AT5G46830
BHLH Family

transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
N/A
Physical Location & Seq
Forward (+)
19002564 .. 19004384
1821 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G46830.1

Sequence Viewer

Length: 1536 bp
ATGATTAATACCGACGATAACTTATTGATGATCGAAGCTCTCTTGACCTCCGATCCGTCGCCACCATTACTTCCGGCGAATCTCAGCCTCGAGACTACTCTCCCGAAGCGTTTACATGCTGTGTTGAATGGAACCCACGAGCCCTGGAGTTACGCCATTTTCTGGAAACCGTCGTACGATGACTTTTCCGGTGAAGCAGTTCTCAAATGGGGCGACGGAGTTTACACTGGTGGCAACGAGGAAAAGACACGAGGGAGGTTGAGGAGGAAGAAGACGATTCTGTCGTCTCCGGAGGAGAAAGAGCGTCGGAGTAATGTTATTCGGGAGCTTAACTTGATGATCTCCGGCGAAGCGTTTCCGGTGGTTGAAGACGACGTCAGTGATGACGATGACGTGGAAGTGACGGATATGGAGTGGTTCTTCTTGGTTTCCATGACGTGGAGTTTTGGTAACGGATCCGGGTTAGCGGGTAAGGCGTTTGCTAGCTATAACCCGGTTTTGGTTACCGGTTCGGATCTGATTTACGGGTCGGGTTGTGATCGGGCTAAACAAGGAGGGGATGTAGGGTTACAGACCATCTTGTGTATTCCTTCACATAACGGAGTGTTGGAGCTTGCATCCACGGAGGAGATCCGACCAAATTCGGATCTTTTTAATAGGATCCGGTTTCTTTTTGGAGGATCCAAATATTTTTCTGGAGCCCCGAATTCGAACTCGGAGCTTTTCCCATTTCAGTTAGAGAGCAGTTGTTCAAGTACTGTAACCGGTAACCCGAATCCTAGTCCGGTTTATCTACAGAACCGGTATAATTTGAACTTCTCGACGTCATCTTCCACATTGGCGAGAGCTCCATGCGGCGATGTACTGAGTTTTGGCGAGAATGTTAAACAGAGTTTTGAAAATCGGAACCCTAATACTTATTCTGATCAGATTCAAAACGTCGTCCCTCACGCGACGGTGATGCTGGAGAAGAAGAAGGGAAAAAAGCGCGGGAGAAAACCGGCGCATGGTAGAGACAAGCCTTTGAACCACGTGGAAGCAGAGAGGATGAGACGTGAGAAGCTAAACCACAGATTCTACGCATTACGAGCGGTTGTACCAAACGTATCGAAAATGGACAAAACGTCGTTGCTCGAAGACGCGGTTTGTTACATAAACGAGCTGAAATCAAAAGCTGAAAACGTTGAATTGGAGAAACATGCGATTGAGATTCAGTTCAATGAACTCAAGGAGATTGCAGGACAACGAAACGCAATTCCTAGCGTTTGTAAATACGAGGAAAAGGCATCAGAGATGATGAAGATCGAAGTGAAGATTATGGAAAGTGATGATGCAATGGTTAGAGTTGAATCAAGGAAGGATCATCATCCAGGAGCGAGATTGATGAATGCTTTGATGGATTTGGAGTTAGAAGTGAATCATGCGAGCATTTCTGTGATGAACGATCTTATGATACAACAAGCGAACGTGAAGATGGGGTTGAGAATCTACAAGCAGGAAGAGCTTAGGGATTTGTTGATGTCGAAAATTAGCTGA

Protein Analysis

511

Amino Acids

57.35

Weight (kDa)

5.79

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 35 - 225 2.1e-47 bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH PF00010 343 - 389 4.3e-11 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 280
AatII GACGTC 2 cut(s) 378, 827
AccB7I CCANNNNNTGG 2 cut(s) 162, 438
AccBSI CCGCTC 1 cut(s) 1091
AccII CGCG 3 cut(s) 953, 990, 1142
AccIII TCCGGA 1 cut(s) 289
AciI CCGC 5 cut(s) 467, 855, 990, 1091, 1142
AclI AACGTT 1 cut(s) 1182
AcsI RAATTY 2 cut(s) 640, 706
AcvI CACGTG 1 cut(s) 1033
AcyI GRCGYC 2 cut(s) 375, 824
AfaI GTAC 4 cut(s) 176, 757, 864, 1098
AfiI CCNNNNNNNGG 4 cut(s) 162, 438, 499, 1007
AgeI ACCGGT 3 cut(s) 506, 764, 801
AhdI GACNNNNNGTC 1 cut(s) 1123
AjiI CACGTC 3 cut(s) 394, 438, 1055
AjnI CCWGG 2 cut(s) 143, 1369
Alw21I GWGCWC 1 cut(s) 850
Alw26I GTCTC 4 cut(s) 86, 291, 1008, 1045
Ama87I CYCGRG 1 cut(s) 89
Aor13HI TCCGGA 1 cut(s) 289
ApoI RAATTY 2 cut(s) 640, 706
AseI ATTAAT 1 cut(s) 6
AsiGI ACCGGT 3 cut(s) 506, 764, 801
Asp700I GAANNNNTTC 2 cut(s) 198, 354
AspLEI GCGC 2 cut(s) 990, 1006
AsuC2I CCSGG 2 cut(s) 460, 494
AsuHPI GGTGA 2 cut(s) 203, 970
AsuII TTCGAA 1 cut(s) 710
AsuNHI GCTAGC 1 cut(s) 482
AvaI CYCGRG 1 cut(s) 89
BamHI GGATCC 3 cut(s) 455, 660, 680
BanII GRGCYC 3 cut(s) 144, 703, 850
BauI CACGAG 2 cut(s) 137, 249
BbrPI CACGTG 1 cut(s) 1033
BbsI GAAGAC 3 cut(s) 278, 375, 1143
Bbv12I GWGCWC 1 cut(s) 850
BccI CCATC 3 cut(s) 584, 1390, 1468
BcgI CGANNNNNNTGC 2 cut(s) 943, 977
BciT130I CCWGG 2 cut(s) 145, 1371
BclI TGATCA 1 cut(s) 925
BcnI CCSGG 2 cut(s) 460, 494
BcoDI GTCTC 4 cut(s) 86, 291, 1008, 1045
BfaI CTAG 3 cut(s) 483, 780, 1260
BfmI CTRYAG 1 cut(s) 794
BisI GCNGC 1 cut(s) 856
BlsI GCNGC 1 cut(s) 857
BmcAI AGTACT 1 cut(s) 757
Bme1390I CCNGG 4 cut(s) 145, 460, 494, 1371
BmeRI GACNNNNNGTC 1 cut(s) 1123
BmeT110I CYCGRG 1 cut(s) 89
BmgBI CACGTC 3 cut(s) 394, 438, 1055
BmiI GGNNCC 6 cut(s) 133, 457, 662, 682, 700, 908
BmrFI CCNGG 4 cut(s) 145, 460, 494, 1371
BmsI GCATC 4 cut(s) 626, 951, 1295, 1321
BmtI GCTAGC 1 cut(s) 486
BpiI GAAGAC 3 cut(s) 278, 375, 1143
BpmI CTGGAG 3 cut(s) 166, 717, 986
Bpu10I CCTNAGC 1 cut(s) 1505
Bpu14I TTCGAA 1 cut(s) 710
BpuEI CTTGAG 1 cut(s) 1211
BpuMI CCSGG 2 cut(s) 460, 494
BsaAI YACGTR 1 cut(s) 1033
BsaBI GATNNNNATC 2 cut(s) 1301, 1365
BsaHI GRCGYC 2 cut(s) 375, 824
BsaJI CCNNGG 2 cut(s) 143, 621
BsaWI WCCGGW 8 cut(s) 188, 289, 358, 506, 663, 764, 784, 801
BsaXI ACNNNNNCTCC 4 cut(s) 433, 463, 546, 576
Bsc4I CCNNNNNNNGG 4 cut(s) 162, 438, 499, 1007
Bse118I RCCGGY 4 cut(s) 506, 764, 801, 1000
Bse1I ACTGG 1 cut(s) 232
Bse3DI GCAATG 1 cut(s) 1341
Bse8I GATNNNNATC 2 cut(s) 1301, 1365
BseAI TCCGGA 1 cut(s) 289
BseBI CCWGG 2 cut(s) 145, 1371
BseDI CCNNGG 2 cut(s) 143, 621
BseGI GGATG 4 cut(s) 565, 617, 1053, 1366
BseJI GATNNNNATC 2 cut(s) 1301, 1365
BseLI CCNNNNNNNGG 4 cut(s) 162, 438, 499, 1007
BseMI GCAATG 1 cut(s) 1341
BseMII CTCAG 2 cut(s) 97, 857
BseNI ACTGG 1 cut(s) 232
BseRI GAGGAG 3 cut(s) 277, 308, 641
Bsh1236I CGCG 3 cut(s) 953, 990, 1142
BshTI ACCGGT 3 cut(s) 506, 764, 801
BsiHKAI GWGCWC 1 cut(s) 850
BsiHKCI CYCGRG 1 cut(s) 89
BsiWI CGTACG 1 cut(s) 174
BslFI GGGAC 1 cut(s) 929
BslI CCNNNNNNNGG 4 cut(s) 162, 438, 499, 1007
BsmAI GTCTC 4 cut(s) 86, 291, 1008, 1045
BsmBI CGTCTC 2 cut(s) 291, 1045
BsmFI GGGAC 1 cut(s) 929
BsmI GAATGC 1 cut(s) 1393
BsoBI CYCGRG 1 cut(s) 89
Bsp119I TTCGAA 1 cut(s) 710
Bsp1286I GDGCHC 3 cut(s) 144, 703, 850
Bsp13I TCCGGA 1 cut(s) 289
BspACI CCGC 5 cut(s) 467, 855, 990, 1091, 1142
BspCNI CTCAG 2 cut(s) 96, 858
BspEI TCCGGA 1 cut(s) 289
BspFNI CGCG 3 cut(s) 953, 990, 1142
BspLI GGNNCC 6 cut(s) 133, 457, 662, 682, 700, 908
BspOI GCTAGC 1 cut(s) 486
BspQI GCTCTTC 1 cut(s) 1494
BspT104I TTCGAA 1 cut(s) 710
BsrBI CCGCTC 1 cut(s) 1091
BsrDI GCAATG 1 cut(s) 1341
BsrFI RCCGGY 4 cut(s) 506, 764, 801, 1000
BsrI ACTGG 1 cut(s) 232
BssAI RCCGGY 4 cut(s) 506, 764, 801, 1000
BssECI CCNNGG 2 cut(s) 143, 621
BssNI GRCGYC 2 cut(s) 375, 824
BssSI CACGAG 2 cut(s) 137, 249
Bst2BI CACGAG 2 cut(s) 137, 249
Bst2UI CCWGG 2 cut(s) 145, 1371
Bst4CI ACNGT 3 cut(s) 171, 760, 958
Bst6I CTCTTC 1 cut(s) 1494
BstACI GRCGYC 2 cut(s) 375, 824
BstBAI YACGTR 1 cut(s) 1033
BstBI TTCGAA 1 cut(s) 710
BstC8I GCNNGC 3 cut(s) 484, 615, 1426
BstDEI CTNAG 3 cut(s) 83, 866, 1505
BstDSI CCRYGG 1 cut(s) 621
BstEII GGTNACC 2 cut(s) 502, 767
BstF5I GGATG 4 cut(s) 565, 617, 1053, 1366
BstFNI CGCG 3 cut(s) 953, 990, 1142
BstHHI GCGC 2 cut(s) 990, 1006
BstMAI GTCTC 4 cut(s) 86, 291, 1008, 1045
BstMWI GCNNNNNNNGC 3 cut(s) 473, 1088, 1501
BstNI CCWGG 2 cut(s) 145, 1371
BstNSI RCATGY 2 cut(s) 119, 1202
BstPI GGTNACC 2 cut(s) 502, 767
BstSCI CCNGG 4 cut(s) 143, 458, 492, 1369
BstSFI CTRYAG 1 cut(s) 794
BstUI CGCG 3 cut(s) 953, 990, 1142
BstV2I GAAGAC 3 cut(s) 278, 375, 1143
BstX2I RGATCY 6 cut(s) 455, 514, 630, 646, 660, 680
BstYI RGATCY 6 cut(s) 455, 514, 630, 646, 660, 680
BtgI CCRYGG 1 cut(s) 621
BtgZI GCGATG 1 cut(s) 873
BtrI CACGTC 3 cut(s) 394, 438, 1055
BtsCI GGATG 4 cut(s) 565, 617, 1053, 1366
BtsIMutI CAGTG 2 cut(s) 225, 385
Cac8I GCNNGC 3 cut(s) 484, 615, 1426
CfoI GCGC 2 cut(s) 990, 1006
Cfr10I RCCGGY 4 cut(s) 506, 764, 801, 1000
CseI GACGC 2 cut(s) 293, 1148
Csp6I GTAC 4 cut(s) 175, 756, 863, 1097
CspAI ACCGGT 3 cut(s) 506, 764, 801
CviAII CATG 6 cut(s) 116, 433, 852, 1007, 1199, 1421
CviQI GTAC 4 cut(s) 175, 756, 863, 1097
DdeI CTNAG 3 cut(s) 83, 866, 1505
DrdI GACNNNNNNGTC 1 cut(s) 280
DriI GACNNNNNGTC 1 cut(s) 1123
DseDI GACNNNNNNGTC 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 1494
Eam1105I GACNNNNNGTC 1 cut(s) 1123
EarI CTCTTC 1 cut(s) 1494
Ecl136II GAGCTC 1 cut(s) 848
Eco24I GRGCYC 3 cut(s) 144, 703, 850
Eco53kI GAGCTC 1 cut(s) 848
Eco72I CACGTG 1 cut(s) 1033
Eco88I CYCGRG 1 cut(s) 89
Eco91I GGTNACC 2 cut(s) 502, 767
EcoICRI GAGCTC 1 cut(s) 848
EcoO65I GGTNACC 2 cut(s) 502, 767
EcoRI GAATTC 1 cut(s) 706
EcoRII CCWGG 2 cut(s) 143, 1369
EcoT38I GRGCYC 3 cut(s) 144, 703, 850
Esp3I CGTCTC 2 cut(s) 291, 1045
FaeI CATG 6 cut(s) 119, 436, 855, 1010, 1202, 1424
FaqI GGGAC 1 cut(s) 929
FatI CATG 6 cut(s) 115, 432, 851, 1006, 1198, 1420
FauI CCCGC 2 cut(s) 460, 983
FbaI TGATCA 1 cut(s) 925
Fnu4HI GCNGC 1 cut(s) 856
FokI GGATG 4 cut(s) 572, 604, 1060, 1353
FriOI GRGCYC 3 cut(s) 144, 703, 850
Fsp4HI GCNGC 1 cut(s) 856
FspBI CTAG 3 cut(s) 483, 780, 1260
GlaI GCGC 2 cut(s) 989, 1005
GluI GCNGC 1 cut(s) 856
GsuI CTGGAG 3 cut(s) 166, 717, 986
HgaI GACGC 2 cut(s) 293, 1148
HhaI GCGC 2 cut(s) 990, 1006
Hin1I GRCGYC 2 cut(s) 375, 824
Hin1II CATG 6 cut(s) 119, 436, 855, 1010, 1202, 1424
Hin6I GCGC 2 cut(s) 988, 1004
HinP1I GCGC 2 cut(s) 988, 1004
HinfI GANTC 9 cut(s) 79, 277, 775, 931, 1074, 1210, 1349, 1417, 1485
HphI GGTGA 2 cut(s) 203, 970
Hpy166II GTNNAC 2 cut(s) 113, 223
Hpy188III TCNNGA 8 cut(s) 43, 91, 103, 163, 290, 323, 696, 820
Hpy8I GTNNAC 2 cut(s) 113, 223
HpyAV CCTTC 3 cut(s) 600, 970, 1351
HpyCH4III ACNGT 3 cut(s) 171, 760, 958
HpyCH4V TGCA 3 cut(s) 617, 1238, 1334
HpyF10VI GCNNNNNNNGC 3 cut(s) 473, 1088, 1501
HpyF3I CTNAG 3 cut(s) 83, 866, 1505
Hsp92I GRCGYC 2 cut(s) 375, 824
Hsp92II CATG 6 cut(s) 119, 436, 855, 1010, 1202, 1424
HspAI GCGC 2 cut(s) 988, 1004
Kpn2I TCCGGA 1 cut(s) 289
Ksp22I TGATCA 1 cut(s) 925
LguI GCTCTTC 1 cut(s) 1494
LmnI GCTCC 6 cut(s) 325, 610, 698, 718, 853, 1373
LweI GCATC 4 cut(s) 626, 951, 1295, 1321
MaeI CTAG 3 cut(s) 483, 780, 1260
MaeIII GTNAC 8 cut(s) 149, 400, 449, 502, 567, 760, 767, 1148
MbiI CCGCTC 1 cut(s) 1091
MflI RGATCY 6 cut(s) 455, 514, 630, 646, 660, 680
MhlI GDGCHC 3 cut(s) 144, 703, 850
MluCI AATT 6 cut(s) 640, 706, 808, 1187, 1254, 1527
MmeI TCCRAC 3 cut(s) 287, 588, 658
MroI TCCGGA 1 cut(s) 289
MroXI GAANNNNTTC 2 cut(s) 198, 354
MseI TTAA 4 cut(s) 6, 330, 654, 885
MslI CAYNNNNRTG 1 cut(s) 1433
MspR9I CCNGG 4 cut(s) 145, 460, 494, 1371
Mva1269I GAATGC 1 cut(s) 1393
MvaI CCWGG 2 cut(s) 145, 1371
MvnI CGCG 3 cut(s) 953, 990, 1142
MwoI GCNNNNNNNGC 3 cut(s) 473, 1088, 1501
NciI CCSGG 2 cut(s) 460, 494
NheI GCTAGC 1 cut(s) 482
NlaIII CATG 6 cut(s) 119, 436, 855, 1010, 1202, 1424
NlaIV GGNNCC 6 cut(s) 133, 457, 662, 682, 700, 908
NmuCI GTSAC 1 cut(s) 400
NspI RCATGY 2 cut(s) 119, 1202
NspV TTCGAA 1 cut(s) 710
PaeR7I CTCGAG 1 cut(s) 89
PciSI GCTCTTC 1 cut(s) 1494
PcsI WCGNNNNNNNCGW 1 cut(s) 281
PctI GAATGC 1 cut(s) 1393
PdmI GAANNNNTTC 2 cut(s) 198, 354
PfeI GAWTC 9 cut(s) 79, 277, 775, 931, 1074, 1210, 1349, 1417, 1485
Pfl23II CGTACG 1 cut(s) 174
PflFI GACNNNGTC 1 cut(s) 374
PflMI CCANNNNNTGG 2 cut(s) 162, 438
PfoI TCCNGGA 1 cut(s) 1369
PinAI ACCGGT 3 cut(s) 506, 764, 801
PkrI GCNGC 1 cut(s) 857
PmaCI CACGTG 1 cut(s) 1033
PmlI CACGTG 1 cut(s) 1033
Ppu21I YACGTR 1 cut(s) 1033
PshBI ATTAAT 1 cut(s) 6
Psp124BI GAGCTC 1 cut(s) 850
Psp1406I AACGTT 1 cut(s) 1182
Psp6I CCWGG 2 cut(s) 143, 1369
PspCI CACGTG 1 cut(s) 1033
PspEI GGTNACC 2 cut(s) 502, 767
PspGI CCWGG 2 cut(s) 143, 1369
PspLI CGTACG 1 cut(s) 174
PspN4I GGNNCC 6 cut(s) 133, 457, 662, 682, 700, 908
PsuI RGATCY 6 cut(s) 455, 514, 630, 646, 660, 680
PsyI GACNNNGTC 1 cut(s) 374
RsaI GTAC 4 cut(s) 176, 757, 864, 1098
RsaNI GTAC 4 cut(s) 175, 756, 863, 1097
RseI CAYNNNNRTG 1 cut(s) 1433
SacI GAGCTC 1 cut(s) 850
SapI GCTCTTC 1 cut(s) 1494
SaqAI TTAA 4 cut(s) 6, 330, 654, 885
SatI GCNGC 1 cut(s) 856
ScaI AGTACT 1 cut(s) 757
ScrFI CCNGG 4 cut(s) 145, 460, 494, 1371
SduI GDGCHC 3 cut(s) 144, 703, 850
SfaNI GCATC 4 cut(s) 626, 951, 1295, 1321
SfcI CTRYAG 1 cut(s) 794
Sfr274I CTCGAG 1 cut(s) 89
SfuI TTCGAA 1 cut(s) 710
SlaI CTCGAG 1 cut(s) 89
SmiMI CAYNNNNRTG 1 cut(s) 1433
SmlI CTYRAG 2 cut(s) 89, 1226
SmoI CTYRAG 2 cut(s) 89, 1226
Sse9I AATT 6 cut(s) 640, 706, 808, 1187, 1254, 1527
SsiI CCGC 5 cut(s) 467, 855, 990, 1091, 1142
SspI AATATT 1 cut(s) 689
SspMI CTAG 3 cut(s) 483, 780, 1260
SstI GAGCTC 1 cut(s) 850
StyD4I CCNGG 4 cut(s) 143, 458, 492, 1369
TaaI ACNGT 3 cut(s) 171, 760, 958
TaqI TCGA 8 cut(s) 33, 90, 710, 821, 1109, 1134, 1305, 1523
TasI AATT 6 cut(s) 640, 706, 808, 1187, 1254, 1527
TatI WGTACW 2 cut(s) 755, 862
TauI GCSGC 1 cut(s) 858
TfiI GAWTC 9 cut(s) 79, 277, 775, 931, 1074, 1210, 1349, 1417, 1485
Tru1I TTAA 4 cut(s) 6, 330, 654, 885
Tru9I TTAA 4 cut(s) 6, 330, 654, 885
TscAI CASTG 2 cut(s) 232, 385
TseFI GTSAC 1 cut(s) 400
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 4 cut(s) 1236, 1313, 1400, 1454
TspGWI ACGGA 6 cut(s) 45, 231, 419, 468, 615, 638
TspRI CASTG 2 cut(s) 232, 385
Tth111I GACNNNGTC 1 cut(s) 374
Van91I CCANNNNNTGG 2 cut(s) 162, 438
VspI ATTAAT 1 cut(s) 6
XapI RAATTY 2 cut(s) 640, 706
XceI RCATGY 2 cut(s) 119, 1202
XhoI CTCGAG 1 cut(s) 89
XmnI GAANNNNTTC 2 cut(s) 198, 354
XspI CTAG 3 cut(s) 483, 780, 1260
ZraI GACGTC 2 cut(s) 376, 825
ZrmI AGTACT 1 cut(s) 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.