Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

26808876 .. 26810116

Gene Structure 1241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G67190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGAAGGCGGCGGAGTTGCTGACGTGGCTGTCCCCGGTACGAGGAAGAGAGACAGACCTTACAAAGGAATTAGGATGAGGAAGTGGGGAAAGTGGGTGGCGGAGATTCGTGAGCCTAACAAGCGCTCTAGGTTATGGCTTGGCTCTTACTCTACTCCCGAGGCGGCGGCGCGAGCTTACGACACGGCGGTTTTCTATCTTAGAGGACCTACGGCGAGGCTTAACTTCCCTGAGCTTCTTCCTGGGGAGAAATTCTCCGACGAGGATATGTCGGCTGCGACCATCAGGAAGAAAGCCACGGAGGTCGGTGCTCAGGTTGATGCTTTGGGCACGGCGGTGCAAAATAACCGCCACCGTGTTTTTGGTCAGAATCGAGATAGTGATGTGGATAATAAGAATTTTCATCGGAATTATCAAAACGGTGAACGAGAAGAAGAAGAAGAAGATGAGGATGACAAGAGATTGAGGAGTGGCGGCCGGTTATTGGATCGGGTTGACTTGAATAAATTACCCGACCCGGAAAGCTCCGATGAAGAATGGGAAAGCAAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010941 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

184

Amino Acids

21.05

Weight (kDa)

6.02

Isoelectric Point (pI)

50.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	21 - 69	7e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	29
AccII	CGCG	1 cut(s)	172
AciI	CCGC	9 cut(s)	9, 12, 101, 164, 167, 188, 335, 349, 474
AclWI	GGATC	1 cut(s)	495
AcoI	YGGCCR	1 cut(s)	475
AcsI	RAATTY	2 cut(s)	251, 397
AfaI	GTAC	1 cut(s)	40
AfeI	AGCGCT	1 cut(s)	125
AfiI	CCNNNNNNNGG	3 cut(s)	42, 65, 484
AgsI	TTSAA	1 cut(s)	502
AjiI	CACGTC	1 cut(s)	25
AjnI	CCWGG	1 cut(s)	241
AleI	CACNNNNGTG	1 cut(s)	335
AluBI	AGCT	3 cut(s)	176, 235, 525
AluI	AGCT	3 cut(s)	176, 235, 525
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	1 cut(s)	45
AlwI	GGATC	1 cut(s)	495
Ama87I	CYCGRG	1 cut(s)	158
Aor51HI	AGCGCT	1 cut(s)	125
AoxI	GGCC	1 cut(s)	475
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	2 cut(s)	251, 397
AspLEI	GCGC	2 cut(s)	126, 172
AspS9I	GGNCC	1 cut(s)	206
AsuC2I	CCSGG	2 cut(s)	36, 518
AsuHPI	GGTGA	1 cut(s)	434
AvaI	CYCGRG	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	206
BaeGI	GKGCMC	1 cut(s)	332
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	1 cut(s)	290
BceAI	ACGGC	3 cut(s)	201, 228, 348
BciT130I	CCWGG	1 cut(s)	243
BcnI	CCSGG	2 cut(s)	36, 518
BcoDI	GTCTC	1 cut(s)	45
BfaI	CTAG	1 cut(s)	129
BfoI	RGCGCY	1 cut(s)	127
BisI	GCNGC	5 cut(s)	10, 165, 168, 276, 475
BlsI	GCNGC	5 cut(s)	11, 166, 169, 277, 476
Bme1390I	CCNGG	3 cut(s)	36, 243, 518
Bme18I	GGWCC	1 cut(s)	206
BmeT110I	CYCGRG	1 cut(s)	158
BmgBI	CACGTC	1 cut(s)	25
BmgT120I	GGNCC	1 cut(s)	206
BmrFI	CCNGG	3 cut(s)	36, 243, 518
BmsI	GCATC	1 cut(s)	310
BplI	GAGNNNNNCTC	2 cut(s)	239, 271
Bpu10I	CCTNAGC	2 cut(s)	231, 312
BpuMI	CCSGG	2 cut(s)	36, 518
BsaJI	CCNNGG	4 cut(s)	34, 159, 242, 297
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 65, 484
Bse118I	RCCGGY	1 cut(s)	477
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	4 cut(s)	34, 159, 242, 297
BseGI	GGATG	2 cut(s)	81, 457
BseLI	CCNNNNNNNGG	3 cut(s)	42, 65, 484
BseMII	CTCAG	2 cut(s)	222, 326
BseRI	GAGGAG	1 cut(s)	481
BseSI	GKGCMC	1 cut(s)	332
BseX3I	CGGCCG	1 cut(s)	475
BseXI	GCAGC	1 cut(s)	262
Bsh1236I	CGCG	1 cut(s)	172
Bsh1285I	CGRYCG	1 cut(s)	478
BshFI	GGCC	1 cut(s)	477
BsiEI	CGRYCG	1 cut(s)	478
BsiHKAI	GWGCWC	1 cut(s)	313
BsiHKCI	CYCGRG	1 cut(s)	158
BsiSI	CCGG	3 cut(s)	36, 478, 518
BslFI	GGGAC	1 cut(s)	17
BslI	CCNNNNNNNGG	3 cut(s)	42, 65, 484
BsmAI	GTCTC	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	17
BsnI	GGCC	1 cut(s)	477
BsoBI	CYCGRG	1 cut(s)	158
Bsp1286I	GDGCHC	2 cut(s)	313, 332
Bsp143I	GATC	1 cut(s)	487
BspACI	CCGC	9 cut(s)	9, 12, 101, 164, 167, 188, 335, 349, 474
BspANI	GGCC	1 cut(s)	477
BspCNI	CTCAG	2 cut(s)	223, 325
BspFNI	CGCG	1 cut(s)	172
BspPI	GGATC	1 cut(s)	495
BsrFI	RCCGGY	1 cut(s)	477
BssAI	RCCGGY	1 cut(s)	477
BssECI	CCNNGG	4 cut(s)	34, 159, 242, 297
BssMI	GATC	1 cut(s)	487
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	2 cut(s)	356, 422
Bst6I	CTCTTC	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	3 cut(s)	200, 231, 312
BstDSI	CCRYGG	1 cut(s)	297
BstENI	CCTNNNNNAGG	1 cut(s)	63
BstF5I	GGATG	2 cut(s)	81, 457
BstFNI	CGCG	1 cut(s)	172
BstH2I	RGCGCY	1 cut(s)	127
BstHHI	GCGC	2 cut(s)	126, 172
BstKTI	GATC	1 cut(s)	490
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	1 cut(s)	487
BstMCI	CGRYCG	1 cut(s)	478
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 121, 173
BstNI	CCWGG	1 cut(s)	243
BstSCI	CCNGG	3 cut(s)	34, 241, 516
BstSLI	GKGCMC	1 cut(s)	332
BstUI	CGCG	1 cut(s)	172
BstV1I	GCAGC	1 cut(s)	262
BstZI	CGGCCG	1 cut(s)	475
BsuRI	GGCC	1 cut(s)	477
BtgI	CCRYGG	1 cut(s)	297
BtrI	CACGTC	1 cut(s)	25
BtsCI	GGATG	2 cut(s)	81, 457
Cac8I	GCNNGC	1 cut(s)	174
CfoI	GCGC	2 cut(s)	126, 172
Cfr10I	RCCGGY	1 cut(s)	477
Cfr13I	GGNCC	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	39
CviQI	GTAC	1 cut(s)	39
DdeI	CTNAG	3 cut(s)	200, 231, 312
DpnI	GATC	1 cut(s)	489
DpnII	GATC	1 cut(s)	487
DrdI	GACNNNNNNGTC	1 cut(s)	29
DseDI	GACNNNNNNGTC	1 cut(s)	29
EaeI	YGGCCR	1 cut(s)	475
EagI	CGGCCG	1 cut(s)	475
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
EciI	GGCGGA	2 cut(s)	27, 116
EclXI	CGGCCG	1 cut(s)	475
Eco47I	GGWCC	1 cut(s)	206
Eco47III	AGCGCT	1 cut(s)	125
Eco52I	CGGCCG	1 cut(s)	475
Eco88I	CYCGRG	1 cut(s)	158
EcoNI	CCTNNNNNAGG	1 cut(s)	63
EcoO109I	RGGNCCY	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	241
FaiI	YATR	2 cut(s)	136, 269
FaqI	GGGAC	1 cut(s)	17
Fnu4HI	GCNGC	5 cut(s)	10, 165, 168, 276, 475
FokI	GGATG	2 cut(s)	88, 464
Fsp4HI	GCNGC	5 cut(s)	10, 165, 168, 276, 475
FspBI	CTAG	1 cut(s)	129
GlaI	GCGC	2 cut(s)	125, 171
GluI	GCNGC	5 cut(s)	10, 165, 168, 276, 475
HaeII	RGCGCY	1 cut(s)	127
HaeIII	GGCC	1 cut(s)	477
HapII	CCGG	3 cut(s)	36, 478, 518
HhaI	GCGC	2 cut(s)	126, 172
Hin6I	GCGC	2 cut(s)	124, 170
HinP1I	GCGC	2 cut(s)	124, 170
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	2 cut(s)	106, 370
HpaII	CCGG	3 cut(s)	36, 478, 518
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	2 cut(s)	425, 496
Hpy188I	TCNGA	4 cut(s)	259, 369, 408, 529
Hpy188III	TCNNGA	4 cut(s)	110, 158, 286, 374
Hpy8I	GTNNAC	2 cut(s)	425, 496
Hpy99I	CGWCG	1 cut(s)	263
HpyCH4III	ACNGT	2 cut(s)	356, 422
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	1 cut(s)	340
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 121, 173
HpyF3I	CTNAG	3 cut(s)	200, 231, 312
HpySE526I	ACGT	1 cut(s)	24
HspAI	GCGC	2 cut(s)	124, 170
Kzo9I	GATC	1 cut(s)	487
LmnI	GCTCC	1 cut(s)	530
LpnPI	CCDG	8 cut(s)	49, 228, 243, 255, 271, 299, 491, 531
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	1 cut(s)	24
MalI	GATC	1 cut(s)	489
MboI	GATC	1 cut(s)	487
MboII	GAAGA	9 cut(s)	58, 230, 301, 443, 446, 449, 452, 455, 545
MhlI	GDGCHC	2 cut(s)	313, 332
MluCI	AATT	5 cut(s)	69, 251, 397, 409, 506
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	9 cut(s)	36, 72, 154, 197, 210, 256, 295, 442, 459
MseI	TTAA	2 cut(s)	222, 553
MslI	CAYNNNNRTG	1 cut(s)	335
MspI	CCGG	3 cut(s)	36, 478, 518
MspR9I	CCNGG	3 cut(s)	36, 243, 518
MvaI	CCWGG	1 cut(s)	243
MvnI	CGCG	1 cut(s)	172
MwoI	GCNNNNNNNGC	3 cut(s)	26, 121, 173
NciI	CCSGG	2 cut(s)	36, 518
NdeII	GATC	1 cut(s)	487
OliI	CACNNNNGTG	1 cut(s)	335
PfeI	GAWTC	2 cut(s)	106, 370
PkrI	GCNGC	5 cut(s)	11, 166, 169, 277, 476
PpuMI	RGGWCCY	1 cut(s)	206
Psp5II	RGGWCCY	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspPI	GGNCC	1 cut(s)	206
PspPPI	RGGWCCY	1 cut(s)	206
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
RseI	CAYNNNNRTG	1 cut(s)	335
SaqAI	TTAA	2 cut(s)	222, 553
SatI	GCNGC	5 cut(s)	10, 165, 168, 276, 475
Sau3AI	GATC	1 cut(s)	487
Sau96I	GGNCC	1 cut(s)	206
ScrFI	CCNGG	3 cut(s)	36, 243, 518
SduI	GDGCHC	2 cut(s)	313, 332
SetI	ASST	9 cut(s)	27, 61, 134, 178, 211, 237, 306, 318, 527
SfaNI	GCATC	1 cut(s)	310
SinI	GGWCC	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	335
Sse9I	AATT	5 cut(s)	69, 251, 397, 409, 506
SsiI	CCGC	9 cut(s)	9, 12, 101, 164, 167, 188, 335, 349, 474
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	3 cut(s)	34, 241, 516
TaaI	ACNGT	2 cut(s)	356, 422
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	1 cut(s)	373
TasI	AATT	5 cut(s)	69, 251, 397, 409, 506
TauI	GCSGC	4 cut(s)	12, 167, 170, 477
TfiI	GAWTC	2 cut(s)	106, 370
Tru1I	TTAA	2 cut(s)	222, 553
Tru9I	TTAA	2 cut(s)	222, 553
TseI	GCWGC	1 cut(s)	275
TspDTI	ATGAA	2 cut(s)	392, 546
TspGWI	ACGGA	1 cut(s)	314
VpaK11BI	GGWCC	1 cut(s)	206
XagI	CCTNNNNNAGG	1 cut(s)	63
XapI	RAATTY	2 cut(s)	251, 397
XcmI	CCANNNNNNNNNTGG	1 cut(s)	359
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.