AT5G29613
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
N/A
Physical Location & Seq
Forward (+)
11280577 .. 11281110
534 bp
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UTR
Exon/CDS
Intron
AT5G29613.1

Sequence Viewer

Length: 354 bp
ATGAAGACCTTGAAGGGAAAATACGTAAGTGGTGTGAACTTCTTAGTTGCAGCTCCGGGTTTGGATGGGATCCAAACACAAAACGGTTTACAGCATCATATGAGTTACAAAAAATTCAAAGATGAAACCTTTGAAGAATTTGATGATCTCAAGATGGTATTTGAGGACAACATAGCAACCGGTGGGAATGCTATTGGATTAGGTGATGGTACGGATGCTCGAACATGTGAAATTGCAGGAAAAAAGCAAACAAGTTCTATTGAAGATTTTCTATGGATGTCGAGGAAGATCATGAAACACCTTCGCATTTTGTGGACATCAATTAAAGGGGCCCTTCAGAAAAACTTCCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

117

Amino Acids

13.12

Weight (kDa)

8.69

Isoelectric Point (pI)

43.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 64, 77
AcsI RAATTY 2 cut(s) 113, 137
AcuI CTGAAG 1 cut(s) 320
AfaI GTAC 1 cut(s) 211
AflIII ACRYGT 1 cut(s) 224
AgeI ACCGGT 1 cut(s) 179
AgsI TTSAA 4 cut(s) 13, 118, 134, 263
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
AlwI GGATC 2 cut(s) 64, 77
AoxI GGCC 1 cut(s) 330
ApaI GGGCCC 1 cut(s) 334
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 2 cut(s) 113, 137
AsiGI ACCGGT 1 cut(s) 179
Asp700I GAANNNNTTC 2 cut(s) 267, 344
AspS9I GGNCC 2 cut(s) 330, 331
AsuC2I CCSGG 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 215
BaeGI GKGCMC 1 cut(s) 334
BamHI GGATCC 1 cut(s) 69
BanII GRGCYC 1 cut(s) 334
BarI GAAGNNNNNNTAC 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 62
BccI CCATC 3 cut(s) 59, 148, 200
BcnI CCSGG 1 cut(s) 57
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 57
BmgT120I GGNCC 2 cut(s) 330, 331
BmiI GGNNCC 3 cut(s) 71, 331, 332
BmrFI CCNGG 1 cut(s) 57
BmsI GCATC 2 cut(s) 103, 205
BpiI GAAGAC 1 cut(s) 11
BpuEI CTTGAG 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 57
BsaAI YACGTR 1 cut(s) 25
BsaWI WCCGGW 1 cut(s) 179
Bse118I RCCGGY 1 cut(s) 179
BseGI GGATG 3 cut(s) 70, 220, 282
BseSI GKGCMC 1 cut(s) 334
BseXI GCAGC 1 cut(s) 62
BshFI GGCC 1 cut(s) 332
BshTI ACCGGT 1 cut(s) 179
BsiSI CCGG 2 cut(s) 56, 180
BsmI GAATGC 1 cut(s) 193
BsnI GGCC 1 cut(s) 332
Bsp120I GGGCCC 1 cut(s) 330
Bsp1286I GDGCHC 1 cut(s) 334
Bsp143I GATC 3 cut(s) 69, 145, 288
BspANI GGCC 1 cut(s) 332
BspHI TCATGA 1 cut(s) 291
BspLI GGNNCC 3 cut(s) 71, 331, 332
BspPI GGATC 2 cut(s) 64, 77
BsrFI RCCGGY 1 cut(s) 179
BssAI RCCGGY 1 cut(s) 179
BssMI GATC 3 cut(s) 69, 145, 288
Bst4CI ACNGT 1 cut(s) 86
BstBAI YACGTR 1 cut(s) 25
BstDEI CTNAG 1 cut(s) 43
BstF5I GGATG 3 cut(s) 70, 220, 282
BstKTI GATC 3 cut(s) 72, 148, 291
BstMBI GATC 3 cut(s) 69, 145, 288
BstNSI RCATGY 1 cut(s) 228
BstSCI CCNGG 1 cut(s) 55
BstSLI GKGCMC 1 cut(s) 334
BstSNI TACGTA 1 cut(s) 25
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 69
BstYI RGATCY 1 cut(s) 69
BsuRI GGCC 1 cut(s) 332
BtsCI GGATG 3 cut(s) 70, 220, 282
CciI TCATGA 1 cut(s) 291
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 2 cut(s) 330, 331
Csp6I GTAC 1 cut(s) 210
CspAI ACCGGT 1 cut(s) 179
CviAII CATG 2 cut(s) 225, 292
CviJI RGCY 2 cut(s) 53, 332
CviKI_1 RGCY 2 cut(s) 53, 332
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 1 cut(s) 43
DpnI GATC 3 cut(s) 71, 147, 290
DpnII GATC 3 cut(s) 69, 145, 288
Eco105I TACGTA 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 334
Eco57I CTGAAG 1 cut(s) 320
EcoO109I RGGNCCY 2 cut(s) 330, 331
EcoT38I GRGCYC 1 cut(s) 334
FaeI CATG 2 cut(s) 228, 295
FaiI YATR 6 cut(s) 99, 101, 173, 226, 274, 293
FalI AAGNNNNNCTT 2 cut(s) 318, 350
FatI CATG 2 cut(s) 224, 291
FauNDI CATATG 1 cut(s) 99
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 3 cut(s) 77, 227, 289
FriOI GRGCYC 1 cut(s) 334
Fsp4HI GCNGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 51
HaeIII GGCC 1 cut(s) 332
HapII CCGG 2 cut(s) 56, 180
Hin1II CATG 2 cut(s) 228, 295
HpaII CCGG 2 cut(s) 56, 180
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 3 cut(s) 37, 89, 315
Hpy188I TCNGA 1 cut(s) 339
Hpy188III TCNNGA 2 cut(s) 151, 292
Hpy8I GTNNAC 3 cut(s) 37, 89, 315
HpyAV CCTTC 3 cut(s) 7, 311, 344
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 2 cut(s) 50, 236
HpyF3I CTNAG 1 cut(s) 43
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 2 cut(s) 228, 295
Kzo9I GATC 3 cut(s) 69, 145, 288
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 3 cut(s) 69, 193, 222
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 2 cut(s) 103, 205
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 104
MalI GATC 3 cut(s) 71, 147, 290
MboI GATC 3 cut(s) 69, 145, 288
MboII GAAGA 4 cut(s) 16, 146, 275, 298
MflI RGATCY 1 cut(s) 69
MhlI GDGCHC 1 cut(s) 334
MluCI AATT 4 cut(s) 113, 137, 231, 321
MnlI CCTC 2 cut(s) 157, 276
MroXI GAANNNNTTC 2 cut(s) 267, 344
MseI TTAA 1 cut(s) 324
MspI CCGG 2 cut(s) 56, 180
MspR9I CCNGG 1 cut(s) 57
Mva1269I GAATGC 1 cut(s) 193
NciI CCSGG 1 cut(s) 57
NdeI CATATG 1 cut(s) 99
NdeII GATC 3 cut(s) 69, 145, 288
NlaIII CATG 2 cut(s) 228, 295
NlaIV GGNNCC 3 cut(s) 71, 331, 332
NspI RCATGY 1 cut(s) 228
PagI TCATGA 1 cut(s) 291
PciI ACATGT 1 cut(s) 224
PctI GAATGC 1 cut(s) 193
PdmI GAANNNNTTC 2 cut(s) 267, 344
PinAI ACCGGT 1 cut(s) 179
PkrI GCNGC 1 cut(s) 52
Ppu21I YACGTR 1 cut(s) 25
PscI ACATGT 1 cut(s) 224
PspN4I GGNNCC 3 cut(s) 71, 331, 332
PspOMI GGGCCC 1 cut(s) 330
PspPI GGNCC 2 cut(s) 330, 331
PsuI RGATCY 1 cut(s) 69
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 3 cut(s) 69, 145, 288
Sau96I GGNCC 2 cut(s) 330, 331
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 1 cut(s) 334
SetI ASST 6 cut(s) 11, 27, 55, 131, 205, 303
SfaNI GCATC 2 cut(s) 103, 205
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
SnaBI TACGTA 1 cut(s) 25
Sse9I AATT 4 cut(s) 113, 137, 231, 321
StyD4I CCNGG 1 cut(s) 55
TaaI ACNGT 1 cut(s) 86
TaiI ACGT 1 cut(s) 27
TaqI TCGA 2 cut(s) 220, 281
TasI AATT 4 cut(s) 113, 137, 231, 321
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 3 cut(s) 17, 138, 308
TspGWI ACGGA 1 cut(s) 227
XapI RAATTY 2 cut(s) 113, 137
XceI RCATGY 1 cut(s) 228
XmnI GAANNNNTTC 2 cut(s) 267, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.