AT5G64750

Transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
N/A
Physical Location & Seq
Forward (+)
25891449 .. 25893888
2440 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G64750.1

Sequence Viewer

Length: 1176 bp
ATGTGTGTCTTAAAAGTGGCAAATCAGGAAGATAACGTTGGCAAAAAAGCCGAGTCTATTAGAGACGATGATCATCGGACGTTATCTGAAATCGATCAATGGCTTTACTTATTCGCAGCCGAAGACGACCACCACCGTCATAGCTTCCCTACGCAGCAGCCGCCTCCATCGTCGTCGTCCTCATCTCTTATCTCAGGTTTCAGTAGAGAGATGGAGATGTCTGCTATTGTCTCTGCTTTGACTCACGTTGTTGCTGGAAATGTTCCTCAGCATCAACAAGGAGGCGGTGAAGGTAGCGGAGAAGGGACTTCGAATTCGTCTTCTTCCTCGGGGCAGAAAAGGAGGAGAGAGGTGGAGGAAGGTGGCGCCAAAGCGGTTAAGGCAGCTAATACTTTGACGGTTGATCAATATTTCTCCGGTGGTAGCTCTACTTCTAAAGTGAGAGAAGCTTCGAGTAACATGTCAGGTCCGGGCCCAACATACGAGTATACAACTACGGCAACTGCTAGTAGCGAAACGTCGTCGTTTAGTGGGGACCAACCTCGGCGAAGATACAGAGGAGTTAGACAAAGACCATGGGGAAAGTGGGCGGCTGAGATTCGAGATCCATTTAAAGCAGCTAGAGTTTGGCTCGGTACGTTCGACAATGCTGAATCAGCAGCAAGAGCTTACGACGAAGCTGCACTTCGGTTTAGAGGCAACAAAGCCAAACTCAACTTCCCTGAAAACGTCAAACTCGTTAGACCTGCTTCAACCGAAGCACAACCTGTGCACCAAACCGCTGCTCAAAGACCGACCCAGTCAAGGAACTCGGGTTCAACGACTACCCTTTTGCCCATAAGACCTGCTTCGAATCAAAGCGTTCATTCGCAGCCGTTGATGCAATCATACAACTTGAGTTACTCTGAAATGGCTCGTCAACAACAACAGTTTCAGCAACATCATCAACAATCTTTGGATTTATACGATCAAATGTCGTTTCCGTTGCGTTTCGGTCACACTGGAGGTTCAATGATGCAATCTACGTCGTCATCATCATCTCATTCTCGTCCTCTGTTTTCCCCGGCTGCTGTTCAGCCGCCACCAGAATCAGCTAGCGAAACCGGTTATCTCCAGGATATACAATGGCCATCAGACAAGACTAGTAATAACTACAATAATAGTCCATCCTCCTGA

Protein Analysis

391

Amino Acids

42.81

Weight (kDa)

7.9

Isoelectric Point (pI)

62.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 184 - 233 1.9e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 754, 853
AccB1I GGYRCC 1 cut(s) 365
AccI GTMKAC 1 cut(s) 488
AciI CCGC 7 cut(s) 161, 285, 297, 374, 590, 780, 1079
AclI AACGTT 1 cut(s) 36
AclWI GGATC 1 cut(s) 599
AcoI YGGCCR 1 cut(s) 1127
AcsI RAATTY 1 cut(s) 313
AcyI GRCGYC 1 cut(s) 366
AfaI GTAC 1 cut(s) 637
AfiI CCNNNNNNNGG 1 cut(s) 804
AflIII ACRYGT 1 cut(s) 459
AgeI ACCGGT 1 cut(s) 1103
AgsI TTSAA 3 cut(s) 753, 819, 1011
AhlI ACTAGT 1 cut(s) 1142
AjnI CCWGG 1 cut(s) 1113
AjuI GAANNNNNNNTTGG 4 cut(s) 21, 53, 701, 733
AloI GAACNNNNNNTCC 2 cut(s) 799, 831
AluBI AGCT 8 cut(s) 144, 386, 426, 449, 620, 668, 680, 1094
AluI AGCT 8 cut(s) 144, 386, 426, 449, 620, 668, 680, 1094
Alw21I GWGCWC 1 cut(s) 774
Alw26I GTCTC 2 cut(s) 57, 235
Alw44I GTGCAC 1 cut(s) 770
AlwI GGATC 1 cut(s) 599
Ama87I CYCGRG 2 cut(s) 328, 811
AoxI GGCC 2 cut(s) 472, 1127
ApaI GGGCCC 1 cut(s) 476
ApaLI GTGCAC 1 cut(s) 770
ApoI RAATTY 1 cut(s) 313
ArsI GACNNNNNNTTYG 4 cut(s) 298, 330, 814, 846
AsiGI ACCGGT 1 cut(s) 1103
AspLEI GCGC 1 cut(s) 368
AspS9I GGNCC 4 cut(s) 467, 472, 473, 535
AsuC2I CCSGG 2 cut(s) 471, 1064
AsuHPI GGTGA 1 cut(s) 299
AsuII TTCGAA 2 cut(s) 311, 851
AsuNHI GCTAGC 1 cut(s) 1094
AvaI CYCGRG 2 cut(s) 328, 811
AvaII GGWCC 2 cut(s) 467, 535
BaeGI GKGCMC 2 cut(s) 476, 774
BalI TGGCCA 1 cut(s) 1129
BanI GGYRCC 1 cut(s) 365
BanII GRGCYC 1 cut(s) 476
BarI GAAGNNNNNNTAC 2 cut(s) 415, 447
BbsI GAAGAC 2 cut(s) 129, 312
Bbv12I GWGCWC 1 cut(s) 774
BbvCI CCTCAGC 1 cut(s) 267
BccI CCATC 4 cut(s) 175, 205, 1138, 1174
BceAI ACGGC 2 cut(s) 513, 859
BcgI CGANNNNNNTGC 2 cut(s) 662, 696
BciT130I CCWGG 1 cut(s) 1115
BclI TGATCA 2 cut(s) 70, 403
BcnI CCSGG 2 cut(s) 471, 1064
BcoDI GTCTC 2 cut(s) 57, 235
BcuI ACTAGT 1 cut(s) 1142
BfaI CTAG 4 cut(s) 507, 621, 1095, 1143
BfoI RGCGCY 1 cut(s) 369
BfuAI ACCTGC 2 cut(s) 754, 853
Bme1390I CCNGG 3 cut(s) 471, 1064, 1115
Bme18I GGWCC 2 cut(s) 467, 535
BmeT110I CYCGRG 2 cut(s) 328, 811
BmgT120I GGNCC 4 cut(s) 467, 472, 473, 535
BmiI GGNNCC 3 cut(s) 367, 474, 536
BmrFI CCNGG 3 cut(s) 471, 1064, 1115
BmrI ACTGGG 1 cut(s) 793
BmsI GCATC 3 cut(s) 280, 870, 1005
BmtI GCTAGC 1 cut(s) 1098
BmuI ACTGGG 1 cut(s) 793
BpiI GAAGAC 2 cut(s) 129, 312
BplI GAGNNNNNCTC 2 cut(s) 615, 647
BpmI CTGGAG 2 cut(s) 1023, 1097
Bpu10I CCTNAGC 1 cut(s) 267
Bpu14I TTCGAA 2 cut(s) 311, 851
BpuEI CTTGAG 1 cut(s) 916
BpuMI CCSGG 2 cut(s) 471, 1064
Bsa29I ATCGAT 1 cut(s) 93
BsaBI GATNNNNATC 1 cut(s) 72
BsaHI GRCGYC 1 cut(s) 366
BsaJI CCNNGG 4 cut(s) 327, 542, 575, 1062
BsaWI WCCGGW 2 cut(s) 416, 1103
Bsc4I CCNNNNNNNGG 1 cut(s) 804
Bse118I RCCGGY 1 cut(s) 1103
Bse1I ACTGG 2 cut(s) 799, 1006
Bse8I GATNNNNATC 1 cut(s) 72
BseBI CCWGG 1 cut(s) 1115
BseCI ATCGAT 1 cut(s) 93
BseDI CCNNGG 4 cut(s) 327, 542, 575, 1062
BseGI GGATG 1 cut(s) 1166
BseJI GATNNNNATC 1 cut(s) 72
BseLI CCNNNNNNNGG 1 cut(s) 804
BseMII CTCAG 3 cut(s) 207, 281, 585
BseNI ACTGG 2 cut(s) 799, 1006
BseRI GAGGAG 2 cut(s) 358, 573
BseSI GKGCMC 2 cut(s) 476, 774
BsgI GTGCAG 1 cut(s) 666
BshFI GGCC 2 cut(s) 474, 1129
BshNI GGYRCC 1 cut(s) 365
BshTI ACCGGT 1 cut(s) 1103
BshVI ATCGAT 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 774
BsiHKCI CYCGRG 2 cut(s) 328, 811
BsiSI CCGG 4 cut(s) 417, 470, 1064, 1104
BslFI GGGAC 2 cut(s) 319, 548
BslI CCNNNNNNNGG 1 cut(s) 804
BsmAI GTCTC 2 cut(s) 57, 235
BsmBI CGTCTC 1 cut(s) 57
BsmFI GGGAC 2 cut(s) 319, 548
BsnI GGCC 2 cut(s) 474, 1129
BsoBI CYCGRG 2 cut(s) 328, 811
Bsp119I TTCGAA 2 cut(s) 311, 851
Bsp120I GGGCCC 1 cut(s) 472
Bsp1286I GDGCHC 2 cut(s) 476, 774
Bsp143I GATC 5 cut(s) 70, 94, 403, 604, 967
Bsp19I CCATGG 1 cut(s) 575
BspACI CCGC 7 cut(s) 161, 285, 297, 374, 590, 780, 1079
BspANI GGCC 2 cut(s) 474, 1129
BspCNI CTCAG 3 cut(s) 206, 280, 586
BspDI ATCGAT 1 cut(s) 93
BspLI GGNNCC 3 cut(s) 367, 474, 536
BspMI ACCTGC 2 cut(s) 754, 853
BspOI GCTAGC 1 cut(s) 1098
BspPI GGATC 1 cut(s) 599
BspT104I TTCGAA 2 cut(s) 311, 851
BspT107I GGYRCC 1 cut(s) 365
BsrFI RCCGGY 1 cut(s) 1103
BsrI ACTGG 2 cut(s) 799, 1006
BssAI RCCGGY 1 cut(s) 1103
BssECI CCNNGG 4 cut(s) 327, 542, 575, 1062
BssMI GATC 5 cut(s) 70, 94, 403, 604, 967
BssNAI GTATAC 1 cut(s) 489
BssNI GRCGYC 1 cut(s) 366
BssT1I CCWWGG 1 cut(s) 575
Bst1107I GTATAC 1 cut(s) 489
Bst2UI CCWGG 1 cut(s) 1115
Bst4CI ACNGT 3 cut(s) 137, 400, 930
BstACI GRCGYC 1 cut(s) 366
BstBI TTCGAA 2 cut(s) 311, 851
BstC8I GCNNGC 1 cut(s) 1096
BstDEI CTNAG 3 cut(s) 193, 267, 594
BstDSI CCRYGG 1 cut(s) 575
BstF5I GGATG 1 cut(s) 1166
BstH2I RGCGCY 1 cut(s) 369
BstHHI GCGC 1 cut(s) 368
BstKTI GATC 5 cut(s) 73, 97, 406, 607, 970
BstMAI GTCTC 2 cut(s) 57, 235
BstMBI GATC 5 cut(s) 70, 94, 403, 604, 967
BstMWI GCNNNNNNNGC 5 cut(s) 160, 380, 656, 665, 880
BstNI CCWGG 1 cut(s) 1115
BstNSI RCATGY 1 cut(s) 463
BstSCI CCNGG 3 cut(s) 469, 1062, 1113
BstSLI GKGCMC 2 cut(s) 476, 774
BstV2I GAAGAC 2 cut(s) 129, 312
BstX2I RGATCY 1 cut(s) 604
BstYI RGATCY 1 cut(s) 604
BstZ17I GTATAC 1 cut(s) 489
Bsu15I ATCGAT 1 cut(s) 93
BsuRI GGCC 2 cut(s) 474, 1129
BsuTUI ATCGAT 1 cut(s) 93
BtgI CCRYGG 1 cut(s) 575
BtsCI GGATG 1 cut(s) 1166
BtsIMutI CAGTG 1 cut(s) 999
BveI ACCTGC 2 cut(s) 754, 853
Cac8I GCNNGC 1 cut(s) 1096
CfoI GCGC 1 cut(s) 368
Cfr10I RCCGGY 1 cut(s) 1103
Cfr13I GGNCC 4 cut(s) 467, 472, 473, 535
ClaI ATCGAT 1 cut(s) 93
Csp6I GTAC 1 cut(s) 636
CspAI ACCGGT 1 cut(s) 1103
CviAII CATG 2 cut(s) 460, 576
CviQI GTAC 1 cut(s) 636
DdeI CTNAG 3 cut(s) 193, 267, 594
DinI GGCGCC 1 cut(s) 367
DpnI GATC 5 cut(s) 72, 96, 405, 606, 969
DpnII GATC 5 cut(s) 70, 94, 403, 604, 967
DraI TTTAAA 1 cut(s) 613
EaeI YGGCCR 1 cut(s) 1127
Eco130I CCWWGG 1 cut(s) 575
Eco24I GRGCYC 1 cut(s) 476
Eco47I GGWCC 2 cut(s) 467, 535
Eco88I CYCGRG 2 cut(s) 328, 811
EcoRI GAATTC 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 1113
EcoT14I CCWWGG 1 cut(s) 575
EcoT38I GRGCYC 1 cut(s) 476
EgeI GGCGCC 1 cut(s) 367
EheI GGCGCC 1 cut(s) 367
ErhI CCWWGG 1 cut(s) 575
Esp3I CGTCTC 1 cut(s) 57
FaeI CATG 2 cut(s) 463, 579
FaiI YATR 9 cut(s) 141, 461, 481, 489, 577, 839, 889, 964, 1121
FalI AAGNNNNNCTT 4 cut(s) 669, 701, 832, 864
FaqI GGGAC 2 cut(s) 319, 548
FatI CATG 2 cut(s) 459, 575
FbaI TGATCA 2 cut(s) 70, 403
FblI GTMKAC 1 cut(s) 488
FokI GGATG 1 cut(s) 1153
FriOI GRGCYC 1 cut(s) 476
FspBI CTAG 4 cut(s) 507, 621, 1095, 1143
GlaI GCGC 1 cut(s) 367
GsuI CTGGAG 2 cut(s) 1023, 1097
HaeII RGCGCY 1 cut(s) 369
HaeIII GGCC 2 cut(s) 474, 1129
HapII CCGG 4 cut(s) 417, 470, 1064, 1104
HhaI GCGC 1 cut(s) 368
Hin1I GRCGYC 1 cut(s) 366
Hin1II CATG 2 cut(s) 463, 579
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HincII GTYRAC 1 cut(s) 920
HindII GTYRAC 1 cut(s) 920
HindIII AAGCTT 1 cut(s) 447
HinfI GANTC 6 cut(s) 53, 241, 598, 653, 853, 1088
HpaII CCGG 4 cut(s) 417, 470, 1064, 1104
HphI GGTGA 1 cut(s) 299
Hpy166II GTNNAC 3 cut(s) 489, 772, 920
Hpy188I TCNGA 4 cut(s) 78, 88, 907, 1135
Hpy188III TCNNGA 3 cut(s) 26, 602, 1173
Hpy8I GTNNAC 3 cut(s) 489, 772, 920
Hpy99I CGWCG 6 cut(s) 175, 178, 523, 526, 677, 1030
HpyAV CCTTC 3 cut(s) 284, 296, 353
HpyCH4III ACNGT 3 cut(s) 137, 400, 930
HpyCH4IV ACGT 7 cut(s) 36, 80, 246, 518, 638, 729, 1025
HpyCH4V TGCA 4 cut(s) 683, 772, 883, 1018
HpyF10VI GCNNNNNNNGC 5 cut(s) 160, 380, 656, 665, 880
HpyF3I CTNAG 3 cut(s) 193, 267, 594
HpySE526I ACGT 7 cut(s) 36, 80, 246, 518, 638, 729, 1025
Hsp92I GRCGYC 1 cut(s) 366
Hsp92II CATG 2 cut(s) 463, 579
HspAI GCGC 1 cut(s) 366
KasI GGCGCC 1 cut(s) 365
Ksp22I TGATCA 2 cut(s) 70, 403
Kzo9I GATC 5 cut(s) 70, 94, 403, 604, 967
LweI GCATC 3 cut(s) 280, 870, 1005
MaeI CTAG 4 cut(s) 507, 621, 1095, 1143
MaeII ACGT 7 cut(s) 36, 80, 246, 518, 638, 729, 1025
MaeIII GTNAC 3 cut(s) 455, 899, 995
MalI GATC 5 cut(s) 72, 96, 405, 606, 969
MboI GATC 5 cut(s) 70, 94, 403, 604, 967
MboII GAAGA 5 cut(s) 41, 134, 312, 315, 561
MflI RGATCY 1 cut(s) 604
MhlI GDGCHC 2 cut(s) 476, 774
MlsI TGGCCA 1 cut(s) 1129
MluCI AATT 1 cut(s) 313
MluNI TGGCCA 1 cut(s) 1129
Mly113I GGCGCC 1 cut(s) 366
MlyI GAGTC 2 cut(s) 62, 235
Mox20I TGGCCA 1 cut(s) 1129
MscI TGGCCA 1 cut(s) 1129
MseI TTAA 3 cut(s) 11, 378, 612
Msp20I TGGCCA 1 cut(s) 1129
MspA1I CMGCKG 1 cut(s) 782
MspI CCGG 4 cut(s) 417, 470, 1064, 1104
MspR9I CCNGG 3 cut(s) 471, 1064, 1115
MvaI CCWGG 1 cut(s) 1115
MwoI GCNNNNNNNGC 5 cut(s) 160, 380, 656, 665, 880
NarI GGCGCC 1 cut(s) 366
NciI CCSGG 2 cut(s) 471, 1064
NcoI CCATGG 1 cut(s) 575
NdeII GATC 5 cut(s) 70, 94, 403, 604, 967
NheI GCTAGC 1 cut(s) 1094
NlaIII CATG 2 cut(s) 463, 579
NlaIV GGNNCC 3 cut(s) 367, 474, 536
NmeAIII GCCGAG 2 cut(s) 76, 523
NmuCI GTSAC 1 cut(s) 995
NspI RCATGY 1 cut(s) 463
NspV TTCGAA 2 cut(s) 311, 851
PciI ACATGT 1 cut(s) 459
PcsI WCGNNNNNNNCGW 3 cut(s) 639, 735, 818
PfeI GAWTC 4 cut(s) 598, 653, 853, 1088
PflFI GACNNNGTC 1 cut(s) 799
PfoI TCCNGGA 1 cut(s) 1113
PinAI ACCGGT 1 cut(s) 1103
PleI GAGTC 2 cut(s) 61, 235
PluTI GGCGCC 1 cut(s) 369
PpsI GAGTC 2 cut(s) 61, 235
PscI ACATGT 1 cut(s) 459
Psp1406I AACGTT 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 1113
PspGI CCWGG 1 cut(s) 1113
PspN4I GGNNCC 3 cut(s) 367, 474, 536
PspOMI GGGCCC 1 cut(s) 472
PspPI GGNCC 4 cut(s) 467, 472, 473, 535
PsuI RGATCY 1 cut(s) 604
PsyI GACNNNGTC 1 cut(s) 799
RsaI GTAC 1 cut(s) 637
RsaNI GTAC 1 cut(s) 636
SaqAI TTAA 3 cut(s) 11, 378, 612
Sau3AI GATC 5 cut(s) 70, 94, 403, 604, 967
Sau96I GGNCC 4 cut(s) 467, 472, 473, 535
SchI GAGTC 2 cut(s) 62, 235
ScrFI CCNGG 3 cut(s) 471, 1064, 1115
SduI GDGCHC 2 cut(s) 476, 774
SfaNI GCATC 3 cut(s) 280, 870, 1005
SfoI GGCGCC 1 cut(s) 367
SfuI TTCGAA 2 cut(s) 311, 851
SinI GGWCC 2 cut(s) 467, 535
SmlI CTYRAG 1 cut(s) 895
SmoI CTYRAG 1 cut(s) 895
SpeI ACTAGT 1 cut(s) 1142
Sse9I AATT 1 cut(s) 313
SsiI CCGC 7 cut(s) 161, 285, 297, 374, 590, 780, 1079
SspDI GGCGCC 1 cut(s) 365
SspI AATATT 1 cut(s) 410
SspMI CTAG 4 cut(s) 507, 621, 1095, 1143
StyD4I CCNGG 3 cut(s) 469, 1062, 1113
StyI CCWWGG 1 cut(s) 575
TaaI ACNGT 3 cut(s) 137, 400, 930
TaiI ACGT 7 cut(s) 39, 83, 249, 521, 641, 732, 1028
TaqI TCGA 6 cut(s) 93, 311, 452, 601, 642, 851
TaqII GACCGA 2 cut(s) 808, 983
TasI AATT 1 cut(s) 313
TauI GCSGC 3 cut(s) 163, 593, 1081
TfiI GAWTC 4 cut(s) 598, 653, 853, 1088
Tru1I TTAA 3 cut(s) 11, 378, 612
Tru9I TTAA 3 cut(s) 11, 378, 612
TscAI CASTG 1 cut(s) 1006
TseFI GTSAC 1 cut(s) 995
Tsp45I GTSAC 1 cut(s) 995
TspDTI ATGAA 1 cut(s) 854
TspGWI ACGGA 1 cut(s) 972
TspRI CASTG 1 cut(s) 1006
Tth111I GACNNNGTC 1 cut(s) 799
VneI GTGCAC 1 cut(s) 770
VpaK11BI GGWCC 2 cut(s) 467, 535
XapI RAATTY 1 cut(s) 313
XceI RCATGY 1 cut(s) 463
XcmI CCANNNNNNNNNTGG 1 cut(s) 582
XmiI GTMKAC 1 cut(s) 488
XspI CTAG 4 cut(s) 507, 621, 1095, 1143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.