Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

22016143 .. 22018061

Gene Structure 1919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G54230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGGAAAATCTTCAAGCTCGGAGGAAAGTGAAGTGAAGAAAGGGCCATGGACTCCGGAGGAAGACGAGAAGCTCGTAGGCTATATTCAAACGCACGGTCCCGGCAAATGGCGTACCCTTCCCAAGAACGCCGGGTTAAAAAGATGCGGGAAGAGTTGTAGATTGCGATGGACGAATTATCTAAGACCCGATATCAAGAGAGGAGAGTTCTCTCTTCAAGAGGAAGAAACCATCATTCAACTTCATCGTCTTCTTGGAAACAAATGGTCCGCAATTGCTATTCACTTACCAGGAAGAACAGATAATGAAATCAAAAACTATTGGAACACACATATTAAAAAGAAACTCTTACGAATGGGGATTGATCCGGTGACTCATTGTCCCCGCATTAATCTTCTCCAGCTCTCTTCGTTTCTTACCTCATCATTGTTTAAATCTATGTCACAACCGATGAATACTCCATTTGATCTCACTACTTCAAATATTAATCCTGATATCTTGAATCATCTCACTGCCTCTCTCAACAACGTTCAGACCGAATCATACCAACCAAACCAACAGCTTCAAAACGACCTAAACACTGACCAAACCACTTTCACCGGTTTGCTCAACTCAACACCACCCGTTCAATGGCAAAACAATGGAGAATACTTGGGAGATTATCACAGTTATACCGGTACAGGTGATCCATCTAATAACAAAGTCCCTCAAGCCGGAAACTACTCATCAGCCGCATTTGTATCCGACCACATTAATGATGGTGAGAATTTTAAGGCCGGATGGAATTTCAGTTCATCAATGCTAGCGGGAACTTCATCGAGCAGCTCGACACCGTTGAATTCGTCTTCGACTTTTTATGTCAATGGTGGAAGCGAAGATGATAGAGAGAGTTTTGGTAGCGACATGTTGATGTTTCATCATCATCATGATCATAATAATAATGCTTTGAATCTATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

319

Amino Acids

35.74

Weight (kDa)

6.35

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	3.4e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	2.5e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 111	3.2e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 115	3.6e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	55
AciI	CCGC	5 cut(s)	147, 270, 385, 732, 806
AclI	AACGTT	1 cut(s)	528
AclWI	GGATC	2 cut(s)	359, 680
AcsI	RAATTY	3 cut(s)	766, 784, 838
AfaI	GTAC	2 cut(s)	115, 679
AfiI	CCNNNNNNNGG	3 cut(s)	108, 630, 713
AflIII	ACRYGT	1 cut(s)	903
AgeI	ACCGGT	2 cut(s)	599, 674
AhdI	GACNNNNNGTC	1 cut(s)	378
AjnI	CCWGG	1 cut(s)	289
AloI	GAACNNNNNNTCC	2 cut(s)	775, 807
AluBI	AGCT	5 cut(s)	18, 73, 403, 562, 825
AluI	AGCT	5 cut(s)	18, 73, 403, 562, 825
AlwI	GGATC	2 cut(s)	359, 680
Aor13HI	TCCGGA	1 cut(s)	55
AoxI	GGCC	2 cut(s)	44, 774
ApeKI	GCWGC	1 cut(s)	822
ApoI	RAATTY	3 cut(s)	766, 784, 838
ArsI	GACNNNNNNTTYG	2 cut(s)	82, 114
AseI	ATTAAT	3 cut(s)	390, 486, 753
AsiGI	ACCGGT	2 cut(s)	599, 674
Asp700I	GAANNNNTTC	1 cut(s)	10
AspS9I	GGNCC	3 cut(s)	44, 98, 267
AsuC2I	CCSGG	2 cut(s)	102, 133
AsuHPI	GGTGA	4 cut(s)	382, 589, 695, 773
AsuNHI	GCTAGC	1 cut(s)	802
AvaII	GGWCC	2 cut(s)	98, 267
BbsI	GAAGAC	3 cut(s)	69, 242, 837
BbvI	GCAGC	1 cut(s)	834
BccI	CCATC	5 cut(s)	162, 239, 697, 752, 774
BciT130I	CCWGG	1 cut(s)	291
BciVI	GTATCC	1 cut(s)	751
BclI	TGATCA	1 cut(s)	928
BcnI	CCSGG	2 cut(s)	102, 133
BfaI	CTAG	1 cut(s)	803
BfuI	GTATCC	1 cut(s)	751
BisI	GCNGC	2 cut(s)	732, 823
BlsI	GCNGC	2 cut(s)	733, 824
Bme1390I	CCNGG	3 cut(s)	102, 133, 291
Bme18I	GGWCC	2 cut(s)	98, 267
BmeRI	GACNNNNNGTC	1 cut(s)	378
BmgT120I	GGNCC	3 cut(s)	44, 98, 267
BmiI	GGNNCC	1 cut(s)	100
BmrFI	CCNGG	3 cut(s)	102, 133, 291
BmsI	GCATC	1 cut(s)	134
BmtI	GCTAGC	1 cut(s)	806
BpiI	GAAGAC	3 cut(s)	69, 242, 837
BpmI	CTGGAG	1 cut(s)	383
BpuEI	CTTGAG	1 cut(s)	693
BpuMI	CCSGG	2 cut(s)	102, 133
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	4 cut(s)	55, 367, 599, 674
Bsc4I	CCNNNNNNNGG	3 cut(s)	108, 630, 713
Bse118I	RCCGGY	2 cut(s)	599, 674
BseAI	TCCGGA	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	785
BseLI	CCNNNNNNNGG	3 cut(s)	108, 630, 713
BseRI	GAGGAG	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	834
BshFI	GGCC	2 cut(s)	46, 776
BshTI	ACCGGT	2 cut(s)	599, 674
BsiSI	CCGG	8 cut(s)	56, 102, 132, 368, 600, 675, 714, 777
BslFI	GGGAC	3 cut(s)	84, 366, 689
BslI	CCNNNNNNNGG	3 cut(s)	108, 630, 713
BsmFI	GGGAC	3 cut(s)	84, 366, 689
BsnI	GGCC	2 cut(s)	46, 776
Bsp13I	TCCGGA	1 cut(s)	55
Bsp143I	GATC	4 cut(s)	364, 466, 685, 928
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	5 cut(s)	147, 270, 385, 732, 806
BspANI	GGCC	2 cut(s)	46, 776
BspEI	TCCGGA	1 cut(s)	55
BspHI	TCATGA	1 cut(s)	925
BspLI	GGNNCC	1 cut(s)	100
BspOI	GCTAGC	1 cut(s)	806
BspPI	GGATC	2 cut(s)	359, 680
BsrFI	RCCGGY	2 cut(s)	599, 674
BssAI	RCCGGY	2 cut(s)	599, 674
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	4 cut(s)	364, 466, 685, 928
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	3 cut(s)	98, 668, 834
Bst6I	CTCTTC	3 cut(s)	146, 219, 412
BstC8I	GCNNGC	1 cut(s)	804
BstDEI	CTNAG	1 cut(s)	182
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	785
BstKTI	GATC	4 cut(s)	367, 469, 688, 931
BstMBI	GATC	4 cut(s)	364, 466, 685, 928
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	907
BstSCI	CCNGG	3 cut(s)	100, 131, 289
BstV1I	GCAGC	1 cut(s)	834
BstV2I	GAAGAC	3 cut(s)	69, 242, 837
BsuI	GTATCC	1 cut(s)	751
BsuRI	GGCC	2 cut(s)	46, 776
BtgI	CCRYGG	1 cut(s)	47
BtgZI	GCGATG	1 cut(s)	181
BtsCI	GGATG	1 cut(s)	785
BtsI	GCAGTG	1 cut(s)	510
BtsIMutI	CAGTG	2 cut(s)	510, 579
Cac8I	GCNNGC	1 cut(s)	804
CciI	TCATGA	1 cut(s)	925
Cfr10I	RCCGGY	2 cut(s)	599, 674
Cfr13I	GGNCC	3 cut(s)	44, 98, 267
Csp6I	GTAC	2 cut(s)	114, 678
CspAI	ACCGGT	2 cut(s)	599, 674
CviAII	CATG	3 cut(s)	48, 904, 926
CviQI	GTAC	2 cut(s)	114, 678
DdeI	CTNAG	1 cut(s)	182
DpnI	GATC	4 cut(s)	366, 468, 687, 930
DpnII	GATC	4 cut(s)	364, 466, 685, 928
DraI	TTTAAA	1 cut(s)	433
DriI	GACNNNNNGTC	1 cut(s)	378
Eam1104I	CTCTTC	3 cut(s)	146, 219, 412
Eam1105I	GACNNNNNGTC	1 cut(s)	378
EarI	CTCTTC	3 cut(s)	146, 219, 412
Eco130I	CCWWGG	1 cut(s)	47
Eco32I	GATATC	2 cut(s)	193, 496
Eco47I	GGWCC	2 cut(s)	98, 267
EcoRI	GAATTC	1 cut(s)	838
EcoRII	CCWGG	1 cut(s)	289
EcoRV	GATATC	2 cut(s)	193, 496
EcoT14I	CCWWGG	1 cut(s)	47
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	3 cut(s)	51, 907, 929
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FaqI	GGGAC	3 cut(s)	84, 366, 689
FatI	CATG	3 cut(s)	47, 903, 925
FauI	CCCGC	3 cut(s)	140, 392, 799
FbaI	TGATCA	1 cut(s)	928
Fnu4HI	GCNGC	2 cut(s)	732, 823
FokI	GGATG	1 cut(s)	792
Fsp4HI	GCNGC	2 cut(s)	732, 823
FspBI	CTAG	1 cut(s)	803
GluI	GCNGC	2 cut(s)	732, 823
GsuI	CTGGAG	1 cut(s)	383
HaeIII	GGCC	2 cut(s)	46, 776
HapII	CCGG	8 cut(s)	56, 102, 132, 368, 600, 675, 714, 777
Hin1II	CATG	3 cut(s)	51, 907, 929
HinfI	GANTC	5 cut(s)	52, 373, 502, 539, 949
HpaII	CCGG	8 cut(s)	56, 102, 132, 368, 600, 675, 714, 777
HphI	GGTGA	4 cut(s)	382, 589, 695, 773
Hpy188I	TCNGA	3 cut(s)	22, 534, 745
Hpy188III	TCNNGA	6 cut(s)	56, 196, 218, 491, 499, 926
HpyAV	CCTTC	1 cut(s)	128
HpyCH4III	ACNGT	3 cut(s)	98, 668, 834
HpyCH4IV	ACGT	1 cut(s)	528
HpyF3I	CTNAG	1 cut(s)	182
HpySE526I	ACGT	1 cut(s)	528
Hsp92II	CATG	3 cut(s)	51, 907, 929
Kpn2I	TCCGGA	1 cut(s)	55
Ksp22I	TGATCA	1 cut(s)	928
Kzo9I	GATC	4 cut(s)	364, 466, 685, 928
Lsp1109I	GCAGC	1 cut(s)	834
LweI	GCATC	1 cut(s)	134
MaeI	CTAG	1 cut(s)	803
MaeII	ACGT	1 cut(s)	528
MaeIII	GTNAC	2 cut(s)	370, 441
MalI	GATC	4 cut(s)	366, 468, 687, 930
MboI	GATC	4 cut(s)	364, 466, 685, 928
MfeI	CAATTG	1 cut(s)	273
MluCI	AATT	5 cut(s)	175, 273, 766, 784, 838
MlyI	GAGTC	2 cut(s)	46, 367
MmeI	TCCRAC	1 cut(s)	768
MnlI	CCTC	7 cut(s)	16, 52, 194, 214, 430, 526, 717
MroI	TCCGGA	1 cut(s)	55
MroXI	GAANNNNTTC	1 cut(s)	10
MseI	TTAA	7 cut(s)	137, 336, 390, 432, 486, 753, 771
MslI	CAYNNNNRTG	3 cut(s)	753, 908, 924
MspI	CCGG	8 cut(s)	56, 102, 132, 368, 600, 675, 714, 777
MspR9I	CCNGG	3 cut(s)	102, 133, 291
MunI	CAATTG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	291
NciI	CCSGG	2 cut(s)	102, 133
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	4 cut(s)	364, 466, 685, 928
NheI	GCTAGC	1 cut(s)	802
NlaIII	CATG	3 cut(s)	51, 907, 929
NlaIV	GGNNCC	1 cut(s)	100
NmuCI	GTSAC	2 cut(s)	370, 441
NspI	RCATGY	1 cut(s)	907
PagI	TCATGA	1 cut(s)	925
PciI	ACATGT	1 cut(s)	903
PcsI	WCGNNNNNNNCGW	3 cut(s)	72, 534, 824
PdmI	GAANNNNTTC	1 cut(s)	10
PfeI	GAWTC	3 cut(s)	502, 539, 949
PinAI	ACCGGT	2 cut(s)	599, 674
PkrI	GCNGC	2 cut(s)	733, 824
PleI	GAGTC	2 cut(s)	46, 367
PpsI	GAGTC	2 cut(s)	46, 367
PscI	ACATGT	1 cut(s)	903
PshBI	ATTAAT	3 cut(s)	390, 486, 753
Psp1406I	AACGTT	1 cut(s)	528
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	100
PspPI	GGNCC	3 cut(s)	44, 98, 267
RsaI	GTAC	2 cut(s)	115, 679
RsaNI	GTAC	2 cut(s)	114, 678
RseI	CAYNNNNRTG	3 cut(s)	753, 908, 924
SaqAI	TTAA	7 cut(s)	137, 336, 390, 432, 486, 753, 771
SatI	GCNGC	2 cut(s)	732, 823
Sau3AI	GATC	4 cut(s)	364, 466, 685, 928
Sau96I	GGNCC	3 cut(s)	44, 98, 267
SchI	GAGTC	2 cut(s)	46, 367
ScrFI	CCNGG	3 cut(s)	102, 133, 291
SetI	ASST	9 cut(s)	20, 75, 405, 422, 531, 564, 576, 685, 827
SfaNI	GCATC	1 cut(s)	134
SinI	GGWCC	2 cut(s)	98, 267
SmiMI	CAYNNNNRTG	3 cut(s)	753, 908, 924
SmlI	CTYRAG	1 cut(s)	708
SmoI	CTYRAG	1 cut(s)	708
Sse9I	AATT	5 cut(s)	175, 273, 766, 784, 838
SsiI	CCGC	5 cut(s)	147, 270, 385, 732, 806
SspI	AATATT	1 cut(s)	484
SspMI	CTAG	1 cut(s)	803
StyD4I	CCNGG	3 cut(s)	100, 131, 289
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	3 cut(s)	98, 668, 834
TaiI	ACGT	1 cut(s)	531
TaqI	TCGA	3 cut(s)	818, 827, 848
TaqII	GACCGA	1 cut(s)	551
TasI	AATT	5 cut(s)	175, 273, 766, 784, 838
TauI	GCSGC	1 cut(s)	734
TfiI	GAWTC	3 cut(s)	502, 539, 949
Tru1I	TTAA	7 cut(s)	137, 336, 390, 432, 486, 753, 771
Tru9I	TTAA	7 cut(s)	137, 336, 390, 432, 486, 753, 771
TscAI	CASTG	2 cut(s)	517, 586
TseFI	GTSAC	2 cut(s)	370, 441
TseI	GCWGC	1 cut(s)	822
Tsp45I	GTSAC	2 cut(s)	370, 441
TspDTI	ATGAA	6 cut(s)	233, 321, 467, 783, 804, 905
TspRI	CASTG	2 cut(s)	517, 586
VpaK11BI	GGWCC	2 cut(s)	98, 267
VspI	ATTAAT	3 cut(s)	390, 486, 753
XapI	RAATTY	3 cut(s)	766, 784, 838
XceI	RCATGY	1 cut(s)	907
XcmI	CCANNNNNNNNNTGG	2 cut(s)	627, 755
XmnI	GAANNNNTTC	1 cut(s)	10
XspI	CTAG	1 cut(s)	803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.