AT5G60890
MYB Family

atmyb34, atr1, myb34 myb34 (myb domain protein 34)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
N/A
Physical Location & Seq
Forward (+)
24494291 .. 24496371
2081 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G60890.1

Sequence Viewer

Length: 888 bp
ATGGTGAGGACACCATGTTGCAAAGAAGAAGGAATAAAGAAAGGAGCTTGGACTCCTGAGGAAGATCAAAAGCTTATTGCTTATCTTCACCTACATGGTGAAGGTGGATGGCGTACTCTCCCTGAAAAAGCTGGATTGAAGAGATGTGGAAAGAGTTGTAGATTGAGATGGGCTAATTACTTAAGACCCGACATTAAGAGAGGAGAGTTTAGTCCTGAAGAAGACGACACTATCATCAAGCTTCATGCTCTTAAGGGTAACAAGTGGGCCGCAATCGCCACTAGCTTGGCGGGACGAACTGACAACGAAATAAAAAACTATTGGAACACAAATCTCAAGAAGCGGTTGAAGCAAAAAGGCATCGATGCAATCACTCACAAACCGATCAATTCAACCGGTCAAACCGGTTTCGAACCAAAAGTAAATAAACCGGTATATTCATCCGGTTCCGCTAGGCTTCTTAACCGCGTCGCAAGCAAATACGCGGTTGAATTAAACCGGGACTTACTGACCGGGATCATCAGTGGAAACTCCACCGTCGCCGAAGATTCACAAAACTCCGGCGACGTTGATTCTCCGACCTCCACATTGCTCAACAAAATGGCGGCAACATCAGTTTTGATCAACACTACGACTACATATTCCGGCTTCTCCGACAACTGTTCTTTCACTGATGAATTCAACGAATTCTTTAACAATGAAGAGATCTCCGATATTTACACGACTGTCGATAATTTTGGGTTTATGGAAGAGTTAAAGAGTATTTTAAGCTACGGCGATGCCAGCGCCGGAGTTATTGAAAATTCGCCGGAGGTCAATGTAGCTGATGCAATGGAGTTCATTGATTCCTGGAACGAAGATGACAATATGGTTGGAGTCTTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000162 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0002213 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006082 GO:0006109 GO:0006355 GO:0006357 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009267 GO:0009308 GO:0009309 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009755 GO:0009759 GO:0009819 GO:0009867 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010104 GO:0010105 GO:0010438 GO:0010439 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010675 GO:0014070 GO:0016043 GO:0016053 GO:0016143 GO:0016144 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023051 GO:0023052 GO:0023057 GO:0030054 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0031930 GO:0032502 GO:0032870 GO:0033036 GO:0033037 GO:0033554 GO:0033993 GO:0034641 GO:0042221 GO:0042343 GO:0042401 GO:0042430 GO:0042435 GO:0042493 GO:0042545 GO:0042594 GO:0042742 GO:0042762 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043436 GO:0043455 GO:0043565 GO:0044106 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0045087 GO:0045229 GO:0045893 GO:0045935 GO:0046219 GO:0046394 GO:0046483 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0055044 GO:0060255 GO:0062012 GO:0065007 GO:0065009 GO:0070297 GO:0070298 GO:0070727 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071496 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1900376 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901657 GO:1901659 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:1902680 GO:1903506 GO:1903508 GO:1905255 GO:2000070 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

295

Amino Acids

32.74

Weight (kDa)

5.22

Isoelectric Point (pI)

34.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 2.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 2.7e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 1.9e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 119 2.3e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 468, 485
AciI CCGC 7 cut(s) 270, 290, 343, 450, 466, 485, 605
AclWI GGATC 1 cut(s) 524
AcsI RAATTY 3 cut(s) 677, 686, 802
AcuI CTGAAG 1 cut(s) 237
AfaI GTAC 1 cut(s) 115
AflII CTTAAG 2 cut(s) 181, 251
AgeI ACCGGT 3 cut(s) 395, 404, 430
AgsI TTSAA 6 cut(s) 139, 349, 393, 491, 682, 800
AjnI CCWGG 1 cut(s) 848
AluBI AGCT 7 cut(s) 47, 73, 131, 241, 285, 771, 824
AluI AGCT 7 cut(s) 47, 73, 131, 241, 285, 771, 824
AlwI GGATC 1 cut(s) 524
AoxI GGCC 1 cut(s) 267
ApoI RAATTY 3 cut(s) 677, 686, 802
AsiGI ACCGGT 3 cut(s) 395, 404, 430
AspLEI GCGC 1 cut(s) 788
AspS9I GGNCC 1 cut(s) 267
AsuC2I CCSGG 2 cut(s) 500, 514
AsuHPI GGTGA 3 cut(s) 16, 80, 110
AsuII TTCGAA 1 cut(s) 411
AxyI CCTNAGG 1 cut(s) 57
BbsI GAAGAC 1 cut(s) 228
BccI CCATC 2 cut(s) 102, 162
BceAI ACGGC 1 cut(s) 790
BciT130I CCWGG 1 cut(s) 850
BclI TGATCA 1 cut(s) 621
BcnI CCSGG 2 cut(s) 500, 514
BfaI CTAG 2 cut(s) 282, 453
BfoI RGCGCY 1 cut(s) 789
BfrI CTTAAG 2 cut(s) 181, 251
BglII AGATCT 1 cut(s) 705
BisI GCNGC 2 cut(s) 270, 606
BlsI GCNGC 2 cut(s) 271, 607
Bme1390I CCNGG 3 cut(s) 500, 514, 850
BmgT120I GGNCC 1 cut(s) 267
BmiI GGNNCC 1 cut(s) 448
BmrFI CCNGG 3 cut(s) 500, 514, 850
BmsI GCATC 4 cut(s) 355, 369, 769, 817
BpiI GAAGAC 1 cut(s) 228
Bpu14I TTCGAA 1 cut(s) 411
BpuEI CTTGAG 1 cut(s) 320
BpuMI CCSGG 2 cut(s) 500, 514
Bsa29I ATCGAT 1 cut(s) 363
BsaWI WCCGGW 4 cut(s) 395, 404, 430, 443
BsaXI ACNNNNNCTCC 1 cut(s) 867
Bse118I RCCGGY 3 cut(s) 395, 404, 430
Bse21I CCTNAGG 1 cut(s) 57
Bse3DI GCAATG 2 cut(s) 587, 837
BseBI CCWGG 1 cut(s) 850
BseCI ATCGAT 1 cut(s) 363
BseGI GGATG 2 cut(s) 113, 440
BseMI GCAATG 2 cut(s) 587, 837
BseMII CTCAG 1 cut(s) 48
BseRI GAGGAG 1 cut(s) 216
Bsh1236I CGCG 2 cut(s) 468, 485
BshFI GGCC 1 cut(s) 269
BshTI ACCGGT 3 cut(s) 395, 404, 430
BshVI ATCGAT 1 cut(s) 363
BslFI GGGAC 2 cut(s) 306, 515
BsmFI GGGAC 2 cut(s) 306, 515
BsnI GGCC 1 cut(s) 269
Bsp119I TTCGAA 1 cut(s) 411
Bsp143I GATC 5 cut(s) 64, 384, 516, 621, 705
BspACI CCGC 7 cut(s) 270, 290, 343, 450, 466, 485, 605
BspANI GGCC 1 cut(s) 269
BspCNI CTCAG 1 cut(s) 49
BspDI ATCGAT 1 cut(s) 363
BspFNI CGCG 2 cut(s) 468, 485
BspLI GGNNCC 1 cut(s) 448
BspPI GGATC 1 cut(s) 524
BspT104I TTCGAA 1 cut(s) 411
BspTI CTTAAG 2 cut(s) 181, 251
BsrDI GCAATG 2 cut(s) 587, 837
BsrFI RCCGGY 3 cut(s) 395, 404, 430
BssAI RCCGGY 3 cut(s) 395, 404, 430
BssMI GATC 5 cut(s) 64, 384, 516, 621, 705
Bst2UI CCWGG 1 cut(s) 850
Bst4CI ACNGT 3 cut(s) 538, 662, 727
Bst6I CTCTTC 3 cut(s) 134, 696, 744
BstAFI CTTAAG 2 cut(s) 181, 251
BstBI TTCGAA 1 cut(s) 411
BstC8I GCNNGC 2 cut(s) 475, 784
BstDEI CTNAG 1 cut(s) 57
BstF5I GGATG 2 cut(s) 113, 440
BstFNI CGCG 2 cut(s) 468, 485
BstH2I RGCGCY 1 cut(s) 789
BstHHI GCGC 1 cut(s) 788
BstKTI GATC 5 cut(s) 67, 387, 519, 624, 708
BstMBI GATC 5 cut(s) 64, 384, 516, 621, 705
BstMWI GCNNNNNNNGC 4 cut(s) 275, 349, 474, 783
BstNI CCWGG 1 cut(s) 850
BstSCI CCNGG 3 cut(s) 498, 512, 848
BstUI CGCG 2 cut(s) 468, 485
BstV2I GAAGAC 1 cut(s) 228
BstX2I RGATCY 1 cut(s) 705
BstXI CCANNNNNNTGG 1 cut(s) 286
BstYI RGATCY 1 cut(s) 705
Bsu15I ATCGAT 1 cut(s) 363
Bsu36I CCTNAGG 1 cut(s) 57
BsuRI GGCC 1 cut(s) 269
BsuTUI ATCGAT 1 cut(s) 363
BtgZI GCGATG 1 cut(s) 792
BtsCI GGATG 2 cut(s) 113, 440
BtsIMutI CAGTG 2 cut(s) 529, 669
Cac8I GCNNGC 2 cut(s) 475, 784
CfoI GCGC 1 cut(s) 788
Cfr10I RCCGGY 3 cut(s) 395, 404, 430
Cfr13I GGNCC 1 cut(s) 267
ClaI ATCGAT 1 cut(s) 363
CseI GACGC 1 cut(s) 457
Csp6I GTAC 1 cut(s) 114
CspAI ACCGGT 3 cut(s) 395, 404, 430
CviAII CATG 3 cut(s) 15, 95, 245
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 1 cut(s) 57
DpnI GATC 5 cut(s) 66, 386, 518, 623, 707
DpnII GATC 5 cut(s) 64, 384, 516, 621, 705
Eam1104I CTCTTC 3 cut(s) 134, 696, 744
EarI CTCTTC 3 cut(s) 134, 696, 744
Eco57I CTGAAG 1 cut(s) 237
Eco81I CCTNAGG 1 cut(s) 57
EcoRI GAATTC 2 cut(s) 677, 686
EcoRII CCWGG 1 cut(s) 848
FaeI CATG 3 cut(s) 18, 98, 248
FaiI YATR 7 cut(s) 16, 96, 246, 436, 640, 746, 869
FaqI GGGAC 2 cut(s) 306, 515
FatI CATG 3 cut(s) 14, 94, 244
FauI CCCGC 1 cut(s) 283
FbaI TGATCA 1 cut(s) 621
Fnu4HI GCNGC 2 cut(s) 270, 606
FokI GGATG 2 cut(s) 120, 427
Fsp4HI GCNGC 2 cut(s) 270, 606
FspBI CTAG 2 cut(s) 282, 453
GlaI GCGC 1 cut(s) 787
GluI GCNGC 2 cut(s) 270, 606
HaeII RGCGCY 1 cut(s) 789
HaeIII GGCC 1 cut(s) 269
HgaI GACGC 1 cut(s) 457
HhaI GCGC 1 cut(s) 788
Hin1II CATG 3 cut(s) 18, 98, 248
Hin6I GCGC 1 cut(s) 786
HinP1I GCGC 1 cut(s) 786
HindIII AAGCTT 2 cut(s) 71, 239
HinfI GANTC 5 cut(s) 52, 548, 572, 845, 876
HphI GGTGA 3 cut(s) 16, 80, 110
Hpy188I TCNGA 4 cut(s) 579, 655, 712, 887
Hpy188III TCNNGA 3 cut(s) 56, 215, 337
Hpy99I CGWCG 3 cut(s) 473, 542, 569
HpyAV CCTTC 2 cut(s) 23, 95
HpyCH4III ACNGT 3 cut(s) 538, 662, 727
HpyCH4IV ACGT 1 cut(s) 567
HpyCH4V TGCA 3 cut(s) 21, 368, 830
HpyF10VI GCNNNNNNNGC 4 cut(s) 275, 349, 474, 783
HpyF3I CTNAG 1 cut(s) 57
HpySE526I ACGT 1 cut(s) 567
Hsp92II CATG 3 cut(s) 18, 98, 248
HspAI GCGC 1 cut(s) 786
Ksp22I TGATCA 1 cut(s) 621
Kzo9I GATC 5 cut(s) 64, 384, 516, 621, 705
LmnI GCTCC 1 cut(s) 44
LweI GCATC 4 cut(s) 355, 369, 769, 817
MaeI CTAG 2 cut(s) 282, 453
MaeII ACGT 1 cut(s) 567
MaeIII GTNAC 1 cut(s) 257
MalI GATC 5 cut(s) 66, 386, 518, 623, 707
MboI GATC 5 cut(s) 64, 384, 516, 621, 705
MflI RGATCY 1 cut(s) 705
MluCI AATT 7 cut(s) 175, 388, 491, 677, 686, 733, 802
MlyI GAGTC 2 cut(s) 46, 885
MmeI TCCRAC 3 cut(s) 602, 678, 853
MnlI CCTC 4 cut(s) 52, 194, 592, 805
MseI TTAA 8 cut(s) 182, 195, 252, 462, 494, 693, 755, 767
MslI CAYNNNNRTG 1 cut(s) 93
MspCI CTTAAG 2 cut(s) 181, 251
MspR9I CCNGG 3 cut(s) 500, 514, 850
MvaI CCWGG 1 cut(s) 850
MvnI CGCG 2 cut(s) 468, 485
MwoI GCNNNNNNNGC 4 cut(s) 275, 349, 474, 783
NciI CCSGG 2 cut(s) 500, 514
NdeII GATC 5 cut(s) 64, 384, 516, 621, 705
NlaIII CATG 3 cut(s) 18, 98, 248
NlaIV GGNNCC 1 cut(s) 448
NspV TTCGAA 1 cut(s) 411
PfeI GAWTC 3 cut(s) 548, 572, 845
PfoI TCCNGGA 1 cut(s) 848
PinAI ACCGGT 3 cut(s) 395, 404, 430
PkrI GCNGC 2 cut(s) 271, 607
PleI GAGTC 2 cut(s) 46, 884
PpsI GAGTC 2 cut(s) 46, 884
Psp6I CCWGG 1 cut(s) 848
PspGI CCWGG 1 cut(s) 848
PspN4I GGNNCC 1 cut(s) 448
PspPI GGNCC 1 cut(s) 267
PsuI RGATCY 1 cut(s) 705
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
RseI CAYNNNNRTG 1 cut(s) 93
SaqAI TTAA 8 cut(s) 182, 195, 252, 462, 494, 693, 755, 767
SatI GCNGC 2 cut(s) 270, 606
Sau3AI GATC 5 cut(s) 64, 384, 516, 621, 705
Sau96I GGNCC 1 cut(s) 267
SchI GAGTC 2 cut(s) 46, 885
ScrFI CCNGG 3 cut(s) 500, 514, 850
SfaNI GCATC 4 cut(s) 355, 369, 769, 817
SfuI TTCGAA 1 cut(s) 411
SmiMI CAYNNNNRTG 1 cut(s) 93
SmlI CTYRAG 3 cut(s) 181, 251, 335
SmoI CTYRAG 3 cut(s) 181, 251, 335
Sse9I AATT 7 cut(s) 175, 388, 491, 677, 686, 733, 802
SsiI CCGC 7 cut(s) 270, 290, 343, 450, 466, 485, 605
SspMI CTAG 2 cut(s) 282, 453
StyD4I CCNGG 3 cut(s) 498, 512, 848
TaaI ACNGT 3 cut(s) 538, 662, 727
TaiI ACGT 1 cut(s) 570
TaqI TCGA 3 cut(s) 363, 411, 729
TasI AATT 7 cut(s) 175, 388, 491, 677, 686, 733, 802
TauI GCSGC 2 cut(s) 272, 608
TfiI GAWTC 3 cut(s) 548, 572, 845
Tru1I TTAA 8 cut(s) 182, 195, 252, 462, 494, 693, 755, 767
Tru9I TTAA 8 cut(s) 182, 195, 252, 462, 494, 693, 755, 767
TscAI CASTG 2 cut(s) 529, 676
TspDTI ATGAA 5 cut(s) 233, 429, 690, 714, 829
TspRI CASTG 2 cut(s) 529, 676
Vha464I CTTAAG 2 cut(s) 181, 251
XapI RAATTY 3 cut(s) 677, 686, 802
XspI CTAG 2 cut(s) 282, 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.