AT5G62320
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
N/A
Physical Location & Seq
Reverse (-)
25028716 .. 25029933
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G62320.1

Sequence Viewer

Length: 738 bp
ATGGGTGGTCGTAAACCATGTTGTGATGAGGTTGGATTAAGAAAGGGTCCATGGACAGTGGAAGAAGATGGGAAACTAGTTGATTTCTTAAGGGCACGTGGCAACTGCGGTGGTGGTGGAGGAGGATGGTGCTGGAGAGACGTGCCAAAACTGGCGGGGCTAAGGAGGTGTGGCAAAAGTTGCCGTCTCCGGTGGACTAATTATCTCCGGCCAGATCTCAAGAGAGGTCTTTTTACTGAAGAAGAAATCCAACTAGTCATTGATCTTCATGCTCGCCTTGGCAATAGATGGTCGAAGATTGCAGTGGAGTTACCAGGAAGAACAGACAACGATATCAAAAATTATTGGAACACTCATATAAAGAGGAAGCTTATAAGAATGGGTATTGATCCAAACACACATCGTCGATTTGACCAACAAAAAGTCAACGAGGAGGAAACGATATTGGTCAACGATCCAAAGCCTCTGTCTGAGACCGAGGTATCTGTTGCTTTGAAGAATGACACGTCAGCAGTGTTATCAGGAAATCTAAACCAATTGGCTGACGTGGACGGTGATGATCAGCCGTGGAGCTTTCTAATGGAAAATGACGAAGGAGGAGGTGGCGACGCCGCCGGAGAGCTTACGATGCTATTGTCCGGTGACATTACGTCATCATGTTCTTCTTCGTCATCTTTGTGGATGAAGTATGGAGAATTCGGATACGAAGATTTAGAACTTGGATGTTTCGATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

245

Amino Acids

27.36

Weight (kDa)

5.17

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 15 - 69 4.4e-12 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 18 - 84 1.3e-08 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 75 - 119 3e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 78 - 124 1.9e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 374
AciI CCGC 3 cut(s) 108, 155, 612
AclWI GGATC 2 cut(s) 383, 449
AcoI YGGCCR 1 cut(s) 209
AcsI RAATTY 1 cut(s) 695
AcuI CTGAAG 1 cut(s) 258
AcvI CACGTG 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 609
AflII CTTAAG 1 cut(s) 88
AflIII ACRYGT 1 cut(s) 504
AgsI TTSAA 1 cut(s) 496
AhdI GACNNNNNGTC 1 cut(s) 649
AhlI ACTAGT 2 cut(s) 76, 253
AjiI CACGTC 3 cut(s) 142, 507, 547
AjnI CCWGG 1 cut(s) 313
AluBI AGCT 3 cut(s) 370, 573, 622
AluI AGCT 3 cut(s) 370, 573, 622
Alw26I GTCTC 3 cut(s) 132, 191, 467
AlwI GGATC 2 cut(s) 383, 449
AoxI GGCC 1 cut(s) 209
ApoI RAATTY 1 cut(s) 695
ArsI GACNNNNNNTTYG 2 cut(s) 452, 484
AspS9I GGNCC 1 cut(s) 47
AsuHPI GGTGA 2 cut(s) 566, 653
AvaII GGWCC 1 cut(s) 47
BaeGI GKGCMC 1 cut(s) 97
BaeI ACNNNNGTAYC 2 cut(s) 465, 498
BbrPI CACGTG 1 cut(s) 98
BccI CCATC 3 cut(s) 62, 120, 282
BceAI ACGGC 2 cut(s) 168, 550
BciT130I CCWGG 1 cut(s) 315
BciVI GTATCC 1 cut(s) 695
BclI TGATCA 1 cut(s) 559
BcoDI GTCTC 3 cut(s) 132, 191, 467
BcuI ACTAGT 2 cut(s) 76, 253
BfaI CTAG 2 cut(s) 77, 254
BfrI CTTAAG 1 cut(s) 88
BfuI GTATCC 1 cut(s) 695
BglII AGATCT 1 cut(s) 214
BisI GCNGC 1 cut(s) 612
BlsI GCNGC 1 cut(s) 613
Bme1390I CCNGG 1 cut(s) 315
Bme18I GGWCC 1 cut(s) 47
BmeRI GACNNNNNGTC 1 cut(s) 649
BmgBI CACGTC 3 cut(s) 142, 507, 547
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 315
BmsI GCATC 1 cut(s) 618
BpmI CTGGAG 1 cut(s) 154
Bpu10I CCTNAGC 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 203
BsaAI YACGTR 1 cut(s) 98
BsaHI GRCGYC 1 cut(s) 609
BsaI GGTCTC 1 cut(s) 467
BsaJI CCNNGG 4 cut(s) 50, 277, 477, 566
BsaWI WCCGGW 2 cut(s) 189, 638
Bse1I ACTGG 1 cut(s) 156
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 4 cut(s) 50, 277, 477, 566
BseGI GGATG 3 cut(s) 131, 687, 728
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 1 cut(s) 156
BseRI GAGGAG 3 cut(s) 135, 446, 612
BseSI GKGCMC 1 cut(s) 97
BshFI GGCC 1 cut(s) 211
BsiSI CCGG 4 cut(s) 190, 208, 615, 639
BsmAI GTCTC 3 cut(s) 132, 191, 467
BsmBI CGTCTC 2 cut(s) 132, 191
BsnI GGCC 1 cut(s) 211
Bso31I GGTCTC 1 cut(s) 467
Bsp1286I GDGCHC 1 cut(s) 97
Bsp143I GATC 5 cut(s) 214, 262, 388, 454, 559
Bsp19I CCATGG 1 cut(s) 50
BspACI CCGC 3 cut(s) 108, 155, 612
BspANI GGCC 1 cut(s) 211
BspCNI CTCAG 1 cut(s) 463
BspLI GGNNCC 1 cut(s) 48
BspPI GGATC 2 cut(s) 383, 449
BspTI CTTAAG 1 cut(s) 88
BspTNI GGTCTC 1 cut(s) 467
BsrI ACTGG 1 cut(s) 156
BssECI CCNNGG 4 cut(s) 50, 277, 477, 566
BssMI GATC 5 cut(s) 214, 262, 388, 454, 559
BssNI GRCGYC 1 cut(s) 609
BssT1I CCWWGG 2 cut(s) 50, 277
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 2 cut(s) 58, 554
BstACI GRCGYC 1 cut(s) 609
BstAFI CTTAAG 1 cut(s) 88
BstAPI GCANNNNNTGC 1 cut(s) 180
BstBAI YACGTR 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 274
BstDEI CTNAG 2 cut(s) 161, 471
BstDSI CCRYGG 2 cut(s) 50, 566
BstF5I GGATG 3 cut(s) 131, 687, 728
BstKTI GATC 5 cut(s) 217, 265, 391, 457, 562
BstMAI GTCTC 3 cut(s) 132, 191, 467
BstMBI GATC 5 cut(s) 214, 262, 388, 454, 559
BstMWI GCNNNNNNNGC 2 cut(s) 180, 628
BstNI CCWGG 1 cut(s) 315
BstSCI CCNGG 1 cut(s) 313
BstSLI GKGCMC 1 cut(s) 97
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuI GTATCC 1 cut(s) 695
BsuRI GGCC 1 cut(s) 211
BtgI CCRYGG 2 cut(s) 50, 566
BtrI CACGTC 3 cut(s) 142, 507, 547
BtsCI GGATG 3 cut(s) 131, 687, 728
BtsI GCAGTG 2 cut(s) 309, 519
BtsIMutI CAGTG 3 cut(s) 63, 309, 519
Cac8I GCNNGC 1 cut(s) 274
Cfr13I GGNCC 1 cut(s) 47
CseI GACGC 1 cut(s) 617
CspCI CAANNNNNGTGG 2 cut(s) 91, 126
CviAII CATG 4 cut(s) 18, 51, 269, 657
CviJI RGCY 8 cut(s) 160, 211, 370, 463, 542, 565, 573, 622
CviKI_1 RGCY 8 cut(s) 160, 211, 370, 463, 542, 565, 573, 622
DdeI CTNAG 2 cut(s) 161, 471
DpnI GATC 5 cut(s) 216, 264, 390, 456, 561
DpnII GATC 5 cut(s) 214, 262, 388, 454, 559
DriI GACNNNNNGTC 1 cut(s) 649
EaeI YGGCCR 1 cut(s) 209
Eam1105I GACNNNNNGTC 1 cut(s) 649
Eco130I CCWWGG 2 cut(s) 50, 277
Eco31I GGTCTC 1 cut(s) 467
Eco32I GATATC 1 cut(s) 334
Eco47I GGWCC 1 cut(s) 47
Eco57I CTGAAG 1 cut(s) 258
Eco72I CACGTG 1 cut(s) 98
EcoRI GAATTC 1 cut(s) 695
EcoRII CCWGG 1 cut(s) 313
EcoRV GATATC 1 cut(s) 334
EcoT14I CCWWGG 2 cut(s) 50, 277
ErhI CCWWGG 2 cut(s) 50, 277
Esp3I CGTCTC 2 cut(s) 132, 191
FaeI CATG 4 cut(s) 21, 54, 272, 660
FaiI YATR 8 cut(s) 19, 52, 270, 357, 359, 374, 658, 690
FatI CATG 4 cut(s) 17, 50, 268, 656
FauI CCCGC 1 cut(s) 148
FbaI TGATCA 1 cut(s) 559
Fnu4HI GCNGC 1 cut(s) 612
FokI GGATG 2 cut(s) 138, 694
Fsp4HI GCNGC 1 cut(s) 612
FspBI CTAG 2 cut(s) 77, 254
GluI GCNGC 1 cut(s) 612
GsuI CTGGAG 1 cut(s) 154
HaeIII GGCC 1 cut(s) 211
HapII CCGG 4 cut(s) 190, 208, 615, 639
HgaI GACGC 1 cut(s) 617
Hin1I GRCGYC 1 cut(s) 609
Hin1II CATG 4 cut(s) 21, 54, 272, 660
HincII GTYRAC 2 cut(s) 427, 451
HindII GTYRAC 2 cut(s) 427, 451
HindIII AAGCTT 1 cut(s) 368
HpaII CCGG 4 cut(s) 190, 208, 615, 639
HphI GGTGA 2 cut(s) 566, 653
Hpy166II GTNNAC 5 cut(s) 14, 195, 427, 451, 550
Hpy188I TCNGA 2 cut(s) 472, 701
Hpy188III TCNNGA 2 cut(s) 220, 522
Hpy8I GTNNAC 5 cut(s) 14, 195, 427, 451, 550
Hpy99I CGWCG 2 cut(s) 408, 611
HpyAV CCTTC 1 cut(s) 587
HpyCH4III ACNGT 2 cut(s) 58, 554
HpyCH4IV ACGT 5 cut(s) 97, 141, 506, 546, 650
HpyCH4V TGCA 1 cut(s) 302
HpyF10VI GCNNNNNNNGC 2 cut(s) 180, 628
HpyF3I CTNAG 2 cut(s) 161, 471
HpySE526I ACGT 5 cut(s) 97, 141, 506, 546, 650
Hsp92I GRCGYC 1 cut(s) 609
Hsp92II CATG 4 cut(s) 21, 54, 272, 660
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 5 cut(s) 214, 262, 388, 454, 559
LmnI GCTCC 1 cut(s) 570
LweI GCATC 1 cut(s) 618
MaeI CTAG 2 cut(s) 77, 254
MaeII ACGT 5 cut(s) 97, 141, 506, 546, 650
MaeIII GTNAC 2 cut(s) 309, 641
MalI GATC 5 cut(s) 216, 264, 390, 456, 561
MboI GATC 5 cut(s) 214, 262, 388, 454, 559
MfeI CAATTG 1 cut(s) 536
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 97
MluCI AATT 4 cut(s) 199, 340, 536, 695
MmeI TCCRAC 2 cut(s) 13, 274
MseI TTAA 2 cut(s) 38, 89
MslI CAYNNNNRTG 1 cut(s) 676
MspCI CTTAAG 1 cut(s) 88
MspI CCGG 4 cut(s) 190, 208, 615, 639
MspR9I CCNGG 1 cut(s) 315
MunI CAATTG 1 cut(s) 536
MvaI CCWGG 1 cut(s) 315
MwoI GCNNNNNNNGC 2 cut(s) 180, 628
NcoI CCATGG 1 cut(s) 50
NdeII GATC 5 cut(s) 214, 262, 388, 454, 559
NlaIII CATG 4 cut(s) 21, 54, 272, 660
NlaIV GGNNCC 1 cut(s) 48
NmuCI GTSAC 1 cut(s) 641
PkrI GCNGC 1 cut(s) 613
PmaCI CACGTG 1 cut(s) 98
PmlI CACGTG 1 cut(s) 98
Ppu21I YACGTR 1 cut(s) 98
PsiI TTATAA 1 cut(s) 374
Psp6I CCWGG 1 cut(s) 313
PspCI CACGTG 1 cut(s) 98
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 1 cut(s) 48
PspPI GGNCC 1 cut(s) 47
PsuI RGATCY 1 cut(s) 214
RseI CAYNNNNRTG 1 cut(s) 676
SaqAI TTAA 2 cut(s) 38, 89
SatI GCNGC 1 cut(s) 612
Sau3AI GATC 5 cut(s) 214, 262, 388, 454, 559
Sau96I GGNCC 1 cut(s) 47
ScrFI CCNGG 1 cut(s) 315
SduI GDGCHC 1 cut(s) 97
SfaNI GCATC 1 cut(s) 618
SinI GGWCC 1 cut(s) 47
SmiMI CAYNNNNRTG 1 cut(s) 676
SmlI CTYRAG 2 cut(s) 88, 218
SmoI CTYRAG 2 cut(s) 88, 218
SpeI ACTAGT 2 cut(s) 76, 253
Sse9I AATT 4 cut(s) 199, 340, 536, 695
SsiI CCGC 3 cut(s) 108, 155, 612
SspMI CTAG 2 cut(s) 77, 254
StyD4I CCNGG 1 cut(s) 313
StyI CCWWGG 2 cut(s) 50, 277
TaaI ACNGT 2 cut(s) 58, 554
TaiI ACGT 5 cut(s) 100, 144, 509, 549, 653
TaqI TCGA 3 cut(s) 293, 406, 729
TaqII GACCGA 1 cut(s) 491
TasI AATT 4 cut(s) 199, 340, 536, 695
TauI GCSGC 1 cut(s) 614
Tru1I TTAA 2 cut(s) 38, 89
Tru9I TTAA 2 cut(s) 38, 89
TscAI CASTG 3 cut(s) 63, 309, 519
TseFI GTSAC 1 cut(s) 641
Tsp45I GTSAC 1 cut(s) 641
TspDTI ATGAA 2 cut(s) 257, 698
TspRI CASTG 3 cut(s) 63, 309, 519
Vha464I CTTAAG 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 47
XapI RAATTY 1 cut(s) 695
XspI CTAG 2 cut(s) 77, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.