AT5G49260
MYB Family

two-component response regulator

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
N/A
Physical Location & Seq
Forward (+)
19966799 .. 19967527
729 bp
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UTR
Exon/CDS
Intron
AT5G49260.1

Sequence Viewer

Length: 633 bp
ATGCTGAAGAAGGAGAATGATGAAAAGATTAAGAAAGAGGAGATGAACAAATCTTTAATAACCCCACAAAATGGAAGAATGTATGTTGGAGAAGATCCATCAAATTTCTACAGAGGAAGAAATGATCATTTCCCAACACATCATGTCAACAATATTCCTCAACCTTCTTATGTGCCGCAACACACCTTGAACCCTAACAATCTCAACACACAGCTCATACCATCTCTCGGACATCATTTTGATCATCGAGGCTCTATTGTGGTTCCCGATACAAACCTAGAGATGAATCAACAATTTTTTCACCACCAACAGACCTCGGACTTCACGCCAGAAGAGAATCTTGGTGATAACAACTTTACTGAGGAAGATTTAATGATGGCATCAACATATTATTTGAGCGAGCCGGATGATGCTTCTTTTGAAAAGAAGAATGGGCATGAAGTTGTGCCATCGCCCATATTTCATTCGCCGTTTTCCTCTAATAAGTACCAACGTAGTTCCTTTCTTGATCAGCAAGAAAGTGGAGGACTTAGCTACAATACTGTTTTTTCTAATGATGAATCCAACATTGGGATTTGCAAGAAGGGATCAAGATGGGTCAAGATCGGAGCCAAGCATGAAGACGGAAGATGA

Protein Analysis

210

Amino Acids

24.11

Weight (kDa)

5.7

Isoelectric Point (pI)

46.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 71
AciI CCGC 1 cut(s) 176
AclWI GGATC 2 cut(s) 89, 595
AcsI RAATTY 1 cut(s) 103
AcuI CTGAAG 1 cut(s) 26
AfaI GTAC 1 cut(s) 488
AfiI CCNNNNNNNGG 3 cut(s) 71, 227, 570
AgsI TTSAA 2 cut(s) 190, 422
AjuI GAANNNNNNNTTGG 4 cut(s) 324, 356, 552, 584
AluBI AGCT 2 cut(s) 214, 534
AluI AGCT 2 cut(s) 214, 534
AlwI GGATC 2 cut(s) 89, 595
ApoI RAATTY 1 cut(s) 103
AsuHPI GGTGA 2 cut(s) 293, 356
BbsI GAAGAC 1 cut(s) 627
BccI CCATC 5 cut(s) 106, 229, 370, 457, 588
BceAI ACGGC 1 cut(s) 454
BclI TGATCA 3 cut(s) 124, 241, 508
BfaI CTAG 1 cut(s) 278
BfmI CTRYAG 1 cut(s) 109
BisI GCNGC 1 cut(s) 176
BlsI GCNGC 1 cut(s) 177
BmiI GGNNCC 2 cut(s) 264, 610
BmsI GCATC 2 cut(s) 389, 400
BpiI GAAGAC 1 cut(s) 627
BsaJI CCNNGG 1 cut(s) 315
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 227, 570
BseDI CCNNGG 1 cut(s) 315
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 3 cut(s) 71, 227, 570
BseMII CTCAG 1 cut(s) 351
BseRI GAGGAG 1 cut(s) 53
BsiSI CCGG 1 cut(s) 404
BslI CCNNNNNNNGG 3 cut(s) 71, 227, 570
Bsp143I GATC 6 cut(s) 94, 124, 241, 508, 587, 603
BspACI CCGC 1 cut(s) 176
BspCNI CTCAG 1 cut(s) 352
BspLI GGNNCC 2 cut(s) 264, 610
BspPI GGATC 2 cut(s) 89, 595
BssECI CCNNGG 1 cut(s) 315
BssMI GATC 6 cut(s) 94, 124, 241, 508, 587, 603
Bst4CI ACNGT 1 cut(s) 544
Bst6I CTCTTC 1 cut(s) 327
BstC8I GCNNGC 1 cut(s) 401
BstDEI CTNAG 2 cut(s) 360, 530
BstF5I GGATG 1 cut(s) 412
BstKTI GATC 6 cut(s) 97, 127, 244, 511, 590, 606
BstMBI GATC 6 cut(s) 94, 124, 241, 508, 587, 603
BstSFI CTRYAG 1 cut(s) 109
BstV2I GAAGAC 1 cut(s) 627
BstX2I RGATCY 1 cut(s) 94
BstYI RGATCY 1 cut(s) 94
BtgZI GCGATG 1 cut(s) 435
BtsCI GGATG 1 cut(s) 412
Cac8I GCNNGC 1 cut(s) 401
Csp6I GTAC 1 cut(s) 487
CviAII CATG 3 cut(s) 143, 437, 617
CviJI RGCY 5 cut(s) 214, 252, 403, 534, 611
CviKI_1 RGCY 5 cut(s) 214, 252, 403, 534, 611
CviQI GTAC 1 cut(s) 487
DdeI CTNAG 2 cut(s) 360, 530
DpnI GATC 6 cut(s) 96, 126, 243, 510, 589, 605
DpnII GATC 6 cut(s) 94, 124, 241, 508, 587, 603
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
Eco57I CTGAAG 1 cut(s) 26
FaeI CATG 3 cut(s) 146, 440, 620
FaiI YATR 8 cut(s) 84, 144, 171, 218, 388, 438, 458, 618
FalI AAGNNNNNCTT 2 cut(s) 324, 356
FatI CATG 3 cut(s) 142, 436, 616
FbaI TGATCA 3 cut(s) 124, 241, 508
Fnu4HI GCNGC 1 cut(s) 176
FokI GGATG 1 cut(s) 419
Fsp4HI GCNGC 1 cut(s) 176
FspBI CTAG 1 cut(s) 278
GluI GCNGC 1 cut(s) 176
HapII CCGG 1 cut(s) 404
Hin1II CATG 3 cut(s) 146, 440, 620
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 3 cut(s) 286, 337, 560
HpaII CCGG 1 cut(s) 404
HphI GGTGA 2 cut(s) 293, 356
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 3 cut(s) 230, 319, 608
Hpy188III TCNNGA 4 cut(s) 266, 506, 591, 601
Hpy8I GTNNAC 1 cut(s) 148
HpyAV CCTTC 3 cut(s) 4, 174, 577
HpyCH4III ACNGT 1 cut(s) 544
HpyCH4IV ACGT 1 cut(s) 493
HpyCH4V TGCA 1 cut(s) 579
HpyF3I CTNAG 2 cut(s) 360, 530
HpySE526I ACGT 1 cut(s) 493
Hsp92II CATG 3 cut(s) 146, 440, 620
Ksp22I TGATCA 3 cut(s) 124, 241, 508
Kzo9I GATC 6 cut(s) 94, 124, 241, 508, 587, 603
LmnI GCTCC 1 cut(s) 608
LpnPI CCDG 2 cut(s) 342, 417
LweI GCATC 2 cut(s) 389, 400
MaeI CTAG 1 cut(s) 278
MaeII ACGT 1 cut(s) 493
MalI GATC 6 cut(s) 96, 126, 243, 510, 589, 605
MboI GATC 6 cut(s) 94, 124, 241, 508, 587, 603
MboII GAAGA 8 cut(s) 19, 87, 104, 129, 344, 377, 439, 632
MflI RGATCY 1 cut(s) 94
MluCI AATT 2 cut(s) 103, 293
MmeI TCCRAC 2 cut(s) 67, 588
MnlI CCTC 8 cut(s) 31, 107, 168, 242, 325, 355, 487, 518
MseI TTAA 3 cut(s) 30, 56, 371
MspI CCGG 1 cut(s) 404
NdeII GATC 6 cut(s) 94, 124, 241, 508, 587, 603
NlaIII CATG 3 cut(s) 146, 440, 620
NlaIV GGNNCC 2 cut(s) 264, 610
PfeI GAWTC 3 cut(s) 286, 337, 560
PflMI CCANNNNNTGG 1 cut(s) 71
PkrI GCNGC 1 cut(s) 177
PspN4I GGNNCC 2 cut(s) 264, 610
PsuI RGATCY 1 cut(s) 94
RsaI GTAC 1 cut(s) 488
RsaNI GTAC 1 cut(s) 487
SaqAI TTAA 3 cut(s) 30, 56, 371
SatI GCNGC 1 cut(s) 176
Sau3AI GATC 6 cut(s) 94, 124, 241, 508, 587, 603
SetI ASST 7 cut(s) 166, 188, 216, 279, 317, 496, 536
SfaNI GCATC 2 cut(s) 389, 400
SfcI CTRYAG 1 cut(s) 109
Sse9I AATT 2 cut(s) 103, 293
SsiI CCGC 1 cut(s) 176
SspI AATATT 1 cut(s) 154
SspMI CTAG 1 cut(s) 278
TaaI ACNGT 1 cut(s) 544
TaiI ACGT 1 cut(s) 496
TaqI TCGA 1 cut(s) 247
TasI AATT 2 cut(s) 103, 293
TauI GCSGC 1 cut(s) 178
TfiI GAWTC 3 cut(s) 286, 337, 560
Tru1I TTAA 3 cut(s) 30, 56, 371
Tru9I TTAA 3 cut(s) 30, 56, 371
TspDTI ATGAA 7 cut(s) 36, 59, 299, 452, 453, 573, 633
Van91I CCANNNNNTGG 1 cut(s) 71
XapI RAATTY 1 cut(s) 103
XspI CTAG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.