AT5G62120
MYB Family

transcription, DNA-templated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
N/A
Physical Location & Seq
Reverse (-)
24946955 .. 24948225
1271 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G62120.1

Sequence Viewer

Length: 438 bp
ATGACAGCAAAAGATTCGTCAGAACCAGTTACTACGCTTACTCAATTCAACAATATAGATGTTGTAATCACCGATTACCATATGCCTGGTTTGAATGGTGTTCAGCTAAAAAAGAGAATTGATGAAGAATTTGGGAATTTGCCTGTTATTGATCTATACAGGAACATTGAGCACGAGGAGTTGTTTCGTCGAGCTCTTTGTTTCATGCATAAACCAATCTCACGTCGTGATCTCAACAGCCTCAACGTTGTATGTCAACAAGCTCTCCGCCATAGAATGAACGGAGAAACCAATTTAAATGGTTCGGGACAAAATGTGACCGACGATCCAGATGATTGGCTACGGCTTCGAGAAAAGCCTAAGCTCAAATGGACAAAACCTCTTCAGCATAGATTCATGAGCGCTCTTAAAAGCCTTGGTGTCGCTAGTAAGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Myb_DNA-binding Response_reg

Protein Analysis

145

Amino Acids

16.81

Weight (kDa)

8.95

Isoelectric Point (pI)

52.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 6 - 78 1.6e-07 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 268
AclI AACGTT 1 cut(s) 246
AclWI GGATC 1 cut(s) 320
AcsI RAATTY 2 cut(s) 128, 136
AcuI CTGAAG 1 cut(s) 368
AdeI CACNNNGTG 1 cut(s) 227
AfeI AGCGCT 1 cut(s) 403
AgsI TTSAA 2 cut(s) 49, 94
AjiI CACGTC 1 cut(s) 224
AjnI CCWGG 1 cut(s) 85
AluBI AGCT 4 cut(s) 106, 194, 263, 364
AluI AGCT 4 cut(s) 106, 194, 263, 364
Alw21I GWGCWC 2 cut(s) 174, 196
AlwI GGATC 1 cut(s) 320
Aor51HI AGCGCT 1 cut(s) 403
ApoI RAATTY 2 cut(s) 128, 136
ArsI GACNNNNNNTTYG 1 cut(s) 34
AspLEI GCGC 1 cut(s) 404
AsuHPI GGTGA 1 cut(s) 61
BanII GRGCYC 1 cut(s) 196
BauI CACGAG 1 cut(s) 173
Bbv12I GWGCWC 2 cut(s) 174, 196
BceAI ACGGC 1 cut(s) 359
BcgI CGANNNNNNTGC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 87
BfaI CTAG 1 cut(s) 426
BfoI RGCGCY 1 cut(s) 405
Bme1390I CCNGG 1 cut(s) 87
BmgBI CACGTC 1 cut(s) 224
BmrFI CCNGG 1 cut(s) 87
Bpu10I CCTNAGC 1 cut(s) 360
BsaJI CCNNGG 1 cut(s) 415
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bse1I ACTGG 1 cut(s) 26
BseBI CCWGG 1 cut(s) 87
BseDI CCNNGG 1 cut(s) 415
BseNI ACTGG 1 cut(s) 26
BseRI GAGGAG 1 cut(s) 191
BsiHKAI GWGCWC 2 cut(s) 174, 196
BslFI GGGAC 1 cut(s) 321
BsmFI GGGAC 1 cut(s) 321
Bsp1286I GDGCHC 2 cut(s) 174, 196
Bsp143I GATC 3 cut(s) 151, 229, 325
BspACI CCGC 1 cut(s) 268
BspHI TCATGA 1 cut(s) 396
BspPI GGATC 1 cut(s) 320
BsrI ACTGG 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 415
BssMI GATC 3 cut(s) 151, 229, 325
BssSI CACGAG 1 cut(s) 173
BssT1I CCWWGG 1 cut(s) 415
Bst2BI CACGAG 1 cut(s) 173
Bst2UI CCWGG 1 cut(s) 87
Bst6I CTCTTC 1 cut(s) 387
BstDEI CTNAG 1 cut(s) 360
BstH2I RGCGCY 1 cut(s) 405
BstHHI GCGC 1 cut(s) 404
BstKTI GATC 3 cut(s) 154, 232, 328
BstMBI GATC 3 cut(s) 151, 229, 325
BstNI CCWGG 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 85
BstXI CCANNNNNNTGG 2 cut(s) 86, 336
BtrI CACGTC 1 cut(s) 224
CciI TCATGA 1 cut(s) 396
CfoI GCGC 1 cut(s) 404
CviAII CATG 2 cut(s) 205, 397
CviJI RGCY 9 cut(s) 106, 194, 240, 263, 340, 346, 358, 364, 414
CviKI_1 RGCY 9 cut(s) 106, 194, 240, 263, 340, 346, 358, 364, 414
DdeI CTNAG 1 cut(s) 360
DpnI GATC 3 cut(s) 153, 231, 327
DpnII GATC 3 cut(s) 151, 229, 325
DraI TTTAAA 1 cut(s) 297
DraIII CACNNNGTG 1 cut(s) 227
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
EciI GGCGGA 1 cut(s) 257
Ecl136II GAGCTC 1 cut(s) 194
Eco130I CCWWGG 1 cut(s) 415
Eco24I GRGCYC 1 cut(s) 196
Eco47III AGCGCT 1 cut(s) 403
Eco53kI GAGCTC 1 cut(s) 194
Eco57I CTGAAG 1 cut(s) 368
EcoICRI GAGCTC 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 85
EcoT14I CCWWGG 1 cut(s) 415
EcoT22I ATGCAT 1 cut(s) 210
EcoT38I GRGCYC 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 415
FaeI CATG 2 cut(s) 208, 400
FaqI GGGAC 1 cut(s) 321
FatI CATG 2 cut(s) 204, 396
FauNDI CATATG 1 cut(s) 81
FriOI GRGCYC 1 cut(s) 196
FspBI CTAG 1 cut(s) 426
GlaI GCGC 1 cut(s) 403
HaeII RGCGCY 1 cut(s) 405
HhaI GCGC 1 cut(s) 404
Hin1II CATG 2 cut(s) 208, 400
Hin6I GCGC 1 cut(s) 402
HinP1I GCGC 1 cut(s) 402
HincII GTYRAC 1 cut(s) 257
HindII GTYRAC 1 cut(s) 257
HinfI GANTC 2 cut(s) 14, 393
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 257
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 5 cut(s) 227, 306, 329, 350, 397
Hpy8I GTNNAC 1 cut(s) 257
Hpy99I CGWCG 3 cut(s) 192, 228, 326
HpyCH4IV ACGT 2 cut(s) 223, 246
HpyCH4V TGCA 1 cut(s) 208
HpyF3I CTNAG 1 cut(s) 360
HpySE526I ACGT 2 cut(s) 223, 246
Hsp92II CATG 2 cut(s) 208, 400
HspAI GCGC 1 cut(s) 402
Kzo9I GATC 3 cut(s) 151, 229, 325
LpnPI CCDG 6 cut(s) 39, 72, 99, 145, 156, 342
MaeI CTAG 1 cut(s) 426
MaeII ACGT 2 cut(s) 223, 246
MaeIII GTNAC 2 cut(s) 28, 316
MalI GATC 3 cut(s) 153, 231, 327
MboI GATC 3 cut(s) 151, 229, 325
MboII GAAGA 2 cut(s) 137, 374
MhlI GDGCHC 2 cut(s) 174, 196
MluCI AATT 5 cut(s) 44, 117, 128, 136, 292
MnlI CCTC 3 cut(s) 169, 251, 390
Mph1103I ATGCAT 1 cut(s) 210
MseI TTAA 3 cut(s) 296, 408, 436
MspR9I CCNGG 1 cut(s) 87
MvaI CCWGG 1 cut(s) 87
NdeI CATATG 1 cut(s) 81
NdeII GATC 3 cut(s) 151, 229, 325
NlaIII CATG 2 cut(s) 208, 400
NmuCI GTSAC 1 cut(s) 316
NsiI ATGCAT 1 cut(s) 210
PagI TCATGA 1 cut(s) 396
PfeI GAWTC 2 cut(s) 14, 393
Psp124BI GAGCTC 1 cut(s) 196
Psp1406I AACGTT 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 85
PspGI CCWGG 1 cut(s) 85
SacI GAGCTC 1 cut(s) 196
SaqAI TTAA 3 cut(s) 296, 408, 436
Sau3AI GATC 3 cut(s) 151, 229, 325
ScrFI CCNGG 1 cut(s) 87
SduI GDGCHC 2 cut(s) 174, 196
SetI ASST 7 cut(s) 108, 196, 226, 249, 265, 366, 382
SmiI ATTTAAAT 1 cut(s) 297
Sse9I AATT 5 cut(s) 44, 117, 128, 136, 292
SsiI CCGC 1 cut(s) 268
SspMI CTAG 1 cut(s) 426
SstI GAGCTC 1 cut(s) 196
StyD4I CCNGG 1 cut(s) 85
StyI CCWWGG 1 cut(s) 415
SwaI ATTTAAAT 1 cut(s) 297
TaiI ACGT 2 cut(s) 226, 249
TaqI TCGA 2 cut(s) 190, 349
TaqII GACCGA 1 cut(s) 335
TasI AATT 5 cut(s) 44, 117, 128, 136, 292
TfiI GAWTC 2 cut(s) 14, 393
Tru1I TTAA 3 cut(s) 296, 408, 436
Tru9I TTAA 3 cut(s) 296, 408, 436
TseFI GTSAC 1 cut(s) 316
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 4 cut(s) 138, 193, 293, 385
TspGWI ACGGA 1 cut(s) 297
XapI RAATTY 2 cut(s) 128, 136
XspI CTAG 1 cut(s) 426
Zsp2I ATGCAT 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.