Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

7969812 .. 7971101

Gene Structure 1290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G23650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGAATTTAGGACAGGAAATTAGTGTCGGATCGTCTTGGAGCAAGGATGATGATATTGCTTTCGAGAAAGCCCTTGCAATTTATAACGATAAAACAGAGATTCGTTGGAAAAAAATTGCTACAGTTGTTCCGGGAAAAACTTTAGAACAAGTTATAGAGCATTACAACATTTTAGCTCGTGATGTTATGTTGATTGAATCTGGATGTGTACGTCTTCCAGATTATGATGATTTTTTAGAAGAACCAAATCACAATGCTTTTGGTAAAGAAAGAAGCATATTGGAAGGTGGCAACGATCGCAAATATGAGTCTAAACACAAAGGTAAATCAAAACTAAAGCAAAAACGACGAAGGGGTGTTCCTTGGAAGCCTTTTGAACACAGACAATTTCTGCATGGTTTGAAAAAATATGGGAAAGGTGATTGGCGTAGTATTTCTCGTCACTGTGTAGTGACAAGAACATCAACTCAGGTTGCAAGTCATGCTCAAAAATACTTTGCACATATCAACTCAGAGGATAAAAAGAGAAAGAGGCCAAGCATTCATGACATCACTATTGCGGAAAACAAAAGTATCTCAACAAAACAAAGACCAATCACATGGCAAAAAATAAACAACAATGGTGCTACTGCTTCCAACACTCAAGCCAATCAAACCACTTTGCAACCATCACTTGACATTCCTATATATGGTACACACAACAACATATGGAATGCACAAGCCACTCAAGTCATTTCACAGCCATCACAAAACCATCCTACATATGATGCACCCATCATATGGAACACACAAGTCGCTTCGCAACCATCGGCCAATATTCCTATGTATGGAACGTCCACCATAAGTCAACCAATGGTTGGACCAATGCTCTCACCTTTTGGAACAAACTTGAACCACTTGGCTCCATCTCATATGACTTCTGGAGTTCAACATGATTCAGTACCTTACTACTCAGGTCCTAGTGCACCGATCAACATGGATTCAATACCATACAACATTGACTTATATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009739 GO:0009751 GO:0009787 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0010033 GO:0010035 GO:0010115 GO:0010116 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0010646 GO:0014070 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0022603 GO:0023051 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0040008 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044424 GO:0044464 GO:0045828 GO:0045834 GO:0045893 GO:0045927 GO:0045935 GO:0046677 GO:0046889 GO:0046890 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0048638 GO:0048639 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1900618 GO:1901000 GO:1901001 GO:1901371 GO:1901419 GO:1901700 GO:1902680 GO:1902930 GO:1902932 GO:1903506 GO:1903508 GO:1905421 GO:1905613 GO:1905615 GO:1905957 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

337

Amino Acids

38.05

Weight (kDa)

9.32

Isoelectric Point (pI)

52.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	12 - 56	3.5e-08	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	120 - 166	9.9e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	84
AccB7I	CCANNNNNTGG	2 cut(s)	780, 857
AciI	CCGC	1 cut(s)	560
AclWI	GGATC	1 cut(s)	37
AcoI	YGGCCR	1 cut(s)	810
AcsI	RAATTY	1 cut(s)	4
AfaI	GTAC	3 cut(s)	210, 694, 942
AfiI	CCNNNNNNNGG	4 cut(s)	689, 780, 827, 857
AgsI	TTSAA	6 cut(s)	197, 377, 403, 892, 929, 984
AluBI	AGCT	1 cut(s)	176
AluI	AGCT	1 cut(s)	176
Alw21I	GWGCWC	1 cut(s)	967
Alw44I	GTGCAC	1 cut(s)	963
AlwI	GGATC	1 cut(s)	37
AoxI	GGCC	2 cut(s)	533, 810
ApaLI	GTGCAC	1 cut(s)	963
ApoI	RAATTY	1 cut(s)	4
AspS9I	GGNCC	2 cut(s)	860, 956
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	2 cut(s)	431, 864
AvaII	GGWCC	2 cut(s)	860, 956
BaeGI	GKGCMC	1 cut(s)	967
BaeI	ACNNNNGTAYC	2 cut(s)	556, 589
BauI	CACGAG	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	967
BccI	CCATC	6 cut(s)	676, 751, 762, 782, 814, 913
BcnI	CCSGG	1 cut(s)	132
BfaI	CTAG	2 cut(s)	960, 1012
BfmI	CTRYAG	1 cut(s)	120
Bme1390I	CCNGG	1 cut(s)	132
Bme18I	GGWCC	2 cut(s)	860, 956
BmgT120I	GGNCC	2 cut(s)	860, 956
BmiI	GGNNCC	1 cut(s)	903
BmrFI	CCNGG	1 cut(s)	132
BmsI	GCATC	1 cut(s)	757
BpiI	GAAGAC	1 cut(s)	206
BpmI	CTGGAG	1 cut(s)	942
BpuEI	CTTGAG	2 cut(s)	627, 711
BpuMI	CCSGG	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	4 cut(s)	689, 780, 827, 857
BseDI	CCNNGG	1 cut(s)	362
BseGI	GGATG	3 cut(s)	52, 209, 754
BseLI	CCNNNNNNNGG	4 cut(s)	689, 780, 827, 857
BseMII	CTCAG	3 cut(s)	482, 525, 966
BseSI	GKGCMC	1 cut(s)	967
Bsh1285I	CGRYCG	1 cut(s)	298
BshFI	GGCC	2 cut(s)	535, 812
BsiEI	CGRYCG	1 cut(s)	298
BsiHKAI	GWGCWC	1 cut(s)	967
BsiSI	CCGG	1 cut(s)	131
BslI	CCNNNNNNNGG	4 cut(s)	689, 780, 827, 857
BsmI	GAATGC	2 cut(s)	540, 718
BsnI	GGCC	2 cut(s)	535, 812
Bsp1286I	GDGCHC	1 cut(s)	967
Bsp143I	GATC	3 cut(s)	29, 295, 969
BspACI	CCGC	1 cut(s)	560
BspANI	GGCC	2 cut(s)	535, 812
BspCNI	CTCAG	3 cut(s)	481, 524, 965
BspHI	TCATGA	1 cut(s)	544
BspLI	GGNNCC	1 cut(s)	903
BspPI	GGATC	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	362
BssMI	GATC	3 cut(s)	29, 295, 969
BssSI	CACGAG	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	362
Bst2BI	CACGAG	1 cut(s)	177
Bst4CI	ACNGT	2 cut(s)	124, 446
BstAPI	GCANNNNNTGC	1 cut(s)	482
BstDEI	CTNAG	3 cut(s)	468, 511, 952
BstF5I	GGATG	3 cut(s)	52, 209, 754
BstKTI	GATC	3 cut(s)	32, 298, 972
BstMBI	GATC	3 cut(s)	29, 295, 969
BstMCI	CGRYCG	1 cut(s)	298
BstMWI	GCNNNNNNNGC	2 cut(s)	297, 482
BstSCI	CCNGG	1 cut(s)	130
BstSFI	CTRYAG	1 cut(s)	120
BstSLI	GKGCMC	1 cut(s)	967
BstV2I	GAAGAC	1 cut(s)	206
BstXI	CCANNNNNNTGG	1 cut(s)	600
BsuRI	GGCC	2 cut(s)	535, 812
BtsCI	GGATG	3 cut(s)	52, 209, 754
BtsIMutI	CAGTG	1 cut(s)	442
CciI	TCATGA	1 cut(s)	544
Cfr13I	GGNCC	2 cut(s)	860, 956
Csp6I	GTAC	3 cut(s)	209, 693, 941
CviAII	CATG	6 cut(s)	395, 482, 545, 600, 932, 976
CviJI	RGCY	9 cut(s)	71, 176, 370, 535, 647, 722, 742, 812, 902
CviKI_1	RGCY	9 cut(s)	71, 176, 370, 535, 647, 722, 742, 812, 902
CviQI	GTAC	3 cut(s)	209, 693, 941
DdeI	CTNAG	3 cut(s)	468, 511, 952
DpnI	GATC	3 cut(s)	31, 297, 971
DpnII	GATC	3 cut(s)	29, 295, 969
EaeI	YGGCCR	1 cut(s)	810
Eco130I	CCWWGG	1 cut(s)	362
Eco47I	GGWCC	2 cut(s)	860, 956
EcoO109I	RGGNCCY	1 cut(s)	956
EcoT14I	CCWWGG	1 cut(s)	362
ErhI	CCWWGG	1 cut(s)	362
FaeI	CATG	6 cut(s)	398, 485, 548, 603, 935, 979
FatI	CATG	6 cut(s)	394, 481, 544, 599, 931, 975
FauNDI	CATATG	4 cut(s)	707, 763, 779, 912
FokI	GGATG	3 cut(s)	59, 216, 741
FspBI	CTAG	2 cut(s)	960, 1012
GsuI	CTGGAG	1 cut(s)	942
HaeIII	GGCC	2 cut(s)	535, 812
HapII	CCGG	1 cut(s)	131
Hin1II	CATG	6 cut(s)	398, 485, 548, 603, 935, 979
HincII	GTYRAC	1 cut(s)	848
HindII	GTYRAC	1 cut(s)	848
HinfI	GANTC	5 cut(s)	100, 197, 308, 935, 980
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	2 cut(s)	431, 864
Hpy166II	GTNNAC	5 cut(s)	209, 695, 837, 848, 965
Hpy188I	TCNGA	2 cut(s)	29, 514
Hpy188III	TCNNGA	6 cut(s)	64, 179, 201, 218, 545, 921
Hpy8I	GTNNAC	5 cut(s)	209, 695, 837, 848, 965
Hpy99I	CGWCG	1 cut(s)	351
HpyAV	CCTTC	2 cut(s)	278, 345
HpyCH4III	ACNGT	2 cut(s)	124, 446
HpyCH4IV	ACGT	2 cut(s)	211, 833
HpyCH4V	TGCA	8 cut(s)	77, 394, 476, 500, 664, 716, 770, 965
HpyF10VI	GCNNNNNNNGC	2 cut(s)	297, 482
HpyF3I	CTNAG	3 cut(s)	468, 511, 952
HpySE526I	ACGT	2 cut(s)	211, 833
Hsp92II	CATG	6 cut(s)	398, 485, 548, 603, 935, 979
Kzo9I	GATC	3 cut(s)	29, 295, 969
LmnI	GCTCC	2 cut(s)	39, 907
LpnPI	CCDG	6 cut(s)	144, 186, 231, 455, 906, 939
LweI	GCATC	1 cut(s)	757
MaeI	CTAG	2 cut(s)	960, 1012
MaeII	ACGT	2 cut(s)	211, 833
MaeIII	GTNAC	2 cut(s)	440, 451
MalI	GATC	3 cut(s)	31, 297, 971
MboI	GATC	3 cut(s)	29, 295, 969
MboII	GAAGA	2 cut(s)	206, 251
MhlI	GDGCHC	1 cut(s)	967
MluCI	AATT	5 cut(s)	4, 18, 78, 114, 386
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	4 cut(s)	7, 86, 660, 838
MnlI	CCTC	2 cut(s)	508, 525
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	132
Mva1269I	GAATGC	2 cut(s)	540, 718
MwoI	GCNNNNNNNGC	2 cut(s)	297, 482
NciI	CCSGG	1 cut(s)	132
NdeI	CATATG	4 cut(s)	707, 763, 779, 912
NdeII	GATC	3 cut(s)	29, 295, 969
NlaIII	CATG	6 cut(s)	398, 485, 548, 603, 935, 979
NlaIV	GGNNCC	1 cut(s)	903
NmuCI	GTSAC	2 cut(s)	440, 451
PagI	TCATGA	1 cut(s)	544
PctI	GAATGC	2 cut(s)	540, 718
PfeI	GAWTC	4 cut(s)	100, 197, 935, 980
PflMI	CCANNNNNTGG	2 cut(s)	780, 857
PfoI	TCCNGGA	1 cut(s)	130
Ple19I	CGATCG	1 cut(s)	298
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PpuMI	RGGWCCY	1 cut(s)	956
PsiI	TTATAA	1 cut(s)	84
Psp5II	RGGWCCY	1 cut(s)	956
PspN4I	GGNNCC	1 cut(s)	903
PspPI	GGNCC	2 cut(s)	860, 956
PspPPI	RGGWCCY	1 cut(s)	956
PvuI	CGATCG	1 cut(s)	298
RsaI	GTAC	3 cut(s)	210, 694, 942
RsaNI	GTAC	3 cut(s)	209, 693, 941
Sau3AI	GATC	3 cut(s)	29, 295, 969
Sau96I	GGNCC	2 cut(s)	860, 956
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	967
SfaNI	GCATC	1 cut(s)	757
SfcI	CTRYAG	1 cut(s)	120
SinI	GGWCC	2 cut(s)	860, 956
SmlI	CTYRAG	2 cut(s)	642, 726
SmoI	CTYRAG	2 cut(s)	642, 726
Sse9I	AATT	5 cut(s)	4, 18, 78, 114, 386
SsiI	CCGC	1 cut(s)	560
SspI	AATATT	1 cut(s)	817
SspMI	CTAG	2 cut(s)	960, 1012
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	1 cut(s)	362
TaaI	ACNGT	2 cut(s)	124, 446
TaiI	ACGT	2 cut(s)	214, 836
TaqI	TCGA	1 cut(s)	63
TasI	AATT	5 cut(s)	4, 18, 78, 114, 386
TfiI	GAWTC	4 cut(s)	100, 197, 935, 980
TscAI	CASTG	1 cut(s)	449
TseFI	GTSAC	2 cut(s)	440, 451
Tsp45I	GTSAC	2 cut(s)	440, 451
TspDTI	ATGAA	2 cut(s)	17, 533
TspRI	CASTG	1 cut(s)	449
Van91I	CCANNNNNTGG	2 cut(s)	780, 857
VneI	GTGCAC	1 cut(s)	963
VpaK11BI	GGWCC	2 cut(s)	860, 956
XapI	RAATTY	1 cut(s)	4
XspI	CTAG	2 cut(s)	960, 1012

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.