Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

19962934 .. 19964351

Gene Structure 1418 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G49240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGCAGCCATTAAATATGGCTGAGATATTGGATCACCGTGGAGTCTTGACCGACGGTGATGATGGTCCATTTAGAAATCTAACAAACTTCTATGATATGTTTTCAAGCAACTTTCCTGAAGGTTTGCGAGTGTTAGTCTTCGATGAAGATCCATCGTATCTTCTGATATTGGAGAGACATCTCCAAAAGTTTCAATACCAAGTGACTATATGCAACGAAGTGAACAAAGCTATGCATACACTCCGCAACCATAGGAATAGGTTCGACCTCGCTATGATACAAGTAAATAATGCAGAAGGTGATATATTCCGGTTTCTCTCGGAAATCGGATCGGAAATGGATCTTCCAATCATCATAATATCTGAAGACGATTCAGTGAAGTCGGTGAAGAAATGGATGATTAACGGTGCTGCCGACTATCTTATAAAACCGATAAGACCCGAAGATCTACGGATAGTATTCAAACATTTGGTAAAGAAGATGAGAGAAAGGAGGAGTGTGGTGACCGGAGAGGCAGAGAAAGCAGCAGGTGAGAAATCATCCTCTGTCGGAGATTCCACCATAAGAAACCCTAACAAGAGTAAAAGAAGTAGTTGCCTTGAAGCAGAAGTCAACGAGGAGGATCGTCATGATCATAATGATCGTGCTTGTGCTTCTAGTGCCAAGAAAAGACGAGTCGTTTGGGACGAGGAGCTTCACCAAAACTTTCTCAACGCCGTGGATTTTCTTGGACTCGAAAGAGCTGTTCCCAAAAAAATATTAGATGTTATGAAGGTTGATTACATCAGTCGAGAAAACGTAGCCAGTCATCTTCAGGTAACGTTTCTTATATACAACATAATTGTTCATTTTCAACAACATTTTTGCTTTTATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048518 GO:0048576 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048587 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000243 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

292

Amino Acids

33.82

Weight (kDa)

6.14

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	44 - 151	7.1e-12	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	425
AarI	CACCTGC	1 cut(s)	518
Acc36I	ACCTGC	1 cut(s)	518
AciI	CCGC	1 cut(s)	244
AclI	AACGTT	1 cut(s)	821
AclWI	GGATC	5 cut(s)	39, 143, 337, 348, 630
AcuI	CTGAAG	3 cut(s)	138, 384, 797
AgsI	TTSAA	5 cut(s)	105, 194, 463, 602, 854
AluBI	AGCT	3 cut(s)	230, 694, 743
AluI	AGCT	3 cut(s)	230, 694, 743
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	5 cut(s)	39, 143, 337, 348, 630
ApeKI	GCWGC	3 cut(s)	4, 410, 524
ArsI	GACNNNNNNTTYG	2 cut(s)	663, 695
Asp700I	GAANNNNTTC	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	65
AsuHPI	GGTGA	7 cut(s)	26, 68, 311, 397, 514, 542, 689
AvaII	GGWCC	1 cut(s)	65
BarI	GAAGNNNNNNTAC	2 cut(s)	764, 796
BbsI	GAAGAC	2 cut(s)	130, 372
BbvI	GCAGC	3 cut(s)	16, 397, 536
BccI	CCATC	2 cut(s)	56, 160
BceAI	ACGGC	1 cut(s)	701
BclI	TGATCA	1 cut(s)	631
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	1 cut(s)	657
BfuAI	ACCTGC	1 cut(s)	518
BglII	AGATCT	1 cut(s)	445
BisI	GCNGC	3 cut(s)	5, 411, 525
BlsI	GCNGC	3 cut(s)	6, 412, 526
Bme18I	GGWCC	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	65
BpiI	GAAGAC	2 cut(s)	130, 372
BsaBI	GATNNNNATC	1 cut(s)	147
BsaJI	CCNNGG	2 cut(s)	37, 717
BsaWI	WCCGGW	2 cut(s)	309, 506
Bse1I	ACTGG	1 cut(s)	804
Bse8I	GATNNNNATC	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	37, 717
BseGI	GGATG	2 cut(s)	402, 539
BseJI	GATNNNNATC	1 cut(s)	147
BseMII	CTCAG	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	804
BseRI	GAGGAG	3 cut(s)	508, 632, 704
BseXI	GCAGC	3 cut(s)	16, 397, 536
BsiSI	CCGG	2 cut(s)	310, 507
BslFI	GGGAC	1 cut(s)	698
BsmAI	GTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	698
Bsp143I	GATC	8 cut(s)	31, 148, 329, 340, 445, 622, 631, 640
BspACI	CCGC	1 cut(s)	244
BspCNI	CTCAG	1 cut(s)	13
BspHI	TCATGA	1 cut(s)	628
BspMI	ACCTGC	1 cut(s)	518
BspPI	GGATC	5 cut(s)	39, 143, 337, 348, 630
BsrI	ACTGG	1 cut(s)	804
BssECI	CCNNGG	2 cut(s)	37, 717
BssMI	GATC	8 cut(s)	31, 148, 329, 340, 445, 622, 631, 640
Bst4CI	ACNGT	3 cut(s)	38, 56, 407
BstDEI	CTNAG	1 cut(s)	21
BstDSI	CCRYGG	2 cut(s)	37, 717
BstEII	GGTNACC	1 cut(s)	502
BstF5I	GGATG	2 cut(s)	402, 539
BstKTI	GATC	8 cut(s)	34, 151, 332, 343, 448, 625, 634, 643
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	8 cut(s)	31, 148, 329, 340, 445, 622, 631, 640
BstMWI	GCNNNNNNNGC	2 cut(s)	521, 659
BstPI	GGTNACC	1 cut(s)	502
BstV1I	GCAGC	3 cut(s)	16, 397, 536
BstV2I	GAAGAC	2 cut(s)	130, 372
BstX2I	RGATCY	3 cut(s)	148, 340, 445
BstYI	RGATCY	3 cut(s)	148, 340, 445
BtgI	CCRYGG	2 cut(s)	37, 717
BtsCI	GGATG	2 cut(s)	402, 539
BtsIMutI	CAGTG	1 cut(s)	381
BveI	ACCTGC	1 cut(s)	518
CciI	TCATGA	1 cut(s)	628
Cfr13I	GGNCC	1 cut(s)	65
CviAII	CATG	1 cut(s)	629
CviJI	RGCY	6 cut(s)	7, 20, 230, 694, 743, 803
CviKI_1	RGCY	6 cut(s)	7, 20, 230, 694, 743, 803
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	8 cut(s)	33, 150, 331, 342, 447, 624, 633, 642
DpnII	GATC	8 cut(s)	31, 148, 329, 340, 445, 622, 631, 640
Eco47I	GGWCC	1 cut(s)	65
Eco57I	CTGAAG	3 cut(s)	138, 384, 797
Eco91I	GGTNACC	1 cut(s)	502
EcoO65I	GGTNACC	1 cut(s)	502
EcoT22I	ATGCAT	1 cut(s)	237
FaeI	CATG	1 cut(s)	632
FaqI	GGGAC	1 cut(s)	698
FatI	CATG	1 cut(s)	628
FbaI	TGATCA	1 cut(s)	631
Fnu4HI	GCNGC	3 cut(s)	5, 411, 525
FokI	GGATG	2 cut(s)	409, 526
Fsp4HI	GCNGC	3 cut(s)	5, 411, 525
FspBI	CTAG	1 cut(s)	657
GluI	GCNGC	3 cut(s)	5, 411, 525
HapII	CCGG	2 cut(s)	310, 507
Hin1II	CATG	1 cut(s)	632
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HinfI	GANTC	5 cut(s)	42, 371, 554, 675, 732
HpaII	CCGG	2 cut(s)	310, 507
HphI	GGTGA	7 cut(s)	26, 68, 311, 397, 514, 542, 689
Hpy166II	GTNNAC	2 cut(s)	223, 613
Hpy188I	TCNGA	6 cut(s)	165, 322, 329, 334, 364, 551
Hpy188III	TCNNGA	5 cut(s)	46, 116, 629, 791, 876
Hpy8I	GTNNAC	2 cut(s)	223, 613
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	3 cut(s)	113, 290, 766
HpyCH4III	ACNGT	3 cut(s)	38, 56, 407
HpyCH4IV	ACGT	2 cut(s)	798, 821
HpyCH4V	TGCA	4 cut(s)	4, 213, 235, 293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	521, 659
HpyF3I	CTNAG	1 cut(s)	21
HpySE526I	ACGT	2 cut(s)	798, 821
Hsp92II	CATG	1 cut(s)	632
Ksp22I	TGATCA	1 cut(s)	631
Kzo9I	GATC	8 cut(s)	31, 148, 329, 340, 445, 622, 631, 640
LmnI	GCTCC	1 cut(s)	691
LpnPI	CCDG	6 cut(s)	129, 323, 513, 520, 800, 817
Lsp1109I	GCAGC	3 cut(s)	16, 397, 536
MaeI	CTAG	1 cut(s)	657
MaeII	ACGT	2 cut(s)	798, 821
MaeIII	GTNAC	3 cut(s)	202, 502, 817
MalI	GATC	8 cut(s)	33, 150, 331, 342, 447, 624, 633, 642
MboI	GATC	8 cut(s)	31, 148, 329, 340, 445, 622, 631, 640
MboII	GAAGA	9 cut(s)	130, 152, 158, 335, 377, 400, 455, 490, 803
MflI	RGATCY	3 cut(s)	148, 340, 445
MluCI	AATT	1 cut(s)	840
MlyI	GAGTC	3 cut(s)	51, 684, 726
MmeI	TCCRAC	1 cut(s)	529
MnlI	CCTC	7 cut(s)	278, 486, 505, 553, 610, 613, 682
Mph1103I	ATGCAT	1 cut(s)	237
MroXI	GAANNNNTTC	1 cut(s)	260
MseI	TTAA	2 cut(s)	11, 402
MspI	CCGG	2 cut(s)	310, 507
MwoI	GCNNNNNNNGC	2 cut(s)	521, 659
NdeII	GATC	8 cut(s)	31, 148, 329, 340, 445, 622, 631, 640
NlaIII	CATG	1 cut(s)	632
NmuCI	GTSAC	2 cut(s)	202, 502
NsiI	ATGCAT	1 cut(s)	237
PagI	TCATGA	1 cut(s)	628
PaqCI	CACCTGC	1 cut(s)	518
PcsI	WCGNNNNNNNCGW	2 cut(s)	411, 684
PdmI	GAANNNNTTC	1 cut(s)	260
PfeI	GAWTC	2 cut(s)	371, 554
PkrI	GCNGC	3 cut(s)	6, 412, 526
PleI	GAGTC	3 cut(s)	50, 683, 726
PpsI	GAGTC	3 cut(s)	50, 683, 726
PsiI	TTATAA	1 cut(s)	425
Psp1406I	AACGTT	1 cut(s)	821
PspEI	GGTNACC	1 cut(s)	502
PspPI	GGNCC	1 cut(s)	65
PsuI	RGATCY	3 cut(s)	148, 340, 445
SaqAI	TTAA	2 cut(s)	11, 402
SatI	GCNGC	3 cut(s)	5, 411, 525
Sau3AI	GATC	8 cut(s)	31, 148, 329, 340, 445, 622, 631, 640
Sau96I	GGNCC	1 cut(s)	65
SchI	GAGTC	3 cut(s)	51, 684, 726
SinI	GGWCC	1 cut(s)	65
Sse9I	AATT	1 cut(s)	840
SsiI	CCGC	1 cut(s)	244
SspI	AATATT	1 cut(s)	759
SspMI	CTAG	1 cut(s)	657
TaaI	ACNGT	3 cut(s)	38, 56, 407
TaiI	ACGT	2 cut(s)	801, 824
TaqI	TCGA	4 cut(s)	141, 264, 735, 790
TaqII	GACCGA	1 cut(s)	65
TasI	AATT	1 cut(s)	840
TfiI	GAWTC	2 cut(s)	371, 554
Tru1I	TTAA	2 cut(s)	11, 402
Tru9I	TTAA	2 cut(s)	11, 402
TscAI	CASTG	1 cut(s)	381
TseFI	GTSAC	2 cut(s)	202, 502
TseI	GCWGC	3 cut(s)	4, 410, 524
Tsp45I	GTSAC	2 cut(s)	202, 502
TspDTI	ATGAA	3 cut(s)	159, 785, 836
TspGWI	ACGGA	1 cut(s)	466
TspRI	CASTG	1 cut(s)	381
VpaK11BI	GGWCC	1 cut(s)	65
XmnI	GAANNNNTTC	1 cut(s)	260
XspI	CTAG	1 cut(s)	657
Zsp2I	ATGCAT	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.