AT5G55020
MYB Family

myb domain protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
N/A
Physical Location & Seq
Reverse (-)
22324599 .. 22326418
1820 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G55020.1

Sequence Viewer

Length: 1572 bp
ATGATCATGTACGGAGGAGGAGGAGCAGGGAAGGACGGTGGATCCACCAATCACTTATCAGACGGAGGAGTGATATTGAAGAAAGGTCCATGGACGGCGGCGGAAGATGAGATACTTGCTGCGTACGTTAGAGAGAACGGTGAAGGGAATTGGAACGCCGTTCAGAAAAACACAGGTTTGGCTCGTTGCGGCAAAAGCTGCCGTCTTCGATGGGCCAATCACCTCCGACCAAATCTGAAAAAAGGCTCTTTCACCGGTGACGAAGAACGTCTCATCATTCAGCTTCATGCTCAGCTTGGTAACAAATGGGCTCGCATGGCTGCTCAGTTACCGGGAAGAACAGACAACGAGATTAAGAACTATTGGAACACGAGATTGAAACGACTTCTTCGCCAAGGACTTCCTCTTTATCCTCCAGATATTATCCCTAACCATCAACTCCATCCACATCCACATCATCAACAACAACAGCAACATAACCATCATCATCATCATCATCAACAACAACAACAACATCAACAAATGTATTTTCAACCACAATCTTCACAACGAAACACACCATCATCTTCCCCTCTTCCATCTCCAACACCAGCAAACGCAAAGTCCTCATCATCCTTCACTTTTCATACCACGACTGCTAACCTCCTCCATCCACTTAGCCCTCACACTCCAAACACACCATCTCAACTCTCTTCCACACCGCCTCCACCACCACTTTCCTCTCCTTTATGTTCCCCTCGCAACAACCAATACCCGACCCTTCCCCTCTTTGCCCTCCCGCGTTCCCAAATCAACAACAACAACAACGGAAATTTCACTTTCCCTAGACCTCCACCTCTCCTTCAACCGCCTTCATCACTCTTCGCAAAACGTTACAACAATGCTAACACTCCTCTTAATTGCATCAACCGCGTCTCAACCGCACCATTTTCCCCTGTTTCAAGAGACTCCTACACTTCCTTTCTTACATTGCCTTACCCTTCCCCAACCGCTCAAACCGCTACTTACCACAATACTAATAACCCTTACTCTTCCTCTCCTTCCTTCTCTTTAAACCCTTCTTCTTCTTCTTACCCTACATCAACTTCTTCCCCAAGCTTTCTTCACTCCCATTACACTCCTTCTTCCACCTCATTTCATACCAACCCAGTTTACTCCATGAAACAAGAGCAGCTCCCTTCAAACCAAATTCCCCAAATAGATGGCTTCAATAACGTCAACAACTTCACAGACAACGAGAGACAGAATCATAACCTTAACAGTTCCGGTGCTCATAGAAGAAGTAGTAGCTGCAGCCTCTTAGAGGATGTCTTCGAAGAGGCCGAAGCTTTAGCCTCTGGAGGCAGAGGCCGACCTCCAAAACGAAGACAACTCACAGCTTCTCTTCCGAACCACAACAACAACACCAACAACAACGACAACTTCTTCTCGGTTAGTTTCGGACATTATGATTCTTCTGACAACTTATGTTCCTTGCAAGGTAAAACTAAAACCACTTACAACACTTCAAATCTAAACTACTCTTCTCTCCAAGTAAAATGTAAAATGTTTATGATCAAAACGCAGATTTGA
Functional Annotation

Protein Analysis

523

Amino Acids

58.22

Weight (kDa)

9.65

Isoelectric Point (pI)

61.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 28 - 75 2.7e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 31 - 89 2.7e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 81 - 125 2e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 84 - 128 2.2e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 992
AccII CGCG 2 cut(s) 781, 912
AclI AACGTT 1 cut(s) 871
AclWI GGATC 2 cut(s) 36, 49
AcsI RAATTY 2 cut(s) 811, 1188
AfaI GTAC 2 cut(s) 11, 125
AfiI CCNNNNNNNGG 1 cut(s) 1303
AgeI ACCGGT 1 cut(s) 254
AgsI TTSAA 8 cut(s) 79, 379, 533, 845, 942, 1182, 1210, 1509
AluBI AGCT 8 cut(s) 198, 283, 295, 1098, 1174, 1290, 1328, 1379
AluI AGCT 8 cut(s) 198, 283, 295, 1098, 1174, 1290, 1328, 1379
Alw21I GWGCWC 1 cut(s) 1273
Alw26I GTCTC 4 cut(s) 275, 919, 939, 1234
AlwI GGATC 2 cut(s) 36, 49
AoxI GGCC 3 cut(s) 213, 1320, 1348
ApeKI GCWGC 6 cut(s) 119, 198, 320, 1171, 1290, 1293
ApoI RAATTY 2 cut(s) 811, 1188
ArsI GACNNNNNNTTYG 2 cut(s) 587, 619
AsiGI ACCGGT 1 cut(s) 254
AspS9I GGNCC 2 cut(s) 86, 213
AsuC2I CCSGG 1 cut(s) 333
AsuHPI GGTGA 4 cut(s) 152, 212, 244, 269
AsuII TTCGAA 1 cut(s) 1314
AvaII GGWCC 1 cut(s) 86
BamHI GGATCC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 313
BarI GAAGNNNNNNTAC 2 cut(s) 96, 128
BauI CACGAG 1 cut(s) 370
BbsI GAAGAC 3 cut(s) 197, 1303, 1372
Bbv12I GWGCWC 1 cut(s) 1273
BbvI GCAGC 6 cut(s) 106, 185, 307, 1183, 1277, 1305
BccI CCATC 9 cut(s) 204, 441, 450, 489, 568, 586, 657, 688, 1196
BceAI ACGGC 3 cut(s) 111, 143, 186
BclI TGATCA 2 cut(s) 3, 1554
BcnI CCSGG 1 cut(s) 333
BcoDI GTCTC 4 cut(s) 275, 919, 939, 1234
BfaI CTAG 1 cut(s) 825
BfmI CTRYAG 1 cut(s) 1291
BisI GCNGC 8 cut(s) 99, 120, 190, 199, 321, 1172, 1291, 1294
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 8 cut(s) 100, 121, 191, 200, 322, 1173, 1292, 1295
Bme1390I CCNGG 1 cut(s) 333
Bme18I GGWCC 1 cut(s) 86
BmgT120I GGNCC 2 cut(s) 86, 213
BmiI GGNNCC 1 cut(s) 43
BmrFI CCNGG 1 cut(s) 333
BmrI ACTGGG 1 cut(s) 1142
BmsI GCATC 1 cut(s) 912
BmuI ACTGGG 1 cut(s) 1142
BpiI GAAGAC 3 cut(s) 197, 1303, 1372
BpmI CTGGAG 2 cut(s) 399, 1359
Bpu1102I GCTNAGC 1 cut(s) 291
Bpu14I TTCGAA 1 cut(s) 1314
BpuMI CCSGG 1 cut(s) 333
BsaJI CCNNGG 2 cut(s) 89, 394
BsaWI WCCGGW 2 cut(s) 254, 1265
BsaXI ACNNNNNCTCC 2 cut(s) 688, 718
Bsc4I CCNNNNNNNGG 1 cut(s) 1303
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 1 cut(s) 1148
Bse3DI GCAATG 1 cut(s) 968
BseDI CCNNGG 2 cut(s) 89, 394
BseGI GGATG 5 cut(s) 442, 448, 611, 649, 1312
BseLI CCNNNNNNNGG 1 cut(s) 1303
BseMI GCAATG 1 cut(s) 968
BseMII CTCAG 2 cut(s) 305, 338
BseNI ACTGG 1 cut(s) 1148
BseRI GAGGAG 6 cut(s) 30, 33, 36, 81, 635, 882
BseXI GCAGC 6 cut(s) 106, 185, 307, 1183, 1277, 1305
Bsh1236I CGCG 2 cut(s) 781, 912
BshFI GGCC 3 cut(s) 215, 1322, 1350
BshTI ACCGGT 1 cut(s) 254
BsiHKAI GWGCWC 1 cut(s) 1273
BsiSI CCGG 3 cut(s) 255, 332, 1266
BsiWI CGTACG 1 cut(s) 123
BslI CCNNNNNNNGG 1 cut(s) 1303
BsmAI GTCTC 4 cut(s) 275, 919, 939, 1234
BsmBI CGTCTC 2 cut(s) 275, 919
BsnI GGCC 3 cut(s) 215, 1322, 1350
Bsp119I TTCGAA 1 cut(s) 1314
Bsp1286I GDGCHC 2 cut(s) 313, 1273
Bsp143I GATC 3 cut(s) 3, 41, 1554
Bsp1720I GCTNAGC 1 cut(s) 291
Bsp19I CCATGG 1 cut(s) 89
BspANI GGCC 3 cut(s) 215, 1322, 1350
BspCNI CTCAG 2 cut(s) 304, 337
BspFNI CGCG 2 cut(s) 781, 912
BspLI GGNNCC 1 cut(s) 43
BspMAI CTGCAG 1 cut(s) 1295
BspPI GGATC 2 cut(s) 36, 49
BspT104I TTCGAA 1 cut(s) 1314
BsrBI CCGCTC 1 cut(s) 992
BsrDI GCAATG 1 cut(s) 968
BsrFI RCCGGY 1 cut(s) 254
BsrI ACTGG 1 cut(s) 1148
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 2 cut(s) 89, 394
BssMI GATC 3 cut(s) 3, 41, 1554
BssSI CACGAG 1 cut(s) 370
BssT1I CCWWGG 2 cut(s) 89, 394
Bst2BI CACGAG 1 cut(s) 370
Bst4CI ACNGT 3 cut(s) 38, 140, 1262
Bst6I CTCTTC 7 cut(s) 579, 697, 866, 1036, 1311, 1389, 1528
BstAPI GCANNNNNTGC 1 cut(s) 198
BstBI TTCGAA 1 cut(s) 1314
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 4 cut(s) 291, 324, 656, 1300
BstDSI CCRYGG 1 cut(s) 89
BstENI CCTNNNNNAGG 1 cut(s) 1301
BstF5I GGATG 5 cut(s) 442, 448, 611, 649, 1312
BstFNI CGCG 2 cut(s) 781, 912
BstKTI GATC 3 cut(s) 6, 44, 1557
BstMAI GTCTC 4 cut(s) 275, 919, 939, 1234
BstMBI GATC 3 cut(s) 3, 41, 1554
BstMWI GCNNNNNNNGC 5 cut(s) 195, 198, 317, 909, 998
BstSCI CCNGG 1 cut(s) 331
BstSFI CTRYAG 1 cut(s) 1291
BstUI CGCG 2 cut(s) 781, 912
BstV1I GCAGC 6 cut(s) 106, 185, 307, 1183, 1277, 1305
BstV2I GAAGAC 3 cut(s) 197, 1303, 1372
BstX2I RGATCY 1 cut(s) 41
BstXI CCANNNNNNTGG 1 cut(s) 1202
BstYI RGATCY 1 cut(s) 41
BsuRI GGCC 3 cut(s) 215, 1322, 1350
BtgI CCRYGG 1 cut(s) 89
BtsCI GGATG 5 cut(s) 442, 448, 611, 649, 1312
Cac8I GCNNGC 1 cut(s) 313
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 2 cut(s) 86, 213
CseI GACGC 1 cut(s) 901
Csp6I GTAC 2 cut(s) 10, 124
CspAI ACCGGT 1 cut(s) 254
CviAII CATG 5 cut(s) 7, 90, 287, 316, 1159
CviQI GTAC 2 cut(s) 10, 124
DdeI CTNAG 4 cut(s) 291, 324, 656, 1300
DpnI GATC 3 cut(s) 5, 43, 1556
DpnII GATC 3 cut(s) 3, 41, 1554
DraI TTTAAA 1 cut(s) 1053
Eam1104I CTCTTC 7 cut(s) 579, 697, 866, 1036, 1311, 1389, 1528
EarI CTCTTC 7 cut(s) 579, 697, 866, 1036, 1311, 1389, 1528
EciI GGCGGA 1 cut(s) 116
Eco130I CCWWGG 2 cut(s) 89, 394
Eco24I GRGCYC 1 cut(s) 313
Eco47I GGWCC 1 cut(s) 86
EcoNI CCTNNNNNAGG 1 cut(s) 1301
EcoT14I CCWWGG 2 cut(s) 89, 394
EcoT38I GRGCYC 1 cut(s) 313
ErhI CCWWGG 2 cut(s) 89, 394
Esp3I CGTCTC 2 cut(s) 275, 919
FaeI CATG 5 cut(s) 10, 93, 290, 319, 1162
FatI CATG 5 cut(s) 6, 89, 286, 315, 1158
FauI CCCGC 1 cut(s) 786
FbaI TGATCA 2 cut(s) 3, 1554
Fnu4HI GCNGC 8 cut(s) 99, 120, 190, 199, 321, 1172, 1291, 1294
FokI GGATG 5 cut(s) 429, 435, 598, 636, 1319
FriOI GRGCYC 1 cut(s) 313
Fsp4HI GCNGC 8 cut(s) 99, 120, 190, 199, 321, 1172, 1291, 1294
FspBI CTAG 1 cut(s) 825
GluI GCNGC 8 cut(s) 99, 120, 190, 199, 321, 1172, 1291, 1294
GsuI CTGGAG 2 cut(s) 399, 1359
HaeIII GGCC 3 cut(s) 215, 1322, 1350
HapII CCGG 3 cut(s) 255, 332, 1266
HgaI GACGC 1 cut(s) 901
Hin1II CATG 5 cut(s) 10, 93, 290, 319, 1162
HincII GTYRAC 1 cut(s) 1219
HindII GTYRAC 1 cut(s) 1219
HindIII AAGCTT 2 cut(s) 1096, 1326
HinfI GANTC 3 cut(s) 947, 1246, 1451
HpaII CCGG 3 cut(s) 255, 332, 1266
HphI GGTGA 4 cut(s) 152, 212, 244, 269
Hpy166II GTNNAC 2 cut(s) 1153, 1219
Hpy188I TCNGA 7 cut(s) 61, 165, 227, 237, 1389, 1442, 1459
Hpy188III TCNNGA 3 cut(s) 416, 942, 1338
Hpy8I GTNNAC 2 cut(s) 1153, 1219
HpyCH4III ACNGT 3 cut(s) 38, 140, 1262
HpyCH4IV ACGT 4 cut(s) 126, 268, 871, 1215
HpyCH4V TGCA 3 cut(s) 903, 1293, 1477
HpyF10VI GCNNNNNNNGC 5 cut(s) 195, 198, 317, 909, 998
HpyF3I CTNAG 4 cut(s) 291, 324, 656, 1300
HpySE526I ACGT 4 cut(s) 126, 268, 871, 1215
Hsp92II CATG 5 cut(s) 10, 93, 290, 319, 1162
Ksp22I TGATCA 2 cut(s) 3, 1554
Kzo9I GATC 3 cut(s) 3, 41, 1554
LmnI GCTCC 2 cut(s) 23, 1179
Lsp1109I GCAGC 6 cut(s) 106, 185, 307, 1183, 1277, 1305
LweI GCATC 1 cut(s) 912
MaeI CTAG 1 cut(s) 825
MaeII ACGT 4 cut(s) 126, 268, 871, 1215
MaeIII GTNAC 4 cut(s) 257, 299, 327, 872
MalI GATC 3 cut(s) 5, 43, 1556
MbiI CCGCTC 1 cut(s) 992
MboI GATC 3 cut(s) 3, 41, 1554
MflI RGATCY 1 cut(s) 41
MhlI GDGCHC 2 cut(s) 313, 1273
MluCI AATT 4 cut(s) 148, 811, 898, 1188
MlyI GAGTC 1 cut(s) 941
MmeI TCCRAC 2 cut(s) 250, 608
MseI TTAA 4 cut(s) 354, 897, 1052, 1257
MspI CCGG 3 cut(s) 255, 332, 1266
MspR9I CCNGG 1 cut(s) 333
MvnI CGCG 2 cut(s) 781, 912
MwoI GCNNNNNNNGC 5 cut(s) 195, 198, 317, 909, 998
NciI CCSGG 1 cut(s) 333
NcoI CCATGG 1 cut(s) 89
NdeII GATC 3 cut(s) 3, 41, 1554
NlaIII CATG 5 cut(s) 10, 93, 290, 319, 1162
NlaIV GGNNCC 1 cut(s) 43
NmuCI GTSAC 1 cut(s) 257
NspV TTCGAA 1 cut(s) 1314
PcsI WCGNNNNNNNCGW 1 cut(s) 1320
PfeI GAWTC 2 cut(s) 1246, 1451
Pfl23II CGTACG 1 cut(s) 123
PinAI ACCGGT 1 cut(s) 254
PkrI GCNGC 8 cut(s) 100, 121, 191, 200, 322, 1173, 1292, 1295
PleI GAGTC 1 cut(s) 941
PpsI GAGTC 1 cut(s) 941
Psp1406I AACGTT 1 cut(s) 871
PspLI CGTACG 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 43
PspPI GGNCC 2 cut(s) 86, 213
PstI CTGCAG 1 cut(s) 1295
PsuI RGATCY 1 cut(s) 41
RsaI GTAC 2 cut(s) 11, 125
RsaNI GTAC 2 cut(s) 10, 124
SaqAI TTAA 4 cut(s) 354, 897, 1052, 1257
SatI GCNGC 8 cut(s) 99, 120, 190, 199, 321, 1172, 1291, 1294
Sau3AI GATC 3 cut(s) 3, 41, 1554
Sau96I GGNCC 2 cut(s) 86, 213
SchI GAGTC 1 cut(s) 941
ScrFI CCNGG 1 cut(s) 333
SduI GDGCHC 2 cut(s) 313, 1273
SfaNI GCATC 1 cut(s) 912
SfcI CTRYAG 1 cut(s) 1291
SfuI TTCGAA 1 cut(s) 1314
SgrAI CRCCGGYG 1 cut(s) 254
SinI GGWCC 1 cut(s) 86
Sse9I AATT 4 cut(s) 148, 811, 898, 1188
SspMI CTAG 1 cut(s) 825
StyD4I CCNGG 1 cut(s) 331
StyI CCWWGG 2 cut(s) 89, 394
TaaI ACNGT 3 cut(s) 38, 140, 1262
TaiI ACGT 4 cut(s) 129, 271, 874, 1218
TaqI TCGA 2 cut(s) 208, 1314
TasI AATT 4 cut(s) 148, 811, 898, 1188
TauI GCSGC 2 cut(s) 101, 192
TfiI GAWTC 2 cut(s) 1246, 1451
Tru1I TTAA 4 cut(s) 354, 897, 1052, 1257
Tru9I TTAA 4 cut(s) 354, 897, 1052, 1257
TseFI GTSAC 1 cut(s) 257
TseI GCWGC 6 cut(s) 119, 198, 320, 1171, 1290, 1293
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 5 cut(s) 275, 614, 843, 1127, 1175
TspGWI ACGGA 3 cut(s) 27, 78, 822
VpaK11BI GGWCC 1 cut(s) 86
XagI CCTNNNNNAGG 1 cut(s) 1301
XapI RAATTY 2 cut(s) 811, 1188
XspI CTAG 1 cut(s) 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.