Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

20090648 .. 20093346

Gene Structure 2699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G49520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGAGAAGAAAAAAGAAGAGGATCATCATCATCAACAACAACAACAACAACAAAAGGAGATCAAGAACACAGAGACAAAGATCGAGCAAGAACAAGAACAAGAACAAAAACAAGAAATCTCTCAAGCATCATCATCATCAAACATGGCGAATCTAGTTACGTCATCAGATCATCATCCGTTGGAGCTAGCTGGAAATCTCTCAAGCATCTTCGATACTTCATCTTTACCTTTTCCTTATTCTTATTTCGAAGATCACTCTTCTAATAATCCTAATTCTTTCCTAGACTTGCTCCGACAAGATCATCAGTTTGCTTCTTCCTCTAATTCCTCTTCTTTTTCATTCGATGCCTTTCCTCTCCCCAATAACAACAACAACACCTCTTTTTTTACGGATTTGCCCTTACCTCAAGCTGAGTCATCAGAAGTCGTGAACACAACACCGACTTCTCCAAACTCAACCTCAGTCTCATCTTCCTCCAACGAAGCTGCAAATGATAACAACAGTGGTAAAGAAGTTACTGTTAAAGATCAAGAAGAAGGAGATCAACAACAAGAGCAAAAGGGTACTAAGCCACAGTTGAAGGCAAAGAAGAAGAATCAAAAGAAAGCTAGAGAAGCTAGGTTTGCGTTTCTGACGAAGAGCGATATTGATAATCTTGACGACGGTTATAGGTGGAGAAAATACGGCCAAAAAGCTGTCAAAAACAGTCCTTATCCCAGAAGCTATTACCGTTGCACCACAGTGGGTTGCGGAGTGAAGAAGAGAGTGGAGAGATCCTCCGATGATCCTTCGATCGTCATGACAACCTACGAAGGTCAGCATACCCATCCTTTCCCCATGACGCCACGTGGACACATCGGAATGCTCACGTCACCAATCCTAGACCACGGTGCAACCACCGCGTCATCATCATCATTCTCCATCCCTCAGCCACGTTACTTGCTGACTCAACATCACCAGCCCTACAACATGTACAACAACAACTCTCTAAGTATGATCAATAGAAGATCATCCGATGGCACTTTCGTAAATCCAGGTCCATCATCATCATTCCCCGGCTTTGGTTATGATATGTCTCAAGCTTCTACTTCAACTTCTTCTTCCATTAGAGATCATGGATTGCTTCAAGATATTCTTCCTTCGCAGATCAGATCCGATACTATTAACACTCAAACCAATGAAGAGAATAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

399

Amino Acids

44.73

Weight (kDa)

6.06

Isoelectric Point (pI)

60.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	221 - 278	6.4e-28	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	905
AciI	CCGC	2 cut(s)	753, 903
AclWI	GGATC	4 cut(s)	30, 771, 782, 1149
AcoI	YGGCCR	1 cut(s)	688
AcvI	CACGTG	1 cut(s)	851
AcyI	GRCGYC	1 cut(s)	845
AfaI	GTAC	2 cut(s)	568, 977
AfiI	CCNNNNNNNGG	1 cut(s)	1064
AflIII	ACRYGT	1 cut(s)	972
AgsI	TTSAA	3 cut(s)	583, 1095, 1130
AjiI	CACGTC	1 cut(s)	873
AjnI	CCWGG	1 cut(s)	1036
AleI	CACNNNNGTG	1 cut(s)	743
AluBI	AGCT	9 cut(s)	187, 191, 413, 488, 611, 620, 698, 726, 1085
AluI	AGCT	9 cut(s)	187, 191, 413, 488, 611, 620, 698, 726, 1085
Alw26I	GTCTC	3 cut(s)	68, 472, 1083
AlwI	GGATC	4 cut(s)	30, 771, 782, 1149
AoxI	GGCC	1 cut(s)	688
ApeKI	GCWGC	1 cut(s)	488
AspS9I	GGNCC	1 cut(s)	1040
AsuC2I	CCSGG	1 cut(s)	1059
AsuHPI	GGTGA	2 cut(s)	867, 950
AsuII	TTCGAA	1 cut(s)	249
AsuNHI	GCTAGC	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	1040
BbrPI	CACGTG	1 cut(s)	851
BbvCI	CCTCAGC	1 cut(s)	930
BbvI	GCAGC	1 cut(s)	475
BccI	CCATC	4 cut(s)	837, 932, 1013, 1051
BceAI	ACGGC	1 cut(s)	703
BciT130I	CCWGG	1 cut(s)	1038
BclI	TGATCA	1 cut(s)	999
BcnI	CCSGG	1 cut(s)	1059
BcoDI	GTCTC	3 cut(s)	68, 472, 1083
BfaI	CTAG	6 cut(s)	155, 188, 284, 612, 621, 884
BisI	GCNGC	1 cut(s)	489
BlsI	GCNGC	1 cut(s)	490
Bme1390I	CCNGG	2 cut(s)	1038, 1059
Bme18I	GGWCC	1 cut(s)	1040
BmgBI	CACGTC	1 cut(s)	873
BmgT120I	GGNCC	1 cut(s)	1040
BmrFI	CCNGG	2 cut(s)	1038, 1059
BmsI	GCATC	3 cut(s)	137, 216, 337
BmtI	GCTAGC	1 cut(s)	191
BplI	GAGNNNNNCTC	2 cut(s)	764, 796
Bpu10I	CCTNAGC	1 cut(s)	930
Bpu14I	TTCGAA	1 cut(s)	249
BpuEI	CTTGAG	4 cut(s)	108, 187, 393, 1065
BpuMI	CCSGG	1 cut(s)	1059
BsaAI	YACGTR	1 cut(s)	851
BsaBI	GATNNNNATC	2 cut(s)	27, 174
BsaHI	GRCGYC	1 cut(s)	845
BsaJI	CCNNGG	2 cut(s)	889, 1057
Bsc4I	CCNNNNNNNGG	1 cut(s)	1064
Bse8I	GATNNNNATC	2 cut(s)	27, 174
BseBI	CCWGG	1 cut(s)	1038
BseDI	CCNNGG	2 cut(s)	889, 1057
BseGI	GGATG	4 cut(s)	175, 829, 924, 1013
BseJI	GATNNNNATC	2 cut(s)	27, 174
BseLI	CCNNNNNNNGG	1 cut(s)	1064
BseMII	CTCAG	3 cut(s)	405, 477, 944
BseXI	GCAGC	1 cut(s)	475
Bsh1236I	CGCG	1 cut(s)	905
Bsh1285I	CGRYCG	1 cut(s)	798
BshFI	GGCC	1 cut(s)	690
BsiEI	CGRYCG	1 cut(s)	798
BsiSI	CCGG	1 cut(s)	1059
BslI	CCNNNNNNNGG	1 cut(s)	1064
BsmAI	GTCTC	3 cut(s)	68, 472, 1083
BsmI	GAATGC	1 cut(s)	870
BsnI	GGCC	1 cut(s)	690
Bsp119I	TTCGAA	1 cut(s)	249
Bsp1407I	TGTACA	1 cut(s)	975
BspACI	CCGC	2 cut(s)	753, 903
BspANI	GGCC	1 cut(s)	690
BspCNI	CTCAG	3 cut(s)	406, 476, 943
BspFNI	CGCG	1 cut(s)	905
BspHI	TCATGA	1 cut(s)	801
BspOI	GCTAGC	1 cut(s)	191
BspPI	GGATC	4 cut(s)	30, 771, 782, 1149
BspQI	GCTCTTC	1 cut(s)	635
BspT104I	TTCGAA	1 cut(s)	249
BsrGI	TGTACA	1 cut(s)	975
BssECI	CCNNGG	2 cut(s)	889, 1057
BssNI	GRCGYC	1 cut(s)	845
Bst2UI	CCWGG	1 cut(s)	1038
Bst4CI	ACNGT	8 cut(s)	506, 523, 579, 668, 710, 734, 745, 893
Bst6I	CTCTTC	6 cut(s)	12, 265, 337, 635, 758, 1179
BstACI	GRCGYC	1 cut(s)	845
BstAUI	TGTACA	1 cut(s)	975
BstBAI	YACGTR	1 cut(s)	851
BstBI	TTCGAA	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	5 cut(s)	414, 463, 570, 930, 992
BstDSI	CCRYGG	1 cut(s)	889
BstF5I	GGATG	4 cut(s)	175, 829, 924, 1013
BstFNI	CGCG	1 cut(s)	905
BstMAI	GTCTC	3 cut(s)	68, 472, 1083
BstMCI	CGRYCG	1 cut(s)	798
BstMWI	GCNNNNNNNGC	3 cut(s)	617, 626, 902
BstNI	CCWGG	1 cut(s)	1038
BstNSI	RCATGY	1 cut(s)	976
BstSCI	CCNGG	2 cut(s)	1036, 1057
BstUI	CGCG	1 cut(s)	905
BstV1I	GCAGC	1 cut(s)	475
BstX2I	RGATCY	2 cut(s)	776, 1154
BstYI	RGATCY	2 cut(s)	776, 1154
BsuRI	GGCC	1 cut(s)	690
BtgI	CCRYGG	1 cut(s)	889
BtrI	CACGTC	1 cut(s)	873
BtsCI	GGATG	4 cut(s)	175, 829, 924, 1013
BtsIMutI	CAGTG	2 cut(s)	511, 750
Cac8I	GCNNGC	1 cut(s)	189
CciI	TCATGA	1 cut(s)	801
Cfr13I	GGNCC	1 cut(s)	1040
CseI	GACGC	2 cut(s)	853, 894
Csp6I	GTAC	2 cut(s)	567, 976
CspCI	CAANNNNNGTGG	2 cut(s)	924, 959
CviAII	CATG	5 cut(s)	145, 802, 841, 973, 1118
CviQI	GTAC	2 cut(s)	567, 976
DdeI	CTNAG	5 cut(s)	414, 463, 570, 930, 992
EaeI	YGGCCR	1 cut(s)	688
Eam1104I	CTCTTC	6 cut(s)	12, 265, 337, 635, 758, 1179
EarI	CTCTTC	6 cut(s)	12, 265, 337, 635, 758, 1179
Eco47I	GGWCC	1 cut(s)	1040
Eco72I	CACGTG	1 cut(s)	851
EcoRII	CCWGG	1 cut(s)	1036
FaeI	CATG	5 cut(s)	148, 805, 844, 976, 1121
FalI	AAGNNNNNCTT	2 cut(s)	1122, 1154
FatI	CATG	5 cut(s)	144, 801, 840, 972, 1117
FbaI	TGATCA	1 cut(s)	999
Fnu4HI	GCNGC	1 cut(s)	489
FokI	GGATG	4 cut(s)	162, 816, 911, 1000
Fsp4HI	GCNGC	1 cut(s)	489
FspBI	CTAG	6 cut(s)	155, 188, 284, 612, 621, 884
GluI	GCNGC	1 cut(s)	489
HaeIII	GGCC	1 cut(s)	690
HapII	CCGG	1 cut(s)	1059
HgaI	GACGC	2 cut(s)	853, 894
Hin1I	GRCGYC	1 cut(s)	845
Hin1II	CATG	5 cut(s)	148, 805, 844, 976, 1121
HindIII	AAGCTT	1 cut(s)	1083
HinfI	GANTC	4 cut(s)	151, 416, 598, 949
HpaII	CCGG	1 cut(s)	1059
HphI	GGTGA	2 cut(s)	867, 950
Hpy166II	GTNNAC	2 cut(s)	433, 854
Hpy188I	TCNGA	9 cut(s)	169, 296, 424, 636, 784, 863, 1018, 1154, 1159
Hpy188III	TCNNGA	6 cut(s)	64, 430, 533, 659, 802, 1130
Hpy8I	GTNNAC	2 cut(s)	433, 854
Hpy99I	CGWCG	1 cut(s)	668
HpyAV	CCTTC	5 cut(s)	533, 577, 801, 809, 1152
HpyCH4III	ACNGT	8 cut(s)	506, 523, 579, 668, 710, 734, 745, 893
HpyCH4IV	ACGT	4 cut(s)	161, 850, 872, 937
HpyCH4V	TGCA	3 cut(s)	491, 738, 896
HpyF10VI	GCNNNNNNNGC	3 cut(s)	617, 626, 902
HpyF3I	CTNAG	5 cut(s)	414, 463, 570, 930, 992
HpySE526I	ACGT	4 cut(s)	161, 850, 872, 937
Hsp92I	GRCGYC	1 cut(s)	845
Hsp92II	CATG	5 cut(s)	148, 805, 844, 976, 1121
Ksp22I	TGATCA	1 cut(s)	999
LguI	GCTCTTC	1 cut(s)	635
LmnI	GCTCC	2 cut(s)	184, 297
LpnPI	CCDG	6 cut(s)	177, 733, 974, 1023, 1050, 1072
Lsp1109I	GCAGC	1 cut(s)	475
LweI	GCATC	3 cut(s)	137, 216, 337
MaeI	CTAG	6 cut(s)	155, 188, 284, 612, 621, 884
MaeII	ACGT	4 cut(s)	161, 850, 872, 937
MaeIII	GTNAC	4 cut(s)	157, 517, 873, 938
MflI	RGATCY	2 cut(s)	776, 1154
MluCI	AATT	2 cut(s)	274, 325
MlyI	GAGTC	2 cut(s)	425, 943
MmeI	TCCRAC	3 cut(s)	162, 319, 504
MseI	TTAA	2 cut(s)	525, 1167
MslI	CAYNNNNRTG	2 cut(s)	743, 863
MspI	CCGG	1 cut(s)	1059
MspR9I	CCNGG	2 cut(s)	1038, 1059
Mva1269I	GAATGC	1 cut(s)	870
MvaI	CCWGG	1 cut(s)	1038
MvnI	CGCG	1 cut(s)	905
MwoI	GCNNNNNNNGC	3 cut(s)	617, 626, 902
NciI	CCSGG	1 cut(s)	1059
NheI	GCTAGC	1 cut(s)	187
NlaIII	CATG	5 cut(s)	148, 805, 844, 976, 1121
NmuCI	GTSAC	1 cut(s)	873
NspI	RCATGY	1 cut(s)	976
NspV	TTCGAA	1 cut(s)	249
OliI	CACNNNNGTG	1 cut(s)	743
PagI	TCATGA	1 cut(s)	801
PciI	ACATGT	1 cut(s)	972
PciSI	GCTCTTC	1 cut(s)	635
PctI	GAATGC	1 cut(s)	870
PfeI	GAWTC	2 cut(s)	151, 598
PkrI	GCNGC	1 cut(s)	490
Ple19I	CGATCG	1 cut(s)	798
PleI	GAGTC	2 cut(s)	424, 943
PmaCI	CACGTG	1 cut(s)	851
PmlI	CACGTG	1 cut(s)	851
PpsI	GAGTC	2 cut(s)	424, 943
Ppu21I	YACGTR	1 cut(s)	851
PscI	ACATGT	1 cut(s)	972
Psp6I	CCWGG	1 cut(s)	1036
PspCI	CACGTG	1 cut(s)	851
PspGI	CCWGG	1 cut(s)	1036
PspPI	GGNCC	1 cut(s)	1040
PsuI	RGATCY	2 cut(s)	776, 1154
PvuI	CGATCG	1 cut(s)	798
RsaI	GTAC	2 cut(s)	568, 977
RsaNI	GTAC	2 cut(s)	567, 976
RseI	CAYNNNNRTG	2 cut(s)	743, 863
SapI	GCTCTTC	1 cut(s)	635
SaqAI	TTAA	2 cut(s)	525, 1167
SatI	GCNGC	1 cut(s)	489
Sau96I	GGNCC	1 cut(s)	1040
SchI	GAGTC	2 cut(s)	425, 943
ScrFI	CCNGG	2 cut(s)	1038, 1059
SfaNI	GCATC	3 cut(s)	137, 216, 337
SfuI	TTCGAA	1 cut(s)	249
SinI	GGWCC	1 cut(s)	1040
SmiMI	CAYNNNNRTG	2 cut(s)	743, 863
SmlI	CTYRAG	4 cut(s)	123, 202, 408, 1080
SmoI	CTYRAG	4 cut(s)	123, 202, 408, 1080
Sse9I	AATT	2 cut(s)	274, 325
SsiI	CCGC	2 cut(s)	753, 903
SspMI	CTAG	6 cut(s)	155, 188, 284, 612, 621, 884
StyD4I	CCNGG	2 cut(s)	1036, 1057
TaaI	ACNGT	8 cut(s)	506, 523, 579, 668, 710, 734, 745, 893
TaiI	ACGT	4 cut(s)	164, 853, 875, 940
TaqI	TCGA	5 cut(s)	84, 213, 249, 345, 794
TasI	AATT	2 cut(s)	274, 325
TatI	WGTACW	1 cut(s)	975
TfiI	GAWTC	2 cut(s)	151, 598
Tru1I	TTAA	2 cut(s)	525, 1167
Tru9I	TTAA	2 cut(s)	525, 1167
TscAI	CASTG	2 cut(s)	511, 750
TseFI	GTSAC	1 cut(s)	873
TseI	GCWGC	1 cut(s)	488
Tsp45I	GTSAC	1 cut(s)	873
TspDTI	ATGAA	3 cut(s)	210, 330, 1197
TspGWI	ACGGA	2 cut(s)	168, 407
TspRI	CASTG	2 cut(s)	511, 750
VpaK11BI	GGWCC	1 cut(s)	1040
XceI	RCATGY	1 cut(s)	976
XspI	CTAG	6 cut(s)	155, 188, 284, 612, 621, 884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.