AT5G49450
BZIP Family

basic region leucin zipper

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
N/A
Physical Location & Seq
Forward (+)
20051829 .. 20052735
907 bp
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UTR
Exon/CDS
Intron
AT5G49450.1

Sequence Viewer

Length: 438 bp
ATGGCAAACGCAGAGAAGACAAGTTCAGGTTCCGACATAGATGAGAAGAAAAGAAAACGCAAGTTATCAAACCGCGAATCTGCAAGGAGGTCGCGTTTGAAGAAACAGAAGTTAATGGAAGACACGATTCATGAGATCTCCAGTCTTGAACGACGAATCAAAGAGAACAGTGAGAGATGTCGAGCTGTAAAACAGAGGCTTGACTCGGTCGAAACGGAGAACGCGGGTCTTAGATCGGAGAAGATTTGGCTCTCGAGTTACGTTAGCGATTTAGAGAATATGATTGCTACGACGAGTTTAACGCTGACGCAGAGTGGTGGTGGCGATTGTGTCGACGATCAGAACGCAAACGCGGGAATAGCGGTTGGAGATTGTAGACGTACACCGTGGAAATTGAGTTGTGGTTCTCTACAACCAATGGCGTCCTTTAAGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

145

Amino Acids

16.22

Weight (kDa)

9.3

Isoelectric Point (pI)

55.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 14 - 53 2e-06 Basic region leucine zipper
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 333, 376
AccII CGCG 4 cut(s) 75, 94, 224, 353
AciI CCGC 4 cut(s) 73, 224, 353, 362
AcyI GRCGYC 1 cut(s) 422
AfaI GTAC 1 cut(s) 382
AgsI TTSAA 2 cut(s) 100, 149
AluBI AGCT 1 cut(s) 185
AluI AGCT 1 cut(s) 185
Ama87I CYCGRG 1 cut(s) 253
AvaI CYCGRG 1 cut(s) 253
BbsI GAAGAC 2 cut(s) 23, 126
BcgI CGANNNNNNTGC 2 cut(s) 72, 106
BglII AGATCT 1 cut(s) 135
BmeT110I CYCGRG 1 cut(s) 253
BmiI GGNNCC 1 cut(s) 31
BpiI GAAGAC 2 cut(s) 23, 126
BpmI CTGGAG 1 cut(s) 124
BsaHI GRCGYC 1 cut(s) 422
BsaJI CCNNGG 1 cut(s) 386
BsaXI ACNNNNNCTCC 2 cut(s) 79, 109
Bse1I ACTGG 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 386
BseNI ACTGG 1 cut(s) 141
Bsh1236I CGCG 4 cut(s) 75, 94, 224, 353
Bsh1285I CGRYCG 1 cut(s) 210
BsiEI CGRYCG 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 253
BsoBI CYCGRG 1 cut(s) 253
Bsp143I GATC 3 cut(s) 135, 233, 337
BspACI CCGC 4 cut(s) 73, 224, 353, 362
BspFNI CGCG 4 cut(s) 75, 94, 224, 353
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 1 cut(s) 31
BsrI ACTGG 1 cut(s) 141
BssECI CCNNGG 1 cut(s) 386
BssMI GATC 3 cut(s) 135, 233, 337
BssNI GRCGYC 1 cut(s) 422
Bst4CI ACNGT 2 cut(s) 170, 387
BstACI GRCGYC 1 cut(s) 422
BstDEI CTNAG 1 cut(s) 230
BstDSI CCRYGG 1 cut(s) 386
BstFNI CGCG 4 cut(s) 75, 94, 224, 353
BstKTI GATC 3 cut(s) 138, 236, 340
BstMBI GATC 3 cut(s) 135, 233, 337
BstMCI CGRYCG 1 cut(s) 210
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstUI CGCG 4 cut(s) 75, 94, 224, 353
BstV2I GAAGAC 2 cut(s) 23, 126
BstX2I RGATCY 1 cut(s) 135
BstYI RGATCY 1 cut(s) 135
BtgI CCRYGG 1 cut(s) 386
BtsIMutI CAGTG 1 cut(s) 175
CciI TCATGA 1 cut(s) 130
CseI GACGC 2 cut(s) 316, 411
Csp6I GTAC 1 cut(s) 381
CviAII CATG 2 cut(s) 131, 435
CviJI RGCY 3 cut(s) 185, 199, 250
CviKI_1 RGCY 3 cut(s) 185, 199, 250
CviQI GTAC 1 cut(s) 381
DdeI CTNAG 1 cut(s) 230
DpnI GATC 3 cut(s) 137, 235, 339
DpnII GATC 3 cut(s) 135, 233, 337
Eco88I CYCGRG 1 cut(s) 253
FaeI CATG 2 cut(s) 134, 438
FaiI YATR 4 cut(s) 38, 132, 281, 436
FatI CATG 2 cut(s) 130, 434
FauI CCCGC 2 cut(s) 217, 346
FblI GTMKAC 2 cut(s) 333, 376
GsuI CTGGAG 1 cut(s) 124
HgaI GACGC 2 cut(s) 316, 411
Hin1I GRCGYC 1 cut(s) 422
Hin1II CATG 2 cut(s) 134, 438
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HinfI GANTC 4 cut(s) 77, 127, 156, 203
Hpy166II GTNNAC 3 cut(s) 334, 377, 383
Hpy188I TCNGA 3 cut(s) 34, 238, 342
Hpy188III TCNNGA 3 cut(s) 131, 146, 253
Hpy8I GTNNAC 3 cut(s) 334, 377, 383
Hpy99I CGWCG 3 cut(s) 156, 295, 338
HpyCH4III ACNGT 2 cut(s) 170, 387
HpyCH4IV ACGT 2 cut(s) 261, 379
HpyCH4V TGCA 1 cut(s) 83
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
HpyF3I CTNAG 1 cut(s) 230
HpySE526I ACGT 2 cut(s) 261, 379
Hsp92I GRCGYC 1 cut(s) 422
Hsp92II CATG 2 cut(s) 134, 438
Kzo9I GATC 3 cut(s) 135, 233, 337
LpnPI CCDG 2 cut(s) 12, 154
MaeII ACGT 2 cut(s) 261, 379
MaeIII GTNAC 1 cut(s) 257
MalI GATC 3 cut(s) 137, 235, 339
MboI GATC 3 cut(s) 135, 233, 337
MboII GAAGA 5 cut(s) 28, 58, 112, 131, 253
MflI RGATCY 1 cut(s) 135
MluCI AATT 1 cut(s) 392
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 2 cut(s) 57, 346
MnlI CCTC 2 cut(s) 81, 189
MseI TTAA 3 cut(s) 113, 299, 429
MvnI CGCG 4 cut(s) 75, 94, 224, 353
MwoI GCNNNNNNNGC 1 cut(s) 359
NdeII GATC 3 cut(s) 135, 233, 337
NlaIII CATG 2 cut(s) 134, 438
NlaIV GGNNCC 1 cut(s) 31
PaeR7I CTCGAG 1 cut(s) 253
PagI TCATGA 1 cut(s) 130
PfeI GAWTC 3 cut(s) 77, 127, 156
PflFI GACNNNGTC 1 cut(s) 206
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 31
PsuI RGATCY 1 cut(s) 135
PsyI GACNNNGTC 1 cut(s) 206
RsaI GTAC 1 cut(s) 382
RsaNI GTAC 1 cut(s) 381
SalI GTCGAC 1 cut(s) 332
SaqAI TTAA 3 cut(s) 113, 299, 429
Sau3AI GATC 3 cut(s) 135, 233, 337
SchI GAGTC 1 cut(s) 197
SetI ASST 5 cut(s) 31, 92, 187, 264, 382
Sfr274I CTCGAG 1 cut(s) 253
SlaI CTCGAG 1 cut(s) 253
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
Sse9I AATT 1 cut(s) 392
SsiI CCGC 4 cut(s) 73, 224, 353, 362
TaaI ACNGT 2 cut(s) 170, 387
TaiI ACGT 2 cut(s) 264, 382
TaqI TCGA 4 cut(s) 181, 210, 254, 333
TaqII GACCGA 1 cut(s) 196
TasI AATT 1 cut(s) 392
TfiI GAWTC 3 cut(s) 77, 127, 156
Tru1I TTAA 3 cut(s) 113, 299, 429
Tru9I TTAA 3 cut(s) 113, 299, 429
TscAI CASTG 1 cut(s) 175
TspDTI ATGAA 1 cut(s) 119
TspGWI ACGGA 1 cut(s) 230
TspRI CASTG 1 cut(s) 175
Tth111I GACNNNGTC 1 cut(s) 206
XhoI CTCGAG 1 cut(s) 253
XmiI GTMKAC 2 cut(s) 333, 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.