Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

3958395 .. 3960388

Gene Structure 1994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g07433.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGTCTGCGGAGACGGATCAAAGAAGAGTGGGGAACCTCTCACTGCCGTTTGGCCCTTTGATGTGCACACTTCTCTTGCCGAAGGGGCGTGGCGACATGCTCAAGAAGGCAAACCTATCGCCGATGCTCTGGACCAGGACGTCAAAGAACCTTGTTACATGGATGAAATGAATGCTGTCTTCAAACTCGGCATAATGTGCACTGAGAAAAATCCTTCTAACAGGCCTTCTATGAGGGAGGTTCTGCATATCTTGGTTAAAACCTGTCCTGCACCAGTTCGAAGGGAAAAGACCGAGTATGCCGCTGCTCCTCTCCTCAAGAATTCAAGGCGAGAGAGGGTTTTGGAAGATCAAGATGGTTTGGCAACGAATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010468 GO:0019222 GO:0022622 GO:0032501 GO:0032502 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

126

Amino Acids

13.91

Weight (kDa)

5.92

Isoelectric Point (pI)

52.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	140
AatII	GACGTC	1 cut(s)	144
AciI	CCGC	2 cut(s)	9, 303
AclWI	GGATC	1 cut(s)	25
AcsI	RAATTY	1 cut(s)	322
AcyI	GRCGYC	1 cut(s)	141
AgsI	TTSAA	2 cut(s)	184, 327
AjnI	CCWGG	1 cut(s)	135
Alw21I	GWGCWC	2 cut(s)	69, 203
Alw26I	GTCTC	1 cut(s)	6
Alw44I	GTGCAC	2 cut(s)	65, 199
AlwI	GGATC	1 cut(s)	25
AoxI	GGCC	2 cut(s)	53, 224
ApaLI	GTGCAC	2 cut(s)	65, 199
ApeKI	GCWGC	1 cut(s)	305
ApoI	RAATTY	1 cut(s)	322
AspS9I	GGNCC	2 cut(s)	54, 133
AsuII	TTCGAA	1 cut(s)	280
AvaII	GGWCC	1 cut(s)	133
BaeGI	GKGCMC	2 cut(s)	69, 203
BbsI	GAAGAC	1 cut(s)	172
Bbv12I	GWGCWC	2 cut(s)	69, 203
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	1 cut(s)	350
BceAI	ACGGC	1 cut(s)	32
BcgI	CGANNNNNNTGC	2 cut(s)	100, 134
BciT130I	CCWGG	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	6
BglI	GCCNNNNNGGC	1 cut(s)	86
BisI	GCNGC	2 cut(s)	303, 306
BlsI	GCNGC	2 cut(s)	304, 307
Bme1390I	CCNGG	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	133
BmgT120I	GGNCC	2 cut(s)	54, 133
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	137
BmsI	GCATC	1 cut(s)	115
BpiI	GAAGAC	1 cut(s)	172
Bpu14I	TTCGAA	1 cut(s)	280
BpuEI	CTTGAG	2 cut(s)	87, 302
BsaHI	GRCGYC	1 cut(s)	141
Bse1I	ACTGG	1 cut(s)	275
BseBI	CCWGG	1 cut(s)	137
BseGI	GGATG	1 cut(s)	169
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	275
BseRI	GAGGAG	2 cut(s)	300, 305
BseSI	GKGCMC	2 cut(s)	69, 203
BseXI	GCAGC	1 cut(s)	292
BsgI	GTGCAG	1 cut(s)	255
BshFI	GGCC	2 cut(s)	55, 226
BsiHKAI	GWGCWC	2 cut(s)	69, 203
BsmAI	GTCTC	1 cut(s)	6
BsmBI	CGTCTC	1 cut(s)	6
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	2 cut(s)	55, 226
Bsp119I	TTCGAA	1 cut(s)	280
Bsp1286I	GDGCHC	2 cut(s)	69, 203
Bsp143I	GATC	2 cut(s)	17, 349
BspACI	CCGC	2 cut(s)	9, 303
BspANI	GGCC	2 cut(s)	55, 226
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	36
BspPI	GGATC	1 cut(s)	25
BspT104I	TTCGAA	1 cut(s)	280
BsrI	ACTGG	1 cut(s)	275
BssMI	GATC	2 cut(s)	17, 349
BssNI	GRCGYC	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	137
Bst6I	CTCTTC	1 cut(s)	20
BstACI	GRCGYC	1 cut(s)	141
BstAPI	GCANNNNNTGC	1 cut(s)	198
BstBI	TTCGAA	1 cut(s)	280
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	169
BstKTI	GATC	2 cut(s)	20, 352
BstMAI	GTCTC	1 cut(s)	6
BstMBI	GATC	2 cut(s)	17, 349
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 198
BstNI	CCWGG	1 cut(s)	137
BstNSI	RCATGY	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	135
BstSLI	GKGCMC	2 cut(s)	69, 203
BstV1I	GCAGC	1 cut(s)	292
BstV2I	GAAGAC	1 cut(s)	172
BsuRI	GGCC	2 cut(s)	55, 226
BtsCI	GGATG	1 cut(s)	169
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	2 cut(s)	42, 201
Cfr13I	GGNCC	2 cut(s)	54, 133
CviAII	CATG	2 cut(s)	98, 160
CviJI	RGCY	2 cut(s)	55, 226
CviKI_1	RGCY	2 cut(s)	55, 226
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	2 cut(s)	19, 351
DpnII	GATC	2 cut(s)	17, 349
DrdI	GACNNNNNNGTC	1 cut(s)	140
DseDI	GACNNNNNNGTC	1 cut(s)	140
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco147I	AGGCCT	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	133
EcoRI	GAATTC	1 cut(s)	322
EcoRII	CCWGG	1 cut(s)	135
Esp3I	CGTCTC	1 cut(s)	6
FaeI	CATG	2 cut(s)	101, 163
FaiI	YATR	6 cut(s)	99, 161, 194, 233, 249, 300
FatI	CATG	2 cut(s)	97, 159
Fnu4HI	GCNGC	2 cut(s)	303, 306
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	2 cut(s)	303, 306
GluI	GCNGC	2 cut(s)	303, 306
HaeIII	GGCC	2 cut(s)	55, 226
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	2 cut(s)	101, 163
Hpy166II	GTNNAC	2 cut(s)	67, 201
Hpy188III	TCNNGA	4 cut(s)	104, 131, 319, 353
Hpy8I	GTNNAC	2 cut(s)	67, 201
HpyAV	CCTTC	5 cut(s)	77, 101, 225, 237, 276
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	4 cut(s)	67, 201, 247, 272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 198
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	1 cut(s)	141
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	2 cut(s)	101, 163
Kzo9I	GATC	2 cut(s)	17, 349
LmnI	GCTCC	1 cut(s)	313
LpnPI	CCDG	7 cut(s)	116, 122, 149, 208, 277, 282, 288
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	1 cut(s)	115
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	2 cut(s)	19, 351
MboI	GATC	2 cut(s)	17, 349
MboII	GAAGA	3 cut(s)	37, 172, 359
MhlI	GDGCHC	2 cut(s)	69, 203
MluCI	AATT	1 cut(s)	322
MnlI	CCTC	6 cut(s)	48, 228, 232, 321, 326, 330
MseI	TTAA	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	305
MspR9I	CCNGG	1 cut(s)	137
Mva1269I	GAATGC	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	2 cut(s)	86, 198
NdeII	GATC	2 cut(s)	17, 349
NlaIII	CATG	2 cut(s)	101, 163
NlaIV	GGNNCC	1 cut(s)	36
NmeAIII	GCCGAG	1 cut(s)	168
NspI	RCATGY	1 cut(s)	101
NspV	TTCGAA	1 cut(s)	280
PceI	AGGCCT	1 cut(s)	226
PctI	GAATGC	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	304, 307
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	2 cut(s)	54, 133
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	2 cut(s)	303, 306
Sau3AI	GATC	2 cut(s)	17, 349
Sau96I	GGNCC	2 cut(s)	54, 133
ScrFI	CCNGG	1 cut(s)	137
SduI	GDGCHC	2 cut(s)	69, 203
SetI	ASST	6 cut(s)	40, 118, 144, 154, 243, 266
SfaNI	GCATC	1 cut(s)	115
SfuI	TTCGAA	1 cut(s)	280
SinI	GGWCC	1 cut(s)	133
SmlI	CTYRAG	2 cut(s)	102, 317
SmoI	CTYRAG	2 cut(s)	102, 317
Sse9I	AATT	1 cut(s)	322
SseBI	AGGCCT	1 cut(s)	226
SsiI	CCGC	2 cut(s)	9, 303
StuI	AGGCCT	1 cut(s)	226
StyD4I	CCNGG	1 cut(s)	135
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	1 cut(s)	280
TaqII	GACCGA	1 cut(s)	308
TasI	AATT	1 cut(s)	322
TauI	GCSGC	1 cut(s)	305
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	2 cut(s)	49, 208
TseI	GCWGC	1 cut(s)	305
TspDTI	ATGAA	2 cut(s)	180, 185
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	2 cut(s)	49, 208
VneI	GTGCAC	2 cut(s)	65, 199
VpaK11BI	GGWCC	1 cut(s)	133
XapI	RAATTY	1 cut(s)	322
XceI	RCATGY	1 cut(s)	101
ZraI	GACGTC	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.