Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

17203742 .. 17205380

Gene Structure 1639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G42910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGATAGTTACTGGAGACTTAAAAACTTGGTGAATGATTTGCCAGTTAGTACTTCTTTAAGCCGACAAGGATCAATATACTCATGGACAGTAGATCAGTTTCAGACCAGCTTAGGGTTAGATTGTGGATCAATGAACATGGATGAGTTGGTTAAGCATATATCAAGTGCTGAAGAAACACAAGAGGGGTCGCAGAGGCAAGGCTCAACTACTCTGCCTCCAACACTTAGCAAACAAAATGTTGGTGAAGTTTGGAAATCTATCACAGAGGAAAAACACACCAATAACAATGGAGGAGTAACAAACATTACTCATCTTCAGGGACAACAAACCTTAGGGGAAATCACTCTTGAAGAGTTTTTCATCCGTGCTGGAGCAAGAGGAGGTAATACCAATGGTGGCTCCATTCATGACTCATCGTCATCGATTTCCGGTAATCCACACACTAGTTTGGGTGTTCAGATTCAGCCAAAAGCCATGGTTTCTGATTTTATGAACAATATGGTTCCAAGGAGTCATGATTCTTATTTGCATCAAAATGTGAATGGATCTATGTCAACATATCAACCACAACAATCTATCATGTCTATGCCAAATGGTTATTCTTATGGAAAACAAATCCGATTCTCAAATGGTTCCTTGGGATCTGGTAACCAAAGTCTCCAAGATACGAAGAGAAGCTTGGTCCCAAGTGTTGCGACAATTCCAAGTGAAGCCATAACATGTTCACCGGTTACCCCATTTCCAACATTAAATGGGAAACAAAAGATTAACGGTGAGTCTTCATTACTCTCACCATCTCCATACATTAGTAATGGTAGTACTAGTACAAGAGGTGGGAAGATTAATAGTGAAATTACCGCGGAAAAACAATTCGTTGACAAAAAGCTTAGGAGAAAGATTAAGAACCGAGAATCCGCAGCGAGATCACGGGCTCGAAAGCAAGCTCAAACTATGGAGGTTGAAGTTGAACTTGAAAACTTAAAGAAAGATTATGAAGAGCTACTAAAACAACATGTAGAGTTGCGGAAAAGACAAATGGAACCAGGAATGATTAGCCTTCATGAACGACCGGAGAGAAAGCTGAGGAGAACGAAATCGGACATCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023056 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1905959 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

370

Amino Acids

41.03

Weight (kDa)

9.33

Isoelectric Point (pI)

49.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	294 - 344	1.4e-07	bZIP transcription factor
bZIP_2	PF07716	295 - 344	1.2e-06	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	863
AciI	CCGC	4 cut(s)	861, 863, 918, 1027
AclWI	GGATC	4 cut(s)	79, 136, 556, 652
AcuI	CTGAAG	2 cut(s)	192, 302
AfaI	GTAC	3 cut(s)	52, 823, 829
AfiI	CCNNNNNNNGG	1 cut(s)	114
AflIII	ACRYGT	2 cut(s)	722, 1015
AgeI	ACCGGT	1 cut(s)	730
AgsI	TTSAA	4 cut(s)	353, 965, 971, 977
AhdI	GACNNNNNGTC	1 cut(s)	418
AhlI	ACTAGT	2 cut(s)	446, 824
AjnI	CCWGG	1 cut(s)	1045
AjuI	GAANNNNNNNTTGG	4 cut(s)	586, 618, 665, 697
AloI	GAACNNNNNNTCC	2 cut(s)	899, 931
AluBI	AGCT	6 cut(s)	111, 681, 889, 947, 1003, 1084
AluI	AGCT	6 cut(s)	111, 681, 889, 947, 1003, 1084
Alw26I	GTCTC	2 cut(s)	10, 665
AlwI	GGATC	4 cut(s)	79, 136, 556, 652
ApeKI	GCWGC	1 cut(s)	920
AseI	ATTAAT	1 cut(s)	846
AsiGI	ACCGGT	1 cut(s)	730
AspS9I	GGNCC	1 cut(s)	685
AsuHPI	GGTGA	5 cut(s)	43, 257, 720, 786, 788
AvaII	GGWCC	1 cut(s)	685
AxyI	CCTNAGG	1 cut(s)	334
BanII	GRGCYC	1 cut(s)	937
BbsI	GAAGAC	1 cut(s)	774
BbvCI	CCTCAGC	1 cut(s)	1085
BbvI	GCAGC	1 cut(s)	932
BccI	CCATC	1 cut(s)	805
BciT130I	CCWGG	1 cut(s)	1047
BcoDI	GTCTC	2 cut(s)	10, 665
BcuI	ACTAGT	2 cut(s)	446, 824
BfaI	CTAG	2 cut(s)	447, 825
BisI	GCNGC	1 cut(s)	921
BlsI	GCNGC	1 cut(s)	922
BmcAI	AGTACT	2 cut(s)	52, 823
Bme1390I	CCNGG	1 cut(s)	1047
Bme18I	GGWCC	1 cut(s)	685
BmeRI	GACNNNNNGTC	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	685
BmiI	GGNNCC	5 cut(s)	403, 507, 637, 687, 1044
BmrFI	CCNGG	1 cut(s)	1047
BmsI	GCATC	1 cut(s)	541
BpiI	GAAGAC	1 cut(s)	774
BpmI	CTGGAG	2 cut(s)	34, 393
Bpu10I	CCTNAGC	3 cut(s)	112, 890, 1085
Bsa29I	ATCGAT	1 cut(s)	425
BsaJI	CCNNGG	4 cut(s)	477, 509, 639, 861
BsaWI	WCCGGW	3 cut(s)	431, 730, 1072
BsaXI	ACNNNNNCTCC	2 cut(s)	202, 232
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
Bse118I	RCCGGY	1 cut(s)	730
Bse1I	ACTGG	2 cut(s)	17, 44
Bse21I	CCTNAGG	1 cut(s)	334
BseBI	CCWGG	1 cut(s)	1047
BseCI	ATCGAT	1 cut(s)	425
BseDI	CCNNGG	4 cut(s)	477, 509, 639, 861
BseGI	GGATG	2 cut(s)	148, 363
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	1076
BseNI	ACTGG	2 cut(s)	17, 44
BseRI	GAGGAG	3 cut(s)	309, 396, 1102
BseXI	GCAGC	1 cut(s)	932
Bsh1236I	CGCG	1 cut(s)	863
Bsh1285I	CGRYCG	1 cut(s)	1073
BshTI	ACCGGT	1 cut(s)	730
BshVI	ATCGAT	1 cut(s)	425
BsiEI	CGRYCG	1 cut(s)	1073
BsiSI	CCGG	3 cut(s)	432, 731, 1073
BslFI	GGGAC	2 cut(s)	336, 671
BslI	CCNNNNNNNGG	1 cut(s)	114
BsmAI	GTCTC	2 cut(s)	10, 665
BsmFI	GGGAC	2 cut(s)	336, 671
Bsp1286I	GDGCHC	1 cut(s)	937
Bsp143I	GATC	6 cut(s)	71, 94, 128, 548, 644, 926
Bsp19I	CCATGG	1 cut(s)	477
BspACI	CCGC	4 cut(s)	861, 863, 918, 1027
BspCNI	CTCAG	1 cut(s)	1077
BspDI	ATCGAT	1 cut(s)	425
BspFNI	CGCG	1 cut(s)	863
BspHI	TCATGA	3 cut(s)	409, 517, 1063
BspLI	GGNNCC	5 cut(s)	403, 507, 637, 687, 1044
BspPI	GGATC	4 cut(s)	79, 136, 556, 652
BspQI	GCTCTTC	1 cut(s)	993
BsrFI	RCCGGY	1 cut(s)	730
BsrI	ACTGG	2 cut(s)	17, 44
BssAI	RCCGGY	1 cut(s)	730
BssECI	CCNNGG	4 cut(s)	477, 509, 639, 861
BssMI	GATC	6 cut(s)	71, 94, 128, 548, 644, 926
BssT1I	CCWWGG	3 cut(s)	477, 509, 639
Bst2UI	CCWGG	1 cut(s)	1047
Bst4CI	ACNGT	2 cut(s)	91, 776
Bst6I	CTCTTC	3 cut(s)	348, 668, 993
BstC8I	GCNNGC	1 cut(s)	945
BstDEI	CTNAG	5 cut(s)	112, 227, 334, 890, 1085
BstDSI	CCRYGG	2 cut(s)	477, 861
BstEII	GGTNACC	2 cut(s)	650, 733
BstF5I	GGATG	2 cut(s)	148, 363
BstFNI	CGCG	1 cut(s)	863
BstKTI	GATC	6 cut(s)	74, 97, 131, 551, 647, 929
BstMAI	GTCTC	2 cut(s)	10, 665
BstMBI	GATC	6 cut(s)	71, 94, 128, 548, 644, 926
BstMCI	CGRYCG	1 cut(s)	1073
BstNI	CCWGG	1 cut(s)	1047
BstNSI	RCATGY	2 cut(s)	726, 1019
BstPI	GGTNACC	2 cut(s)	650, 733
BstSCI	CCNGG	1 cut(s)	1045
BstUI	CGCG	1 cut(s)	863
BstV1I	GCAGC	1 cut(s)	932
BstV2I	GAAGAC	1 cut(s)	774
BstX2I	RGATCY	2 cut(s)	548, 644
BstYI	RGATCY	2 cut(s)	548, 644
Bsu15I	ATCGAT	1 cut(s)	425
Bsu36I	CCTNAGG	1 cut(s)	334
BsuTUI	ATCGAT	1 cut(s)	425
BtgI	CCRYGG	2 cut(s)	477, 861
BtsCI	GGATG	2 cut(s)	148, 363
Cac8I	GCNNGC	1 cut(s)	945
CciI	TCATGA	3 cut(s)	409, 517, 1063
Cfr10I	RCCGGY	1 cut(s)	730
Cfr13I	GGNCC	1 cut(s)	685
Cfr42I	CCGCGG	1 cut(s)	864
ClaI	ATCGAT	1 cut(s)	425
Csp6I	GTAC	3 cut(s)	51, 822, 828
CspAI	ACCGGT	1 cut(s)	730
CviAII	CATG	9 cut(s)	84, 139, 410, 478, 518, 583, 723, 1016, 1064
CviQI	GTAC	3 cut(s)	51, 822, 828
DdeI	CTNAG	5 cut(s)	112, 227, 334, 890, 1085
DpnI	GATC	6 cut(s)	73, 96, 130, 550, 646, 928
DpnII	GATC	6 cut(s)	71, 94, 128, 548, 644, 926
DriI	GACNNNNNGTC	1 cut(s)	418
Eam1104I	CTCTTC	3 cut(s)	348, 668, 993
Eam1105I	GACNNNNNGTC	1 cut(s)	418
EarI	CTCTTC	3 cut(s)	348, 668, 993
Eco130I	CCWWGG	3 cut(s)	477, 509, 639
Eco24I	GRGCYC	1 cut(s)	937
Eco47I	GGWCC	1 cut(s)	685
Eco57I	CTGAAG	2 cut(s)	192, 302
Eco81I	CCTNAGG	1 cut(s)	334
Eco91I	GGTNACC	2 cut(s)	650, 733
EcoO65I	GGTNACC	2 cut(s)	650, 733
EcoRII	CCWGG	1 cut(s)	1045
EcoT14I	CCWWGG	3 cut(s)	477, 509, 639
EcoT38I	GRGCYC	1 cut(s)	937
ErhI	CCWWGG	3 cut(s)	477, 509, 639
FaeI	CATG	9 cut(s)	87, 142, 413, 481, 521, 586, 726, 1019, 1067
FalI	AAGNNNNNCTT	4 cut(s)	665, 697, 957, 989
FaqI	GGGAC	2 cut(s)	336, 671
FatI	CATG	9 cut(s)	83, 138, 409, 477, 517, 582, 722, 1015, 1063
Fnu4HI	GCNGC	1 cut(s)	921
FokI	GGATG	2 cut(s)	155, 350
FriOI	GRGCYC	1 cut(s)	937
Fsp4HI	GCNGC	1 cut(s)	921
FspBI	CTAG	2 cut(s)	447, 825
GluI	GCNGC	1 cut(s)	921
GsuI	CTGGAG	2 cut(s)	34, 393
HapII	CCGG	3 cut(s)	432, 731, 1073
Hin1II	CATG	9 cut(s)	87, 142, 413, 481, 521, 586, 726, 1019, 1067
HincII	GTYRAC	2 cut(s)	558, 880
HindII	GTYRAC	2 cut(s)	558, 880
HindIII	AAGCTT	2 cut(s)	679, 887
HinfI	GANTC	7 cut(s)	413, 463, 514, 521, 624, 779, 914
HpaII	CCGG	3 cut(s)	432, 731, 1073
HphI	GGTGA	5 cut(s)	43, 257, 720, 786, 788
Hpy166II	GTNNAC	3 cut(s)	558, 728, 880
Hpy188I	TCNGA	5 cut(s)	105, 462, 487, 623, 1102
Hpy188III	TCNNGA	4 cut(s)	350, 410, 518, 1064
Hpy8I	GTNNAC	3 cut(s)	558, 728, 880
HpyAV	CCTTC	1 cut(s)	1070
HpyCH4III	ACNGT	2 cut(s)	91, 776
HpyCH4V	TGCA	1 cut(s)	532
HpyF3I	CTNAG	5 cut(s)	112, 227, 334, 890, 1085
Hsp92II	CATG	9 cut(s)	87, 142, 413, 481, 521, 586, 726, 1019, 1067
KspI	CCGCGG	1 cut(s)	864
Kzo9I	GATC	6 cut(s)	71, 94, 128, 548, 644, 926
LguI	GCTCTTC	1 cut(s)	993
LmnI	GCTCC	2 cut(s)	374, 407
Lsp1109I	GCAGC	1 cut(s)	932
LweI	GCATC	1 cut(s)	541
MaeI	CTAG	2 cut(s)	447, 825
MaeIII	GTNAC	4 cut(s)	8, 298, 650, 733
MalI	GATC	6 cut(s)	73, 96, 130, 550, 646, 928
MboI	GATC	6 cut(s)	71, 94, 128, 548, 644, 926
MboII	GAAGA	7 cut(s)	185, 308, 365, 685, 774, 853, 1010
MflI	RGATCY	2 cut(s)	548, 644
MhlI	GDGCHC	1 cut(s)	937
MluCI	AATT	3 cut(s)	702, 855, 872
MlyI	GAGTC	3 cut(s)	407, 523, 788
MmeI	TCCRAC	2 cut(s)	245, 770
MseI	TTAA	8 cut(s)	21, 59, 153, 752, 771, 846, 903, 983
MslI	CAYNNNNRTG	2 cut(s)	537, 587
MspA1I	CMGCKG	1 cut(s)	863
MspI	CCGG	3 cut(s)	432, 731, 1073
MspR9I	CCNGG	1 cut(s)	1047
MvaI	CCWGG	1 cut(s)	1047
MvnI	CGCG	1 cut(s)	863
NcoI	CCATGG	1 cut(s)	477
NdeII	GATC	6 cut(s)	71, 94, 128, 548, 644, 926
NlaIII	CATG	9 cut(s)	87, 142, 413, 481, 521, 586, 726, 1019, 1067
NlaIV	GGNNCC	5 cut(s)	403, 507, 637, 687, 1044
NspI	RCATGY	2 cut(s)	726, 1019
PagI	TCATGA	3 cut(s)	409, 517, 1063
PciI	ACATGT	2 cut(s)	722, 1015
PciSI	GCTCTTC	1 cut(s)	993
PfeI	GAWTC	4 cut(s)	463, 521, 624, 914
PinAI	ACCGGT	1 cut(s)	730
PkrI	GCNGC	1 cut(s)	922
PleI	GAGTC	3 cut(s)	407, 522, 787
PpsI	GAGTC	3 cut(s)	407, 522, 787
PscI	ACATGT	2 cut(s)	722, 1015
PshBI	ATTAAT	1 cut(s)	846
Psp6I	CCWGG	1 cut(s)	1045
PspEI	GGTNACC	2 cut(s)	650, 733
PspGI	CCWGG	1 cut(s)	1045
PspN4I	GGNNCC	5 cut(s)	403, 507, 637, 687, 1044
PspPI	GGNCC	1 cut(s)	685
PsuI	RGATCY	2 cut(s)	548, 644
RsaI	GTAC	3 cut(s)	52, 823, 829
RsaNI	GTAC	3 cut(s)	51, 822, 828
RseI	CAYNNNNRTG	2 cut(s)	537, 587
SacII	CCGCGG	1 cut(s)	864
SapI	GCTCTTC	1 cut(s)	993
SaqAI	TTAA	8 cut(s)	21, 59, 153, 752, 771, 846, 903, 983
SatI	GCNGC	1 cut(s)	921
Sau3AI	GATC	6 cut(s)	71, 94, 128, 548, 644, 926
Sau96I	GGNCC	1 cut(s)	685
ScaI	AGTACT	2 cut(s)	52, 823
SchI	GAGTC	3 cut(s)	407, 523, 788
ScrFI	CCNGG	1 cut(s)	1047
SduI	GDGCHC	1 cut(s)	937
SfaNI	GCATC	1 cut(s)	541
Sfr303I	CCGCGG	1 cut(s)	864
SgrBI	CCGCGG	1 cut(s)	864
SinI	GGWCC	1 cut(s)	685
SmiMI	CAYNNNNRTG	2 cut(s)	537, 587
SpeI	ACTAGT	2 cut(s)	446, 824
Sse9I	AATT	3 cut(s)	702, 855, 872
SsiI	CCGC	4 cut(s)	861, 863, 918, 1027
SspMI	CTAG	2 cut(s)	447, 825
StyD4I	CCNGG	1 cut(s)	1045
StyI	CCWWGG	3 cut(s)	477, 509, 639
TaaI	ACNGT	2 cut(s)	91, 776
TaqI	TCGA	2 cut(s)	425, 937
TasI	AATT	3 cut(s)	702, 855, 872
TatI	WGTACW	3 cut(s)	50, 821, 827
TfiI	GAWTC	4 cut(s)	463, 521, 624, 914
Tru1I	TTAA	8 cut(s)	21, 59, 153, 752, 771, 846, 903, 983
Tru9I	TTAA	8 cut(s)	21, 59, 153, 752, 771, 846, 903, 983
TseI	GCWGC	1 cut(s)	920
TspDTI	ATGAA	8 cut(s)	149, 352, 398, 509, 774, 1011, 1052, 1080
TspGWI	ACGGA	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	685
VspI	ATTAAT	1 cut(s)	846
XceI	RCATGY	2 cut(s)	726, 1019
XspI	CTAG	2 cut(s)	447, 825
ZrmI	AGTACT	2 cut(s)	52, 823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.