AT5G47290
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
N/A
Physical Location & Seq
Reverse (-)
19197040 .. 19197431
392 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G47290.1

Sequence Viewer

Length: 291 bp
ATGGCTGGTACGATGAAGTGGACTTGGGAGGAGAACAAAGCTTTCGAGGTTGCACTCGTGCAAGTCCCGGATTCGCCGGCAAAGCTGGAGATTATCGCTGCACAAATGAGAACGTCGGTGGATGAGATCAAATACCACTACGATAAGCTGCTCCAAGATATTGCTGTTATCGAATCCGGCAGAGATGTTGTGCCCGAGTACTCACCACGTTCAGCGACGCCGATAGTGGCGAAGAAGGGAACTCGTTGGTCAGCCCAAGAACACGAATCATATGATGAATCTCTCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

96

Amino Acids

10.9

Weight (kDa)

4.94

Isoelectric Point (pI)

63.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 218
AfaI GTAC 2 cut(s) 10, 200
AluBI AGCT 3 cut(s) 41, 85, 148
AluI AGCT 3 cut(s) 41, 85, 148
Ama87I CYCGRG 1 cut(s) 194
ApeKI GCWGC 2 cut(s) 98, 148
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 195
AvaI CYCGRG 1 cut(s) 194
BaeGI GKGCMC 1 cut(s) 195
BauI CACGAG 1 cut(s) 56
BbvI GCAGC 2 cut(s) 85, 135
BcnI CCSGG 1 cut(s) 68
BisI GCNGC 2 cut(s) 99, 149
BlsI GCNGC 2 cut(s) 100, 150
BmcAI AGTACT 1 cut(s) 200
Bme1390I CCNGG 1 cut(s) 68
BmeT110I CYCGRG 1 cut(s) 194
BmrFI CCNGG 1 cut(s) 68
BpmI CTGGAG 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 68
BsaHI GRCGYC 1 cut(s) 218
Bse118I RCCGGY 1 cut(s) 76
BseGI GGATG 1 cut(s) 127
BseRI GAGGAG 1 cut(s) 44
BseSI GKGCMC 1 cut(s) 195
BseXI GCAGC 2 cut(s) 85, 135
BsgI GTGCAG 1 cut(s) 84
BsiHKCI CYCGRG 1 cut(s) 194
BsiSI CCGG 3 cut(s) 68, 77, 177
BslFI GGGAC 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 50
BsoBI CYCGRG 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 195
Bsp143I GATC 1 cut(s) 126
BsrFI RCCGGY 1 cut(s) 76
BssAI RCCGGY 1 cut(s) 76
BssMI GATC 1 cut(s) 126
BssNI GRCGYC 1 cut(s) 218
BssSI CACGAG 1 cut(s) 56
Bst2BI CACGAG 1 cut(s) 56
BstACI GRCGYC 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 78
BstF5I GGATG 1 cut(s) 127
BstKTI GATC 1 cut(s) 129
BstMBI GATC 1 cut(s) 126
BstMWI GCNNNNNNNGC 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 66
BstSLI GKGCMC 1 cut(s) 195
BstV1I GCAGC 2 cut(s) 85, 135
BtsCI GGATG 1 cut(s) 127
Cac8I GCNNGC 1 cut(s) 78
Cfr10I RCCGGY 1 cut(s) 76
CseI GACGC 1 cut(s) 226
Csp6I GTAC 2 cut(s) 9, 199
CviJI RGCY 5 cut(s) 5, 41, 85, 148, 254
CviKI_1 RGCY 5 cut(s) 5, 41, 85, 148, 254
CviQI GTAC 2 cut(s) 9, 199
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
Eco88I CYCGRG 1 cut(s) 194
FaiI YATR 2 cut(s) 271, 273
FaqI GGGAC 1 cut(s) 50
FauNDI CATATG 1 cut(s) 271
Fnu4HI GCNGC 2 cut(s) 99, 149
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 2 cut(s) 99, 149
GluI GCNGC 2 cut(s) 99, 149
GsuI CTGGAG 1 cut(s) 107
HapII CCGG 3 cut(s) 68, 77, 177
HgaI GACGC 1 cut(s) 226
Hin1I GRCGYC 1 cut(s) 218
HindIII AAGCTT 1 cut(s) 39
HinfI GANTC 4 cut(s) 71, 173, 266, 278
HpaII CCGG 3 cut(s) 68, 77, 177
HphI GGTGA 1 cut(s) 195
Hpy166II GTNNAC 1 cut(s) 21
Hpy188I TCNGA 1 cut(s) 290
Hpy8I GTNNAC 1 cut(s) 21
Hpy99I CGWCG 2 cut(s) 118, 220
HpyAV CCTTC 1 cut(s) 229
HpyCH4IV ACGT 2 cut(s) 113, 208
HpyCH4V TGCA 3 cut(s) 53, 61, 101
HpyF10VI GCNNNNNNNGC 1 cut(s) 82
HpySE526I ACGT 2 cut(s) 113, 208
Hsp92I GRCGYC 1 cut(s) 218
KroI GCCGGC 1 cut(s) 76
KroNI GCCGGC 1 cut(s) 78
Kzo9I GATC 1 cut(s) 126
LmnI GCTCC 1 cut(s) 156
LpnPI CCDG 4 cut(s) 71, 81, 90, 190
Lsp1109I GCAGC 2 cut(s) 85, 135
MaeII ACGT 2 cut(s) 113, 208
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MboII GAAGA 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 195
MnlI CCTC 2 cut(s) 22, 40
MroNI GCCGGC 1 cut(s) 76
MspI CCGG 3 cut(s) 68, 77, 177
MspR9I CCNGG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 82
NaeI GCCGGC 1 cut(s) 78
NciI CCSGG 1 cut(s) 68
NdeI CATATG 1 cut(s) 271
NdeII GATC 1 cut(s) 126
NgoMIV GCCGGC 1 cut(s) 76
PdiI GCCGGC 1 cut(s) 78
PfeI GAWTC 4 cut(s) 71, 173, 266, 278
PfoI TCCNGGA 1 cut(s) 66
PkrI GCNGC 2 cut(s) 100, 150
RsaI GTAC 2 cut(s) 10, 200
RsaNI GTAC 2 cut(s) 9, 199
SatI GCNGC 2 cut(s) 99, 149
Sau3AI GATC 1 cut(s) 126
ScaI AGTACT 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 68
SduI GDGCHC 1 cut(s) 195
SetI ASST 6 cut(s) 43, 51, 87, 116, 150, 211
StyD4I CCNGG 1 cut(s) 66
TaiI ACGT 2 cut(s) 116, 211
TaqI TCGA 2 cut(s) 45, 171
TatI WGTACW 1 cut(s) 198
TfiI GAWTC 4 cut(s) 71, 173, 266, 278
TseI GCWGC 2 cut(s) 98, 148
TspDTI ATGAA 2 cut(s) 29, 291
ZrmI AGTACT 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.