AT5G28720
MYB Family

nuclease activity

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
N/A
Physical Location & Seq
Forward (+)
10776131 .. 10776952
822 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G28720.1

Sequence Viewer

Length: 342 bp
ATGCTGGTGAAGGAACATCGAGTAGAGGTGCAAGCAATACAAGATGCAATGAATTTGGTGAAACCAACAAAAATATATATAACTGTGCTACAAAATAAGCCTCTTCCTTTCAAAGATTTACTAGATGTTATACATAGCAAACATGATCTTGAGCAAGATTTTCGCTATTCACCCCACACACTTGGAGTTCAGCTTGATCTCGAACAAGAACCATATGATGATGATGGTGTGCCAGCAGATGACATAGAAGAACATGGTCAAACAGCACCTCCCTTTGAGAATTCTAATCTAAGAGCATATGATGATGATTTACCACGACTCTCTCGGTCAACTGATAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

12.98

Weight (kDa)

4.55

Isoelectric Point (pI)

54.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 52, 280
AgsI TTSAA 1 cut(s) 112
AluBI AGCT 1 cut(s) 193
AluI AGCT 1 cut(s) 193
ApoI RAATTY 2 cut(s) 52, 280
AsuHPI GGTGA 3 cut(s) 19, 70, 162
BccI CCATC 1 cut(s) 218
BcgI CGANNNNNNTGC 2 cut(s) 143, 177
BfaI CTAG 1 cut(s) 122
BmsI GCATC 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 170
BsaXI ACNNNNNCTCC 2 cut(s) 253, 283
Bse3DI GCAATG 1 cut(s) 54
BseMI GCAATG 1 cut(s) 54
Bsp143I GATC 2 cut(s) 145, 196
BsrDI GCAATG 1 cut(s) 54
BssMI GATC 2 cut(s) 145, 196
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 108
BstC8I GCNNGC 2 cut(s) 33, 234
BstDEI CTNAG 1 cut(s) 290
BstKTI GATC 2 cut(s) 148, 199
BstMBI GATC 2 cut(s) 145, 196
BstXI CCANNNNNNTGG 1 cut(s) 182
Cac8I GCNNGC 2 cut(s) 33, 234
CviAII CATG 2 cut(s) 143, 254
CviJI RGCY 2 cut(s) 100, 193
CviKI_1 RGCY 2 cut(s) 100, 193
DdeI CTNAG 1 cut(s) 290
DpnI GATC 2 cut(s) 147, 198
DpnII GATC 2 cut(s) 145, 196
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
EcoRI GAATTC 1 cut(s) 280
FaeI CATG 2 cut(s) 146, 257
FatI CATG 2 cut(s) 142, 253
FauNDI CATATG 2 cut(s) 214, 298
FspBI CTAG 1 cut(s) 122
Hin1II CATG 2 cut(s) 146, 257
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HinfI GANTC 1 cut(s) 318
HphI GGTGA 3 cut(s) 19, 70, 162
Hpy166II GTNNAC 1 cut(s) 330
Hpy188III TCNNGA 2 cut(s) 149, 200
Hpy8I GTNNAC 1 cut(s) 330
HpyAV CCTTC 1 cut(s) 4
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4V TGCA 2 cut(s) 31, 47
HpyF3I CTNAG 1 cut(s) 290
Hsp92II CATG 2 cut(s) 146, 257
Kzo9I GATC 2 cut(s) 145, 196
LpnPI CCDG 1 cut(s) 246
LweI GCATC 1 cut(s) 34
MaeI CTAG 1 cut(s) 122
MalI GATC 2 cut(s) 147, 198
MboI GATC 2 cut(s) 145, 196
MboII GAAGA 2 cut(s) 95, 260
MluCI AATT 2 cut(s) 52, 280
MlyI GAGTC 1 cut(s) 312
MnlI CCTC 3 cut(s) 19, 111, 279
NdeI CATATG 2 cut(s) 214, 298
NdeII GATC 2 cut(s) 145, 196
NlaIII CATG 2 cut(s) 146, 257
PleI GAGTC 1 cut(s) 312
PpsI GAGTC 1 cut(s) 312
Sau3AI GATC 2 cut(s) 145, 196
SchI GAGTC 1 cut(s) 312
SetI ASST 3 cut(s) 30, 195, 271
SfaNI GCATC 1 cut(s) 34
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 2 cut(s) 52, 280
SspMI CTAG 1 cut(s) 122
TaaI ACNGT 1 cut(s) 85
TaqI TCGA 2 cut(s) 19, 201
TaqII GACCGA 1 cut(s) 315
TasI AATT 2 cut(s) 52, 280
TspDTI ATGAA 1 cut(s) 65
XapI RAATTY 2 cut(s) 52, 280
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.