	3 cut(s)	143, 445, 448
HpyAV	CCTTC	1 cut(s)	115
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4IV	ACGT	4 cut(s)	313, 355, 389, 440
HpyCH4V	TGCA	1 cut(s)	8
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 131, 140
HpyF3I	CTNAG	3 cut(s)	60, 117, 496
HpySE526I	ACGT	4 cut(s)	313, 355, 389, 440
Hsp92I	GRCGYC	1 cut(s)	227
Hsp92II	CATG	1 cut(s)	506
HspAI	GCGC	1 cut(s)	128
Kpn2I	TCCGGA	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	90, 499
LmnI	GCTCC	3 cut(s)	170, 274, 599
LpnPI	CCDG	9 cut(s)	9, 73, 79, 181, 213, 223, 227, 277, 300
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	1 cut(s)	17
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	4 cut(s)	313, 355, 389, 440
MaeIII	GTNAC	2 cut(s)	83, 303
MalI	GATC	2 cut(s)	92, 501
MboI	GATC	2 cut(s)	90, 499
MboII	GAAGA	5 cut(s)	46, 149, 347, 419, 620
MflI	RGATCY	1 cut(s)	90
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	5 cut(s)	345, 363, 475, 535, 643
MlyI	GAGTC	1 cut(s)	104
MnlI	CCTC	9 cut(s)	30, 207, 262, 265, 325, 415, 460, 463, 498
Mph1103I	ATGCAT	1 cut(s)	10
MroI	TCCGGA	1 cut(s)	199
MseI	TTAA	3 cut(s)	366, 458, 633
MspI	CCGG	4 cut(s)	168, 200, 210, 287
MspR9I	CCNGG	2 cut(s)	168, 210
MvnI	CGCG	2 cut(s)	130, 143
MwoI	GCNNNNNNNGC	3 cut(s)	122, 131, 140
NciI	CCSGG	2 cut(s)	168, 210
NdeII	GATC	2 cut(s)	90, 499
NheI	GCTAGC	1 cut(s)	251
NlaIII	CATG	1 cut(s)	506
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	2 cut(s)	83, 303
NsiI	ATGCAT	1 cut(s)	10
PagI	TCATGA	1 cut(s)	502
PfeI	GAWTC	4 cut(s)	64, 205, 238, 527
PkrI	GCNGC	4 cut(s)	127, 145, 231, 234
PleI	GAGTC	1 cut(s)	104
PmaCI	CACGTG	2 cut(s)	314, 356
PmlI	CACGTG	2 cut(s)	314, 356
PpsI	GAGTC	1 cut(s)	104
Ppu21I	YACGTR	2 cut(s)	314, 356
PpuMI	RGGWCCY	1 cut(s)	485
PshBI	ATTAAT	1 cut(s)	366
Psp5II	RGGWCCY	1 cut(s)	485
PspCI	CACGTG	2 cut(s)	314, 356
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	3 cut(s)	164, 383, 485
PspPPI	RGGWCCY	1 cut(s)	485
PstNI	CAGNNNCTG	1 cut(s)	93
PsuI	RGATCY	1 cut(s)	90
RsaI	GTAC	3 cut(s)	20, 30, 542
RsaNI	GTAC	3 cut(s)	19, 29, 541
SaqAI	TTAA	3 cut(s)	366, 458, 633
SatI	GCNGC	4 cut(s)	126, 144, 230, 233
Sau3AI	GATC	2 cut(s)	90, 499
Sau96I	GGNCC	3 cut(s)	164, 383, 485
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	2 cut(s)	168, 210
SduI	GDGCHC	1 cut(s)	175
SfaNI	GCATC	1 cut(s)	17
SinI	GGWCC	1 cut(s)	485
Sse9I	AATT	5 cut(s)	345, 363, 475, 535, 643
SsiI	CCGC	4 cut(s)	125, 143, 230, 308
SspI	AATATT	1 cut(s)	631
SspMI	CTAG	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	166, 208
TaaI	ACNGT	1 cut(s)	155
TaiI	ACGT	4 cut(s)	316, 358, 392, 443
TaqI	TCGA	2 cut(s)	108, 138
TasI	AATT	5 cut(s)	345, 363, 475, 535, 643
TatI	WGTACW	2 cut(s)	18, 540
TauI	GCSGC	3 cut(s)	128, 146, 232
TfiI	GAWTC	4 cut(s)	64, 205, 238, 527
Tru1I	TTAA	3 cut(s)	366, 458, 633
Tru9I	TTAA	3 cut(s)	366, 458, 633
TseFI	GTSAC	2 cut(s)	83, 303
TseI	GCWGC	1 cut(s)	232
Tsp45I	GTSAC	2 cut(s)	83, 303
TspGWI	ACGGA	2 cut(s)	46, 291
VpaK11BI	GGWCC	1 cut(s)	485
VspI	ATTAAT	1 cut(s)	366
XagI	CCTNNNNNAGG	1 cut(s)	390
XapI	RAATTY	2 cut(s)	475, 643
XspI	CTAG	1 cut(s)	252
Zsp2I	ATGCAT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.