Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

3289235 .. 3293863

Gene Structure 4629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g06230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGATGAATGACCAGTCGAGAGGTGTGTTGAATGGGGTAAGACCCGAAATCAAATCTACGATTTCTCATGAGGGGTCATCTGGGTCTGAGAGTGATTGCCGGAACGGCTGGGGTACGCCTTTCTCATACCATCGAATCTGTTCCCGAACCGCGTATCCGATCGATCTGTCCCCATTCTTTCCTTTGTTTAAGGCACCCAAACATTCTGCGGAGCGCATTTTATGCGACCTTTATGGGCTTTTGCGGGAGAGTACTTGTCTTACTGAGAAACGAGTTGCCACTGTAACTTACATATTGAGCTTGGCGAAAGGTCATGAGAAACATGTGATTCATAGGGACATTAAGCCAGAAAACTTGTTGCTTCATCATGAGTGGTACCTTATTATTGCATCAGAGGATTTATTTTGTGGGTACGGAATCAACGTAGAGACAGAGGCTATCCAAGTCAGCCGGAGATTCGCCGCCGTCCTCTTGCACCGACGAGCTAGTCCGGTTCTCGTCGTTTGCCTCTGCATGCCACCTAGCTCCTCTTCCGTCTTCGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000228 GO:0000278 GO:0000775 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005875 GO:0005876 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0008152 GO:0009987 GO:0010564 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022402 GO:0031974 GO:0031981 GO:0032133 GO:0032465 GO:0032991 GO:0035173 GO:0035174 GO:0035175 GO:0035404 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043987 GO:0043988 GO:0044022 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0048471 GO:0050789 GO:0050794 GO:0051233 GO:0051276 GO:0051302 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140096 GO:1901564 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

182

Amino Acids

20.34

Weight (kDa)

8.18

Isoelectric Point (pI)

56.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	77 - 124	4.2e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	486
Acc65I	GGTACC	1 cut(s)	375
AccB1I	GGYRCC	2 cut(s)	193, 375
AccII	CGCG	1 cut(s)	152
AciI	CCGC	4 cut(s)	150, 209, 244, 462
AfaI	GTAC	4 cut(s)	115, 253, 377, 413
AflIII	ACRYGT	1 cut(s)	322
AgsI	TTSAA	1 cut(s)	31
AloI	GAACNNNNNNTCC	2 cut(s)	139, 171
AluBI	AGCT	3 cut(s)	300, 485, 525
AluI	AGCT	3 cut(s)	300, 485, 525
Alw26I	GTCTC	1 cut(s)	422
Asp700I	GAANNNNTTC	1 cut(s)	139
Asp718I	GGTACC	1 cut(s)	375
AspLEI	GCGC	1 cut(s)	216
BanI	GGYRCC	2 cut(s)	193, 375
BbsI	GAAGAC	1 cut(s)	529
BccI	CCATC	1 cut(s)	138
BceAI	ACGGC	2 cut(s)	121, 449
BciVI	GTATCC	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	2 cut(s)	486, 522
BfuI	GTATCC	1 cut(s)	165
BglI	GCCNNNNNGGC	1 cut(s)	105
BisI	GCNGC	1 cut(s)	462
BlsI	GCNGC	1 cut(s)	463
BmcAI	AGTACT	1 cut(s)	253
BmiI	GGNNCC	2 cut(s)	195, 377
BmsI	GCATC	1 cut(s)	398
BpiI	GAAGAC	1 cut(s)	529
Bsa29I	ATCGAT	1 cut(s)	162
BsaWI	WCCGGW	1 cut(s)	490
Bse1I	ACTGG	1 cut(s)	13
BseCI	ATCGAT	1 cut(s)	162
BseMII	CTCAG	2 cut(s)	78, 255
BseNI	ACTGG	1 cut(s)	13
BseRI	GAGGAG	1 cut(s)	517
BseYI	CCCAGC	1 cut(s)	108
Bsh1236I	CGCG	1 cut(s)	152
Bsh1285I	CGRYCG	1 cut(s)	162
BshNI	GGYRCC	2 cut(s)	193, 375
BshVI	ATCGAT	1 cut(s)	162
BsiEI	CGRYCG	1 cut(s)	162
BsiSI	CCGG	3 cut(s)	100, 451, 491
BslFI	GGGAC	2 cut(s)	154, 350
BsmAI	GTCTC	1 cut(s)	422
BsmFI	GGGAC	2 cut(s)	154, 350
Bsp143I	GATC	2 cut(s)	159, 163
BspACI	CCGC	4 cut(s)	150, 209, 244, 462
BspCNI	CTCAG	2 cut(s)	79, 256
BspDI	ATCGAT	1 cut(s)	162
BspFNI	CGCG	1 cut(s)	152
BspHI	TCATGA	3 cut(s)	67, 313, 367
BspLI	GGNNCC	2 cut(s)	195, 377
BspT107I	GGYRCC	2 cut(s)	193, 375
BsrI	ACTGG	1 cut(s)	13
BssMI	GATC	2 cut(s)	159, 163
Bst4CI	ACNGT	1 cut(s)	283
Bst6I	CTCTTC	1 cut(s)	535
BstAPI	GCANNNNNTGC	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	515
BstDEI	CTNAG	2 cut(s)	87, 264
BstFNI	CGCG	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	2 cut(s)	162, 166
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	2 cut(s)	159, 163
BstMCI	CGRYCG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 222
BstNSI	RCATGY	2 cut(s)	326, 517
BstUI	CGCG	1 cut(s)	152
BstV2I	GAAGAC	1 cut(s)	529
Bsu15I	ATCGAT	1 cut(s)	162
BsuI	GTATCC	1 cut(s)	165
BsuTUI	ATCGAT	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	515
CciI	TCATGA	3 cut(s)	67, 313, 367
CfoI	GCGC	1 cut(s)	216
ClaI	ATCGAT	1 cut(s)	162
Csp6I	GTAC	4 cut(s)	114, 252, 376, 412
CviAII	CATG	5 cut(s)	68, 314, 323, 368, 514
CviJI	RGCY	8 cut(s)	108, 238, 300, 346, 437, 450, 485, 525
CviKI_1	RGCY	8 cut(s)	108, 238, 300, 346, 437, 450, 485, 525
CviQI	GTAC	4 cut(s)	114, 252, 376, 412
DdeI	CTNAG	2 cut(s)	87, 264
DpnI	GATC	2 cut(s)	161, 165
DpnII	GATC	2 cut(s)	159, 163
DrdI	GACNNNNNNGTC	1 cut(s)	486
DseDI	GACNNNNNNGTC	1 cut(s)	486
Eam1104I	CTCTTC	1 cut(s)	535
EarI	CTCTTC	1 cut(s)	535
FaeI	CATG	5 cut(s)	71, 317, 326, 371, 517
FaqI	GGGAC	2 cut(s)	154, 350
FatI	CATG	5 cut(s)	67, 313, 322, 367, 513
FauI	CCCGC	1 cut(s)	237
Fnu4HI	GCNGC	1 cut(s)	462
Fsp4HI	GCNGC	1 cut(s)	462
FspBI	CTAG	2 cut(s)	486, 522
GlaI	GCGC	1 cut(s)	215
GluI	GCNGC	1 cut(s)	462
GsaI	CCCAGC	1 cut(s)	112
HapII	CCGG	3 cut(s)	100, 451, 491
HhaI	GCGC	1 cut(s)	216
Hin1II	CATG	5 cut(s)	71, 317, 326, 371, 517
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HinfI	GANTC	4 cut(s)	135, 328, 417, 456
HpaII	CCGG	3 cut(s)	100, 451, 491
Hpy188I	TCNGA	3 cut(s)	88, 159, 394
Hpy188III	TCNNGA	5 cut(s)	18, 68, 144, 314, 368
Hpy99I	CGWCG	2 cut(s)	483, 503
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	3 cut(s)	389, 475, 513
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 222
HpyF3I	CTNAG	2 cut(s)	87, 264
HpySE526I	ACGT	1 cut(s)	423
Hsp92II	CATG	5 cut(s)	71, 317, 326, 371, 517
HspAI	GCGC	1 cut(s)	214
KpnI	GGTACC	1 cut(s)	379
Kzo9I	GATC	2 cut(s)	159, 163
LmnI	GCTCC	2 cut(s)	211, 530
LpnPI	CCDG	7 cut(s)	26, 66, 94, 113, 360, 464, 504
LweI	GCATC	1 cut(s)	398
MaeI	CTAG	2 cut(s)	486, 522
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	2 cut(s)	161, 165
MboI	GATC	2 cut(s)	159, 163
MboII	GAAGA	2 cut(s)	522, 529
MnlI	CCTC	7 cut(s)	14, 64, 388, 427, 479, 518, 538
MroXI	GAANNNNTTC	1 cut(s)	139
MseI	TTAA	2 cut(s)	189, 342
MspI	CCGG	3 cut(s)	100, 451, 491
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	2 cut(s)	105, 222
NdeII	GATC	2 cut(s)	159, 163
NlaIII	CATG	5 cut(s)	71, 317, 326, 371, 517
NlaIV	GGNNCC	2 cut(s)	195, 377
NspI	RCATGY	2 cut(s)	326, 517
PaeI	GCATGC	1 cut(s)	517
PagI	TCATGA	3 cut(s)	67, 313, 367
PciI	ACATGT	1 cut(s)	322
PcsI	WCGNNNNNNNCGW	1 cut(s)	420
PdmI	GAANNNNTTC	1 cut(s)	139
PfeI	GAWTC	4 cut(s)	135, 328, 417, 456
PkrI	GCNGC	1 cut(s)	463
Ple19I	CGATCG	1 cut(s)	162
PscI	ACATGT	1 cut(s)	322
PspFI	CCCAGC	1 cut(s)	108
PspN4I	GGNNCC	2 cut(s)	195, 377
PvuI	CGATCG	1 cut(s)	162
RsaI	GTAC	4 cut(s)	115, 253, 377, 413
RsaNI	GTAC	4 cut(s)	114, 252, 376, 412
SaqAI	TTAA	2 cut(s)	189, 342
SatI	GCNGC	1 cut(s)	462
Sau3AI	GATC	2 cut(s)	159, 163
ScaI	AGTACT	1 cut(s)	253
SetI	ASST	9 cut(s)	25, 231, 302, 313, 381, 426, 487, 523, 527
SfaNI	GCATC	1 cut(s)	398
SphI	GCATGC	1 cut(s)	517
SsiI	CCGC	4 cut(s)	150, 209, 244, 462
SspMI	CTAG	2 cut(s)	486, 522
TaaI	ACNGT	1 cut(s)	283
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	3 cut(s)	17, 133, 162
TatI	WGTACW	1 cut(s)	251
TauI	GCSGC	1 cut(s)	464
TfiI	GAWTC	4 cut(s)	135, 328, 417, 456
Tru1I	TTAA	2 cut(s)	189, 342
Tru9I	TTAA	2 cut(s)	189, 342
TscAI	CASTG	1 cut(s)	286
TspDTI	ATGAA	3 cut(s)	20, 320, 353
TspGWI	ACGGA	2 cut(s)	429, 523
TspRI	CASTG	1 cut(s)	286
XceI	RCATGY	2 cut(s)	326, 517
XmnI	GAANNNNTTC	1 cut(s)	139
XspI	CTAG	2 cut(s)	486, 522
ZrmI	AGTACT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.