Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

8153115 .. 8154710

Gene Structure 1596 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G24110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGAGAAGAACCATAGTAGTGGAGAGTGGGAGAAGATGAAGAACGAGATCAACGAGCTAATGATAGAAGGAAGAGACTATGCACACCAGTTTGGATCAGCTTCATCTCAAGAAACACGTGAACATTTAGCCAAAAAGATTCTTCAATCTTACCACAAGTCTCTCACCATCATGAACTACTCCGGCGAACTTGACCAAGTTTCTCAGGGTGGAGGAAGCCCCAAGAGCGATGATTCCGATCAAGAACCACTTGTCATCAAGAGTTCGAAGAAGTCAATGCCAAGGTGGAGTTCAAAAGTCAGAATTGCCCCTGGAGCTGGTGTTGATAGAACGCTGGACGATGGATTCAGTTGGAGAAAGTACGGCCAGAAGGATATTCTCGGAGCCAAATTTCCAAGAGGATACTATAGATGCACGTATAGAAAGTCTCAAGGATGTGAAGCCACTAAACAAGTCCAAAGATCTGATGAAAATCAGATGCTCCTTGAGATCAGTTACCGAGGAATACATTCTTGCTCTCAAGCTGCAAATGTCGGTACAACAATGCCGATACAAAACCTCGAACCGAACCAGACCCAAGAACACGGAAATCTTGACATGGTAAAGGAAAGTGTAGACAACTACAATCACCAAGCACATTTGCATCACAACCTTCACTATCCATTGTCATCTACCCCAAATCTAGAGAATAACAATGCCTATATGCTTCAAATGCGAGATCAAAACATCGAATATTTTGGATCTACGAGCTTCTCTAGTGATCTAGGAACTAGTATCAACTACAATTTTCCAGCATCTGGCTCGGCTTCTCACTCAGCATCAAACTCTCCGTCCACCGTCCCTTTGGAATCCCCGTTTGAAAGCTATGATCCAAATCATCCATATGGAGGATTTGGTGGGTTCTATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001067 GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009636 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010035 GO:0010150 GO:0010193 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045893 GO:0045935 GO:0046677 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0090693 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

303

Amino Acids

33.98

Weight (kDa)

6.11

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	113 - 172	4.5e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	797
AccI	GTMKAC	1 cut(s)	615
AclWI	GGATC	3 cut(s)	103, 748, 863
AcoI	YGGCCR	1 cut(s)	364
AcsI	RAATTY	1 cut(s)	389
AcvI	CACGTG	1 cut(s)	119
AfaI	GTAC	2 cut(s)	362, 538
AfiI	CCNNNNNNNGG	3 cut(s)	317, 797, 887
AflIII	ACRYGT	1 cut(s)	116
AgsI	TTSAA	4 cut(s)	146, 294, 710, 860
AhlI	ACTAGT	1 cut(s)	770
AjnI	CCWGG	1 cut(s)	310
AjuI	GAANNNNNNNTTGG	2 cut(s)	274, 306
AluBI	AGCT	6 cut(s)	58, 101, 317, 524, 750, 864
AluI	AGCT	6 cut(s)	58, 101, 317, 524, 750, 864
Alw26I	GTCTC	3 cut(s)	69, 165, 432
AlwI	GGATC	3 cut(s)	103, 748, 863
AlwNI	CAGNNNCTG	1 cut(s)	797
AoxI	GGCC	1 cut(s)	364
ApeKI	GCWGC	1 cut(s)	524
ApoI	RAATTY	1 cut(s)	389
ArsI	GACNNNNNNTTYG	2 cut(s)	815, 847
Asp700I	GAANNNNTTC	1 cut(s)	508
AsuHPI	GGTGA	2 cut(s)	157, 620
AsuII	TTCGAA	1 cut(s)	266
BbrPI	CACGTG	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	511
BccI	CCATC	2 cut(s)	176, 335
BceAI	ACGGC	1 cut(s)	379
BcgI	CGANNNNNNTGC	2 cut(s)	783, 817
BciT130I	CCWGG	1 cut(s)	312
BciVI	GTATCC	1 cut(s)	395
BcoDI	GTCTC	3 cut(s)	69, 165, 432
BcuI	ACTAGT	1 cut(s)	770
BfaI	CTAG	4 cut(s)	683, 756, 764, 771
BfmI	CTRYAG	1 cut(s)	406
BfuI	GTATCC	1 cut(s)	395
BglII	AGATCT	1 cut(s)	461
BisI	GCNGC	1 cut(s)	525
BlsI	GCNGC	1 cut(s)	526
Bme1390I	CCNGG	1 cut(s)	312
BmiI	GGNNCC	1 cut(s)	385
BmrFI	CCNGG	1 cut(s)	312
BmsI	GCATC	5 cut(s)	401, 468, 652, 803, 827
BpmI	CTGGAG	1 cut(s)	333
Bpu14I	TTCGAA	1 cut(s)	266
BpuEI	CTTGAG	4 cut(s)	93, 414, 504, 506
BsaAI	YACGTR	2 cut(s)	119, 417
BsaBI	GATNNNNATC	3 cut(s)	237, 471, 873
BsaJI	CCNNGG	3 cut(s)	281, 310, 499
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bsc4I	CCNNNNNNNGG	3 cut(s)	317, 797, 887
Bse1I	ACTGG	1 cut(s)	88
Bse8I	GATNNNNATC	3 cut(s)	237, 471, 873
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	3 cut(s)	281, 310, 499
BseGI	GGATG	2 cut(s)	440, 877
BseJI	GATNNNNATC	3 cut(s)	237, 471, 873
BseLI	CCNNNNNNNGG	3 cut(s)	317, 797, 887
BseMII	CTCAG	2 cut(s)	218, 828
BseNI	ACTGG	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	511
BshFI	GGCC	1 cut(s)	366
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	824
BslI	CCNNNNNNNGG	3 cut(s)	317, 797, 887
BsmAI	GTCTC	3 cut(s)	69, 165, 432
BsmFI	GGGAC	1 cut(s)	824
BsnI	GGCC	1 cut(s)	366
Bsp119I	TTCGAA	1 cut(s)	266
Bsp143I	GATC	9 cut(s)	48, 95, 238, 461, 489, 718, 740, 760, 868
BspANI	GGCC	1 cut(s)	366
BspCNI	CTCAG	2 cut(s)	217, 827
BspHI	TCATGA	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	385
BspPI	GGATC	3 cut(s)	103, 748, 863
BspT104I	TTCGAA	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	88
BssECI	CCNNGG	3 cut(s)	281, 310, 499
BssMI	GATC	9 cut(s)	48, 95, 238, 461, 489, 718, 740, 760, 868
BssT1I	CCWWGG	1 cut(s)	281
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	1 cut(s)	838
Bst6I	CTCTTC	1 cut(s)	67
BstBAI	YACGTR	2 cut(s)	119, 417
BstBI	TTCGAA	1 cut(s)	266
BstDEI	CTNAG	3 cut(s)	204, 814, 909
BstF5I	GGATG	2 cut(s)	440, 877
BstKTI	GATC	9 cut(s)	51, 98, 241, 464, 492, 721, 743, 763, 871
BstMAI	GTCTC	3 cut(s)	69, 165, 432
BstMBI	GATC	9 cut(s)	48, 95, 238, 461, 489, 718, 740, 760, 868
BstMWI	GCNNNNNNNGC	3 cut(s)	225, 314, 712
BstNI	CCWGG	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	310
BstSFI	CTRYAG	1 cut(s)	406
BstV1I	GCAGC	1 cut(s)	511
BstX2I	RGATCY	2 cut(s)	461, 740
BstXI	CCANNNNNNTGG	1 cut(s)	20
BstYI	RGATCY	2 cut(s)	461, 740
BsuI	GTATCC	1 cut(s)	395
BsuRI	GGCC	1 cut(s)	366
BtgZI	GCGATG	1 cut(s)	243
BtsCI	GGATG	2 cut(s)	440, 877
CaiI	CAGNNNCTG	1 cut(s)	797
CciI	TCATGA	1 cut(s)	171
Csp6I	GTAC	2 cut(s)	361, 537
CviAII	CATG	2 cut(s)	172, 598
CviQI	GTAC	2 cut(s)	361, 537
DdeI	CTNAG	3 cut(s)	204, 814, 909
DpnI	GATC	9 cut(s)	50, 97, 240, 463, 491, 720, 742, 762, 870
DpnII	GATC	9 cut(s)	48, 95, 238, 461, 489, 718, 740, 760, 868
EaeI	YGGCCR	1 cut(s)	364
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	281
Eco72I	CACGTG	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	281
ErhI	CCWWGG	1 cut(s)	281
FaeI	CATG	2 cut(s)	175, 601
FalI	AAGNNNNNCTT	2 cut(s)	234, 266
FaqI	GGGAC	1 cut(s)	824
FatI	CATG	2 cut(s)	171, 597
FauNDI	CATATG	1 cut(s)	883
FblI	GTMKAC	1 cut(s)	615
Fnu4HI	GCNGC	1 cut(s)	525
FokI	GGATG	2 cut(s)	447, 864
Fsp4HI	GCNGC	1 cut(s)	525
FspBI	CTAG	4 cut(s)	683, 756, 764, 771
GluI	GCNGC	1 cut(s)	525
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	366
HapII	CCGG	1 cut(s)	183
Hin1II	CATG	2 cut(s)	175, 601
HinfI	GANTC	4 cut(s)	139, 233, 345, 848
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	2 cut(s)	157, 620
Hpy166II	GTNNAC	3 cut(s)	122, 616, 834
Hpy188I	TCNGA	5 cut(s)	238, 302, 383, 466, 477
Hpy188III	TCNNGA	6 cut(s)	110, 172, 242, 259, 593, 683
Hpy8I	GTNNAC	3 cut(s)	122, 616, 834
HpyAV	CCTTC	3 cut(s)	62, 364, 662
HpyCH4III	ACNGT	1 cut(s)	838
HpyCH4IV	ACGT	2 cut(s)	118, 416
HpyCH4V	TGCA	4 cut(s)	83, 414, 527, 643
HpyF10VI	GCNNNNNNNGC	3 cut(s)	225, 314, 712
HpyF3I	CTNAG	3 cut(s)	204, 814, 909
HpySE526I	ACGT	2 cut(s)	118, 416
Hsp92II	CATG	2 cut(s)	175, 601
Kzo9I	GATC	9 cut(s)	48, 95, 238, 461, 489, 718, 740, 760, 868
LmnI	GCTCC	3 cut(s)	314, 383, 486
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	5 cut(s)	401, 468, 652, 803, 827
MaeI	CTAG	4 cut(s)	683, 756, 764, 771
MaeII	ACGT	2 cut(s)	118, 416
MaeIII	GTNAC	1 cut(s)	494
MalI	GATC	9 cut(s)	50, 97, 240, 463, 491, 720, 742, 762, 870
MboI	GATC	9 cut(s)	48, 95, 238, 461, 489, 718, 740, 760, 868
MboII	GAAGA	6 cut(s)	19, 46, 52, 84, 134, 280
MflI	RGATCY	2 cut(s)	461, 740
MluCI	AATT	3 cut(s)	303, 389, 784
MmeI	TCCRAC	1 cut(s)	332
MnlI	CCTC	5 cut(s)	206, 392, 494, 569, 881
MroXI	GAANNNNTTC	1 cut(s)	508
MslI	CAYNNNNRTG	3 cut(s)	18, 170, 882
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	3 cut(s)	225, 314, 712
NdeI	CATATG	1 cut(s)	883
NdeII	GATC	9 cut(s)	48, 95, 238, 461, 489, 718, 740, 760, 868
NlaIII	CATG	2 cut(s)	175, 601
NlaIV	GGNNCC	1 cut(s)	385
NmeAIII	GCCGAG	1 cut(s)	782
NspV	TTCGAA	1 cut(s)	266
PagI	TCATGA	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PdmI	GAANNNNTTC	1 cut(s)	508
PfeI	GAWTC	4 cut(s)	139, 233, 345, 848
PflMI	CCANNNNNTGG	1 cut(s)	797
PkrI	GCNGC	1 cut(s)	526
PmaCI	CACGTG	1 cut(s)	119
PmlI	CACGTG	1 cut(s)	119
Ppu21I	YACGTR	2 cut(s)	119, 417
Psp6I	CCWGG	1 cut(s)	310
PspCI	CACGTG	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	1 cut(s)	385
PstNI	CAGNNNCTG	1 cut(s)	797
PsuI	RGATCY	2 cut(s)	461, 740
RsaI	GTAC	2 cut(s)	362, 538
RsaNI	GTAC	2 cut(s)	361, 537
RseI	CAYNNNNRTG	3 cut(s)	18, 170, 882
SatI	GCNGC	1 cut(s)	525
Sau3AI	GATC	9 cut(s)	48, 95, 238, 461, 489, 718, 740, 760, 868
ScrFI	CCNGG	1 cut(s)	312
SfaNI	GCATC	5 cut(s)	401, 468, 652, 803, 827
SfcI	CTRYAG	1 cut(s)	406
SfuI	TTCGAA	1 cut(s)	266
SmiMI	CAYNNNNRTG	3 cut(s)	18, 170, 882
SmlI	CTYRAG	4 cut(s)	108, 429, 485, 519
SmoI	CTYRAG	4 cut(s)	108, 429, 485, 519
SpeI	ACTAGT	1 cut(s)	770
Sse9I	AATT	3 cut(s)	303, 389, 784
SspI	AATATT	1 cut(s)	734
SspMI	CTAG	4 cut(s)	683, 756, 764, 771
StyD4I	CCNGG	1 cut(s)	310
StyI	CCWWGG	1 cut(s)	281
TaaI	ACNGT	1 cut(s)	838
TaiI	ACGT	2 cut(s)	121, 419
TaqI	TCGA	3 cut(s)	266, 561, 729
TasI	AATT	3 cut(s)	303, 389, 784
TfiI	GAWTC	4 cut(s)	139, 233, 345, 848
TseI	GCWGC	1 cut(s)	524
TspDTI	ATGAA	4 cut(s)	53, 93, 188, 483
TspGWI	ACGGA	2 cut(s)	600, 819
Van91I	CCANNNNNTGG	1 cut(s)	797
XapI	RAATTY	1 cut(s)	389
XbaI	TCTAGA	1 cut(s)	682
XcmI	CCANNNNNNNNNTGG	1 cut(s)	841
XmiI	GTMKAC	1 cut(s)	615
XmnI	GAANNNNTTC	1 cut(s)	508
XspI	CTAG	4 cut(s)	683, 756, 764, 771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.