AT5G39700
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
N/A
Physical Location & Seq
Reverse (-)
15893761 .. 15894424
664 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G39700.1

Sequence Viewer

Length: 573 bp
ATGTATCTGTTTATGTATAAATGTAACATAGTTTTGGAGGAGACTCATGTTTTTCAAAATACCCCTTGTGATGTTTCATTGCAGAGGCCATTTAATGGGTTTGGAGAAAACAATGCATTACCATTGAGAAAGATGCATCAAGAGGAGAAGAAGAAGAAACATAGGGGTGGACACTGGACACTTTCAGAGGATCTCAAACTCAAAGAGCTTGTGGCGGTTTTTGGTCCTCAGAACTGGAAATTCATTGGAGAGAAGATGGAACCAAGAACAAGTCTAAGTTGTAGACAAAGGTGGTTTAACCAGCTCGATCCGAAGATTAACAAAAGAAATTTCACTGATGAGGAAGAAGAGAAGCTGCTTAGAGCTCACATATTATATGGTAACAAATGGTCTAAGATCGCTAAGCTTTTCAATCGAAGAACAGACCATGCTGTTAAGAATCATTGGCACAGTCTCATGAATAGAATCATTAGGAAGCAATCAGCTTCTGACATAAGATCTTTCGATAACATCCAGAATTATCAAACCTCCAACTTTCTTCCTGGTTTGTGTCTCCTTAATACTAAACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

190

Amino Acids

22.68

Weight (kDa)

9.69

Isoelectric Point (pI)

61.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 57 - 102 8.6e-12 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 59 - 119 1.2e-15 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 108 - 152 1.9e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 111 - 159 4.5e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 95
AccI GTMKAC 1 cut(s) 283
AciI CCGC 1 cut(s) 215
AclWI GGATC 2 cut(s) 198, 302
AcsI RAATTY 2 cut(s) 239, 328
AfiI CCNNNNNNNGG 1 cut(s) 95
AgsI TTSAA 2 cut(s) 56, 412
AjnI CCWGG 1 cut(s) 541
AluBI AGCT 6 cut(s) 208, 304, 355, 365, 406, 485
AluI AGCT 6 cut(s) 208, 304, 355, 365, 406, 485
Alw21I GWGCWC 1 cut(s) 367
Alw26I GTCTC 3 cut(s) 35, 458, 557
AlwI GGATC 2 cut(s) 198, 302
AlwNI CAGNNNCTG 1 cut(s) 488
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 355
ApoI RAATTY 2 cut(s) 239, 328
AspS9I GGNCC 1 cut(s) 224
AvaII GGWCC 1 cut(s) 224
BanII GRGCYC 1 cut(s) 367
Bbv12I GWGCWC 1 cut(s) 367
BbvI GCAGC 1 cut(s) 342
BccI CCATC 1 cut(s) 250
BciT130I CCWGG 1 cut(s) 543
BcoDI GTCTC 3 cut(s) 35, 458, 557
BglII AGATCT 1 cut(s) 497
BisI GCNGC 1 cut(s) 356
BlpI GCTNAGC 1 cut(s) 402
BlsI GCNGC 1 cut(s) 357
Bme1390I CCNGG 1 cut(s) 543
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 543
BmsI GCATC 2 cut(s) 123, 145
Bpu1102I GCTNAGC 1 cut(s) 402
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse1I ACTGG 2 cut(s) 179, 239
Bse3DI GCAATG 1 cut(s) 77
BseBI CCWGG 1 cut(s) 543
BseGI GGATG 1 cut(s) 510
BseLI CCNNNNNNNGG 1 cut(s) 95
BseMI GCAATG 1 cut(s) 77
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 2 cut(s) 179, 239
BseRI GAGGAG 2 cut(s) 53, 158
BseXI GCAGC 1 cut(s) 342
BshFI GGCC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 367
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 3 cut(s) 35, 458, 557
BsnI GGCC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 367
Bsp143I GATC 4 cut(s) 190, 307, 396, 497
Bsp1720I GCTNAGC 1 cut(s) 402
BspACI CCGC 1 cut(s) 215
BspANI GGCC 1 cut(s) 88
BspCNI CTCAG 1 cut(s) 241
BspHI TCATGA 1 cut(s) 456
BspLI GGNNCC 1 cut(s) 261
BspPI GGATC 2 cut(s) 198, 302
BsrDI GCAATG 1 cut(s) 77
BsrI ACTGG 2 cut(s) 179, 239
BssMI GATC 4 cut(s) 190, 307, 396, 497
Bst2UI CCWGG 1 cut(s) 543
Bst4CI ACNGT 1 cut(s) 452
Bst6I CTCTTC 1 cut(s) 342
BstDEI CTNAG 5 cut(s) 228, 275, 359, 393, 402
BstF5I GGATG 1 cut(s) 510
BstKTI GATC 4 cut(s) 193, 310, 399, 500
BstMAI GTCTC 3 cut(s) 35, 458, 557
BstMBI GATC 4 cut(s) 190, 307, 396, 497
BstNI CCWGG 1 cut(s) 543
BstSCI CCNGG 1 cut(s) 541
BstV1I GCAGC 1 cut(s) 342
BstX2I RGATCY 2 cut(s) 190, 497
BstYI RGATCY 2 cut(s) 190, 497
BsuRI GGCC 1 cut(s) 88
BtsCI GGATG 1 cut(s) 510
BtsIMutI CAGTG 2 cut(s) 172, 333
CaiI CAGNNNCTG 1 cut(s) 488
CciI TCATGA 1 cut(s) 456
Cfr13I GGNCC 1 cut(s) 224
CviAII CATG 3 cut(s) 47, 428, 457
CviJI RGCY 7 cut(s) 88, 208, 304, 355, 365, 406, 485
CviKI_1 RGCY 7 cut(s) 88, 208, 304, 355, 365, 406, 485
DdeI CTNAG 5 cut(s) 228, 275, 359, 393, 402
DpnI GATC 4 cut(s) 192, 309, 398, 499
DpnII GATC 4 cut(s) 190, 307, 396, 497
Eam1104I CTCTTC 1 cut(s) 342
EarI CTCTTC 1 cut(s) 342
Ecl136II GAGCTC 1 cut(s) 365
Eco24I GRGCYC 1 cut(s) 367
Eco47I GGWCC 1 cut(s) 224
Eco53kI GAGCTC 1 cut(s) 365
EcoICRI GAGCTC 1 cut(s) 365
EcoRII CCWGG 1 cut(s) 541
EcoT22I ATGCAT 2 cut(s) 118, 138
EcoT38I GRGCYC 1 cut(s) 367
FaeI CATG 3 cut(s) 50, 431, 460
FatI CATG 3 cut(s) 46, 427, 456
FblI GTMKAC 1 cut(s) 283
Fnu4HI GCNGC 1 cut(s) 356
FokI GGATG 1 cut(s) 497
FriOI GRGCYC 1 cut(s) 367
Fsp4HI GCNGC 1 cut(s) 356
GluI GCNGC 1 cut(s) 356
HaeIII GGCC 1 cut(s) 88
Hin1II CATG 3 cut(s) 50, 431, 460
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 3 cut(s) 43, 439, 465
Hpy166II GTNNAC 2 cut(s) 170, 284
Hpy188I TCNGA 4 cut(s) 187, 231, 312, 490
Hpy188III TCNNGA 3 cut(s) 140, 457, 514
Hpy8I GTNNAC 2 cut(s) 170, 284
HpyCH4III ACNGT 1 cut(s) 452
HpyCH4V TGCA 3 cut(s) 82, 116, 136
HpyF3I CTNAG 5 cut(s) 228, 275, 359, 393, 402
Hsp92II CATG 3 cut(s) 50, 431, 460
Kzo9I GATC 4 cut(s) 190, 307, 396, 497
LpnPI CCDG 6 cut(s) 160, 220, 314, 527, 528, 555
Lsp1109I GCAGC 1 cut(s) 342
LweI GCATC 2 cut(s) 123, 145
MaeIII GTNAC 2 cut(s) 23, 380
MalI GATC 4 cut(s) 192, 309, 398, 499
MboI GATC 4 cut(s) 190, 307, 396, 497
MboII GAAGA 9 cut(s) 160, 163, 166, 265, 325, 356, 359, 429, 530
MflI RGATCY 2 cut(s) 190, 497
MhlI GDGCHC 1 cut(s) 367
MluCI AATT 3 cut(s) 239, 328, 517
MlyI GAGTC 1 cut(s) 37
MmeI TCCRAC 1 cut(s) 555
MnlI CCTC 7 cut(s) 31, 78, 136, 181, 237, 334, 538
Mph1103I ATGCAT 2 cut(s) 118, 138
MseI TTAA 5 cut(s) 93, 297, 318, 435, 558
MslI CAYNNNNRTG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 543
MvaI CCWGG 1 cut(s) 543
NdeII GATC 4 cut(s) 190, 307, 396, 497
NlaIII CATG 3 cut(s) 50, 431, 460
NlaIV GGNNCC 1 cut(s) 261
NsiI ATGCAT 2 cut(s) 118, 138
PagI TCATGA 1 cut(s) 456
PfeI GAWTC 2 cut(s) 439, 465
PflMI CCANNNNNTGG 1 cut(s) 95
PkrI GCNGC 1 cut(s) 357
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
Psp124BI GAGCTC 1 cut(s) 367
Psp6I CCWGG 1 cut(s) 541
PspGI CCWGG 1 cut(s) 541
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 1 cut(s) 224
PstNI CAGNNNCTG 1 cut(s) 488
PsuI RGATCY 2 cut(s) 190, 497
RseI CAYNNNNRTG 1 cut(s) 165
SacI GAGCTC 1 cut(s) 367
SaqAI TTAA 5 cut(s) 93, 297, 318, 435, 558
SatI GCNGC 1 cut(s) 356
Sau3AI GATC 4 cut(s) 190, 307, 396, 497
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 1 cut(s) 37
ScrFI CCNGG 1 cut(s) 543
SduI GDGCHC 1 cut(s) 367
SetI ASST 8 cut(s) 210, 293, 306, 357, 367, 408, 487, 530
SfaNI GCATC 2 cut(s) 123, 145
SinI GGWCC 1 cut(s) 224
SmiMI CAYNNNNRTG 1 cut(s) 165
Sse9I AATT 3 cut(s) 239, 328, 517
SsiI CCGC 1 cut(s) 215
SstI GAGCTC 1 cut(s) 367
StyD4I CCNGG 1 cut(s) 541
TaaI ACNGT 1 cut(s) 452
TaqI TCGA 3 cut(s) 306, 415, 504
TasI AATT 3 cut(s) 239, 328, 517
TfiI GAWTC 2 cut(s) 439, 465
Tru1I TTAA 5 cut(s) 93, 297, 318, 435, 558
Tru9I TTAA 5 cut(s) 93, 297, 318, 435, 558
TscAI CASTG 2 cut(s) 179, 340
TseI GCWGC 1 cut(s) 355
TspDTI ATGAA 3 cut(s) 66, 232, 473
TspRI CASTG 2 cut(s) 179, 340
Van91I CCANNNNNTGG 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 224
XapI RAATTY 2 cut(s) 239, 328
XmiI GTMKAC 1 cut(s) 283
Zsp2I ATGCAT 2 cut(s) 118, 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.